Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06040 and HMPREF1058_RS06035 are separated by 38 nucleotides HMPREF1058_RS06035 and HMPREF1058_RS06030 are separated by 156 nucleotides
HMPREF1058_RS06040: HMPREF1058_RS06040 - glutamine-hydrolyzing GMP synthase, at 17,651 to 19,204
_RS06040
HMPREF1058_RS06035: HMPREF1058_RS06035 - glutamine-hydrolyzing GMP synthase, at 19,243 to 20,550
_RS06035
HMPREF1058_RS06030: HMPREF1058_RS06030 - aminopeptidase P family protein, at 20,707 to 21,867
_RS06030
Position (kb) 19
20
21 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 18.297 kb on + strand, within HMPREF1058_RS06040 at 18.426 kb on + strand, within HMPREF1058_RS06040 at 18.459 kb on + strand, within HMPREF1058_RS06040 at 18.639 kb on + strand, within HMPREF1058_RS06040 at 18.711 kb on + strand, within HMPREF1058_RS06040 at 18.756 kb on + strand, within HMPREF1058_RS06040 at 18.756 kb on + strand, within HMPREF1058_RS06040 at 18.772 kb on + strand, within HMPREF1058_RS06040 at 18.829 kb on + strand, within HMPREF1058_RS06040 at 18.887 kb on + strand, within HMPREF1058_RS06040 at 18.887 kb on + strand, within HMPREF1058_RS06040 at 18.887 kb on + strand, within HMPREF1058_RS06040 at 18.887 kb on + strand, within HMPREF1058_RS06040 at 18.887 kb on + strand, within HMPREF1058_RS06040 at 18.957 kb on + strand, within HMPREF1058_RS06040 at 18.957 kb on + strand, within HMPREF1058_RS06040 at 18.957 kb on + strand, within HMPREF1058_RS06040 at 19.002 kb on + strand, within HMPREF1058_RS06040 at 19.002 kb on + strand at 19.018 kb on + strand, within HMPREF1058_RS06040 at 19.137 kb on + strand at 19.137 kb on + strand at 19.155 kb on + strand at 19.217 kb on + strand at 19.225 kb on + strand at 19.225 kb on + strand at 19.254 kb on + strand at 19.263 kb on + strand at 19.325 kb on + strand at 19.326 kb on - strand at 19.460 kb on - strand, within HMPREF1058_RS06035 at 19.670 kb on + strand, within HMPREF1058_RS06035 at 19.694 kb on + strand, within HMPREF1058_RS06035 at 19.754 kb on + strand, within HMPREF1058_RS06035 at 19.755 kb on - strand, within HMPREF1058_RS06035 at 19.755 kb on - strand, within HMPREF1058_RS06035 at 19.986 kb on + strand, within HMPREF1058_RS06035 at 20.020 kb on - strand, within HMPREF1058_RS06035 at 20.054 kb on + strand, within HMPREF1058_RS06035 at 20.055 kb on - strand, within HMPREF1058_RS06035 at 20.055 kb on - strand, within HMPREF1058_RS06035 at 20.150 kb on + strand, within HMPREF1058_RS06035 at 20.412 kb on + strand, within HMPREF1058_RS06035 at 20.413 kb on - strand, within HMPREF1058_RS06035 at 20.413 kb on - strand, within HMPREF1058_RS06035 at 20.421 kb on + strand at 20.422 kb on - strand at 20.422 kb on - strand at 20.422 kb on - strand at 20.470 kb on - strand at 20.555 kb on + strand at 20.556 kb on - strand at 20.558 kb on - strand at 20.642 kb on - strand at 20.695 kb on - strand at 20.716 kb on + strand at 20.797 kb on + strand at 21.027 kb on + strand, within HMPREF1058_RS06030 at 21.074 kb on + strand, within HMPREF1058_RS06030 at 21.074 kb on + strand, within HMPREF1058_RS06030 at 21.126 kb on + strand, within HMPREF1058_RS06030 at 21.126 kb on + strand, within HMPREF1058_RS06030 at 21.126 kb on + strand, within HMPREF1058_RS06030 at 21.126 kb on + strand, within HMPREF1058_RS06030 at 21.127 kb on - strand, within HMPREF1058_RS06030 at 21.127 kb on - strand, within HMPREF1058_RS06030 at 21.127 kb on - strand, within HMPREF1058_RS06030 at 21.128 kb on + strand, within HMPREF1058_RS06030 at 21.148 kb on + strand, within HMPREF1058_RS06030 at 21.160 kb on + strand, within HMPREF1058_RS06030 at 21.267 kb on + strand, within HMPREF1058_RS06030 at 21.292 kb on - strand, within HMPREF1058_RS06030 at 21.296 kb on - strand, within HMPREF1058_RS06030 at 21.403 kb on + strand, within HMPREF1058_RS06030 at 21.404 kb on - strand, within HMPREF1058_RS06030 at 21.404 kb on - strand, within HMPREF1058_RS06030 at 21.404 kb on - strand, within HMPREF1058_RS06030 at 21.417 kb on + strand, within HMPREF1058_RS06030 at 21.418 kb on - strand, within HMPREF1058_RS06030 at 21.420 kb on + strand, within HMPREF1058_RS06030 at 21.421 kb on - strand, within HMPREF1058_RS06030 at 21.422 kb on + strand, within HMPREF1058_RS06030 at 21.423 kb on - strand, within HMPREF1058_RS06030 at 21.505 kb on - strand, within HMPREF1058_RS06030
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 18,297 + HMPREF1058_RS06040 0.42 -0.2 18,426 + HMPREF1058_RS06040 0.50 +0.3 18,459 + HMPREF1058_RS06040 0.52 +2.3 18,639 + HMPREF1058_RS06040 0.64 +0.3 18,711 + HMPREF1058_RS06040 0.68 +1.6 18,756 + HMPREF1058_RS06040 0.71 +0.6 18,756 + HMPREF1058_RS06040 0.71 +0.1 18,772 + HMPREF1058_RS06040 0.72 -0.5 18,829 + HMPREF1058_RS06040 0.76 +0.1 18,887 + HMPREF1058_RS06040 0.80 +2.9 18,887 + HMPREF1058_RS06040 0.80 +1.2 18,887 + HMPREF1058_RS06040 0.80 +1.1 18,887 + HMPREF1058_RS06040 0.80 +2.8 18,887 + HMPREF1058_RS06040 0.80 -2.2 18,957 + HMPREF1058_RS06040 0.84 +1.1 18,957 + HMPREF1058_RS06040 0.84 -1.3 18,957 + HMPREF1058_RS06040 0.84 -0.8 19,002 + HMPREF1058_RS06040 0.87 +1.0 19,002 + -0.3 19,018 + HMPREF1058_RS06040 0.88 +1.0 19,137 + +1.5 19,137 + +0.3 19,155 + +1.6 19,217 + +0.5 19,225 + +1.5 19,225 + -1.5 19,254 + +1.8 19,263 + +0.4 19,325 + +2.2 19,326 - +1.7 19,460 - HMPREF1058_RS06035 0.17 +2.6 19,670 + HMPREF1058_RS06035 0.33 +1.6 19,694 + HMPREF1058_RS06035 0.34 +0.2 19,754 + HMPREF1058_RS06035 0.39 +2.7 19,755 - HMPREF1058_RS06035 0.39 +0.8 19,755 - HMPREF1058_RS06035 0.39 -0.3 19,986 + HMPREF1058_RS06035 0.57 +2.8 20,020 - HMPREF1058_RS06035 0.59 -1.0 20,054 + HMPREF1058_RS06035 0.62 +1.4 20,055 - HMPREF1058_RS06035 0.62 -0.5 20,055 - HMPREF1058_RS06035 0.62 +3.4 20,150 + HMPREF1058_RS06035 0.69 +2.1 20,412 + HMPREF1058_RS06035 0.89 +1.4 20,413 - HMPREF1058_RS06035 0.89 +2.0 20,413 - HMPREF1058_RS06035 0.89 +2.0 20,421 + +0.3 20,422 - -1.4 20,422 - +1.5 20,422 - +1.8 20,470 - -0.6 20,555 + +1.9 20,556 - -0.2 20,558 - +1.4 20,642 - +0.3 20,695 - -0.2 20,716 + +0.5 20,797 + +1.8 21,027 + HMPREF1058_RS06030 0.28 +0.3 21,074 + HMPREF1058_RS06030 0.32 +2.5 21,074 + HMPREF1058_RS06030 0.32 +0.0 21,126 + HMPREF1058_RS06030 0.36 +0.0 21,126 + HMPREF1058_RS06030 0.36 -0.3 21,126 + HMPREF1058_RS06030 0.36 -0.6 21,126 + HMPREF1058_RS06030 0.36 +0.4 21,127 - HMPREF1058_RS06030 0.36 -0.0 21,127 - HMPREF1058_RS06030 0.36 +0.8 21,127 - HMPREF1058_RS06030 0.36 +0.4 21,128 + HMPREF1058_RS06030 0.36 -2.4 21,148 + HMPREF1058_RS06030 0.38 +0.4 21,160 + HMPREF1058_RS06030 0.39 +0.3 21,267 + HMPREF1058_RS06030 0.48 -0.1 21,292 - HMPREF1058_RS06030 0.50 +0.6 21,296 - HMPREF1058_RS06030 0.51 +1.8 21,403 + HMPREF1058_RS06030 0.60 -2.3 21,404 - HMPREF1058_RS06030 0.60 -0.4 21,404 - HMPREF1058_RS06030 0.60 -0.6 21,404 - HMPREF1058_RS06030 0.60 +0.5 21,417 + HMPREF1058_RS06030 0.61 -2.0 21,418 - HMPREF1058_RS06030 0.61 +0.1 21,420 + HMPREF1058_RS06030 0.61 -1.0 21,421 - HMPREF1058_RS06030 0.61 +1.7 21,422 + HMPREF1058_RS06030 0.62 -0.1 21,423 - HMPREF1058_RS06030 0.62 +0.8 21,505 - HMPREF1058_RS06030 0.69 -1.3
Or see this region's nucleotide sequence