Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06050 and HMPREF1058_RS06045 are separated by 151 nucleotides HMPREF1058_RS06045 and HMPREF1058_RS06040 are separated by 237 nucleotides HMPREF1058_RS06040 and HMPREF1058_RS06035 are separated by 38 nucleotides
HMPREF1058_RS06050: HMPREF1058_RS06050 - type I glyceraldehyde-3-phosphate dehydrogenase, at 15,811 to 16,821
_RS06050
HMPREF1058_RS06045: HMPREF1058_RS06045 - large-conductance mechanosensitive channel protein MscL, at 16,973 to 17,413
_RS06045
HMPREF1058_RS06040: HMPREF1058_RS06040 - glutamine-hydrolyzing GMP synthase, at 17,651 to 19,204
_RS06040
HMPREF1058_RS06035: HMPREF1058_RS06035 - glutamine-hydrolyzing GMP synthase, at 19,243 to 20,550
_RS06035
Position (kb) 17
18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 16.852 kb on - strand at 16.899 kb on - strand at 16.899 kb on - strand at 17.128 kb on - strand, within HMPREF1058_RS06045 at 17.158 kb on - strand, within HMPREF1058_RS06045 at 17.158 kb on - strand, within HMPREF1058_RS06045 at 17.163 kb on + strand, within HMPREF1058_RS06045 at 17.164 kb on - strand, within HMPREF1058_RS06045 at 17.217 kb on - strand, within HMPREF1058_RS06045 at 17.268 kb on + strand, within HMPREF1058_RS06045 at 17.275 kb on - strand, within HMPREF1058_RS06045 at 17.364 kb on + strand, within HMPREF1058_RS06045 at 17.364 kb on + strand, within HMPREF1058_RS06045 at 17.365 kb on - strand, within HMPREF1058_RS06045 at 17.368 kb on + strand, within HMPREF1058_RS06045 at 17.472 kb on + strand at 17.473 kb on - strand at 17.473 kb on - strand at 17.474 kb on + strand at 17.475 kb on - strand at 17.567 kb on + strand at 17.568 kb on - strand at 17.609 kb on + strand at 17.636 kb on + strand at 17.636 kb on + strand at 17.819 kb on + strand, within HMPREF1058_RS06040 at 18.096 kb on + strand, within HMPREF1058_RS06040 at 18.132 kb on + strand, within HMPREF1058_RS06040 at 18.132 kb on + strand, within HMPREF1058_RS06040 at 18.141 kb on + strand, within HMPREF1058_RS06040 at 18.297 kb on + strand, within HMPREF1058_RS06040 at 18.426 kb on + strand, within HMPREF1058_RS06040 at 18.459 kb on + strand, within HMPREF1058_RS06040 at 18.639 kb on + strand, within HMPREF1058_RS06040 at 18.711 kb on + strand, within HMPREF1058_RS06040 at 18.756 kb on + strand, within HMPREF1058_RS06040 at 18.756 kb on + strand, within HMPREF1058_RS06040 at 18.772 kb on + strand, within HMPREF1058_RS06040 at 18.829 kb on + strand, within HMPREF1058_RS06040 at 18.887 kb on + strand, within HMPREF1058_RS06040 at 18.887 kb on + strand, within HMPREF1058_RS06040 at 18.887 kb on + strand, within HMPREF1058_RS06040 at 18.887 kb on + strand, within HMPREF1058_RS06040 at 18.887 kb on + strand, within HMPREF1058_RS06040 at 18.957 kb on + strand, within HMPREF1058_RS06040 at 18.957 kb on + strand, within HMPREF1058_RS06040 at 18.957 kb on + strand, within HMPREF1058_RS06040 at 19.002 kb on + strand, within HMPREF1058_RS06040 at 19.002 kb on + strand at 19.018 kb on + strand, within HMPREF1058_RS06040 at 19.137 kb on + strand at 19.137 kb on + strand at 19.155 kb on + strand at 19.217 kb on + strand at 19.225 kb on + strand at 19.225 kb on + strand at 19.254 kb on + strand at 19.263 kb on + strand at 19.325 kb on + strand at 19.326 kb on - strand at 19.460 kb on - strand, within HMPREF1058_RS06035 at 19.670 kb on + strand, within HMPREF1058_RS06035 at 19.694 kb on + strand, within HMPREF1058_RS06035 at 19.754 kb on + strand, within HMPREF1058_RS06035 at 19.755 kb on - strand, within HMPREF1058_RS06035 at 19.755 kb on - strand, within HMPREF1058_RS06035 at 19.986 kb on + strand, within HMPREF1058_RS06035 at 20.020 kb on - strand, within HMPREF1058_RS06035 at 20.054 kb on + strand, within HMPREF1058_RS06035 at 20.055 kb on - strand, within HMPREF1058_RS06035 at 20.055 kb on - strand, within HMPREF1058_RS06035 at 20.150 kb on + strand, within HMPREF1058_RS06035
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 16,852 - -0.9 16,899 - +2.8 16,899 - +2.8 17,128 - HMPREF1058_RS06045 0.35 -0.5 17,158 - HMPREF1058_RS06045 0.42 +0.2 17,158 - HMPREF1058_RS06045 0.42 +0.8 17,163 + HMPREF1058_RS06045 0.43 +0.6 17,164 - HMPREF1058_RS06045 0.43 +1.2 17,217 - HMPREF1058_RS06045 0.55 +0.1 17,268 + HMPREF1058_RS06045 0.67 +0.9 17,275 - HMPREF1058_RS06045 0.68 +1.8 17,364 + HMPREF1058_RS06045 0.89 +1.3 17,364 + HMPREF1058_RS06045 0.89 +0.7 17,365 - HMPREF1058_RS06045 0.89 +1.3 17,368 + HMPREF1058_RS06045 0.90 +1.3 17,472 + +0.4 17,473 - +0.5 17,473 - -0.4 17,474 + +1.1 17,475 - +0.7 17,567 + +0.1 17,568 - -0.7 17,609 + -0.3 17,636 + +1.3 17,636 + -0.6 17,819 + HMPREF1058_RS06040 0.11 -0.2 18,096 + HMPREF1058_RS06040 0.29 +0.5 18,132 + HMPREF1058_RS06040 0.31 +0.5 18,132 + HMPREF1058_RS06040 0.31 +0.1 18,141 + HMPREF1058_RS06040 0.32 -0.9 18,297 + HMPREF1058_RS06040 0.42 -0.2 18,426 + HMPREF1058_RS06040 0.50 +0.3 18,459 + HMPREF1058_RS06040 0.52 +2.3 18,639 + HMPREF1058_RS06040 0.64 +0.3 18,711 + HMPREF1058_RS06040 0.68 +1.6 18,756 + HMPREF1058_RS06040 0.71 +0.6 18,756 + HMPREF1058_RS06040 0.71 +0.1 18,772 + HMPREF1058_RS06040 0.72 -0.5 18,829 + HMPREF1058_RS06040 0.76 +0.1 18,887 + HMPREF1058_RS06040 0.80 +2.9 18,887 + HMPREF1058_RS06040 0.80 +1.2 18,887 + HMPREF1058_RS06040 0.80 +1.1 18,887 + HMPREF1058_RS06040 0.80 +2.8 18,887 + HMPREF1058_RS06040 0.80 -2.2 18,957 + HMPREF1058_RS06040 0.84 +1.1 18,957 + HMPREF1058_RS06040 0.84 -1.3 18,957 + HMPREF1058_RS06040 0.84 -0.8 19,002 + HMPREF1058_RS06040 0.87 +1.0 19,002 + -0.3 19,018 + HMPREF1058_RS06040 0.88 +1.0 19,137 + +1.5 19,137 + +0.3 19,155 + +1.6 19,217 + +0.5 19,225 + +1.5 19,225 + -1.5 19,254 + +1.8 19,263 + +0.4 19,325 + +2.2 19,326 - +1.7 19,460 - HMPREF1058_RS06035 0.17 +2.6 19,670 + HMPREF1058_RS06035 0.33 +1.6 19,694 + HMPREF1058_RS06035 0.34 +0.2 19,754 + HMPREF1058_RS06035 0.39 +2.7 19,755 - HMPREF1058_RS06035 0.39 +0.8 19,755 - HMPREF1058_RS06035 0.39 -0.3 19,986 + HMPREF1058_RS06035 0.57 +2.8 20,020 - HMPREF1058_RS06035 0.59 -1.0 20,054 + HMPREF1058_RS06035 0.62 +1.4 20,055 - HMPREF1058_RS06035 0.62 -0.5 20,055 - HMPREF1058_RS06035 0.62 +3.4 20,150 + HMPREF1058_RS06035 0.69 +2.1
Or see this region's nucleotide sequence