Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05970 and HMPREF1058_RS05965 are separated by 256 nucleotides HMPREF1058_RS05965 and HMPREF1058_RS05960 are separated by 401 nucleotides HMPREF1058_RS05960 and HMPREF1058_RS05955 are separated by 8 nucleotides
HMPREF1058_RS05970: HMPREF1058_RS05970 - bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase, at 36,991 to 40,425
_RS05970
HMPREF1058_RS05965: HMPREF1058_RS05965 - hypothetical protein, at 40,682 to 41,287
_RS05965
HMPREF1058_RS05960: HMPREF1058_RS05960 - YjbQ family protein, at 41,689 to 42,102
_RS05960
HMPREF1058_RS05955: HMPREF1058_RS05955 - hypothetical protein, at 42,111 to 43,313
_RS05955
Position (kb) 40
41
42 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 39.782 kb on + strand, within HMPREF1058_RS05970 at 39.783 kb on - strand, within HMPREF1058_RS05970 at 39.809 kb on - strand, within HMPREF1058_RS05970 at 39.820 kb on - strand, within HMPREF1058_RS05970 at 39.820 kb on - strand, within HMPREF1058_RS05970 at 39.932 kb on - strand, within HMPREF1058_RS05970 at 40.043 kb on - strand, within HMPREF1058_RS05970 at 40.119 kb on + strand at 40.207 kb on + strand at 40.222 kb on - strand at 40.306 kb on + strand at 40.319 kb on + strand at 40.446 kb on + strand at 40.454 kb on - strand at 40.499 kb on + strand at 40.568 kb on + strand at 40.588 kb on + strand at 40.625 kb on - strand at 40.705 kb on + strand at 40.824 kb on + strand, within HMPREF1058_RS05965 at 40.824 kb on + strand, within HMPREF1058_RS05965 at 40.934 kb on + strand, within HMPREF1058_RS05965 at 40.934 kb on + strand, within HMPREF1058_RS05965 at 41.019 kb on - strand, within HMPREF1058_RS05965 at 41.035 kb on + strand, within HMPREF1058_RS05965 at 41.035 kb on + strand, within HMPREF1058_RS05965 at 41.039 kb on + strand, within HMPREF1058_RS05965 at 41.040 kb on - strand, within HMPREF1058_RS05965 at 41.075 kb on + strand, within HMPREF1058_RS05965 at 41.077 kb on + strand, within HMPREF1058_RS05965 at 41.101 kb on - strand, within HMPREF1058_RS05965 at 41.106 kb on - strand, within HMPREF1058_RS05965 at 41.106 kb on - strand, within HMPREF1058_RS05965 at 41.108 kb on - strand, within HMPREF1058_RS05965 at 41.113 kb on - strand, within HMPREF1058_RS05965 at 41.160 kb on - strand, within HMPREF1058_RS05965 at 41.237 kb on - strand at 41.258 kb on - strand at 41.354 kb on + strand at 41.372 kb on - strand at 41.433 kb on + strand at 41.433 kb on + strand at 41.434 kb on - strand at 41.481 kb on - strand at 41.481 kb on - strand at 41.536 kb on - strand at 41.549 kb on + strand at 41.549 kb on + strand at 41.550 kb on - strand at 41.550 kb on - strand at 41.550 kb on - strand at 41.550 kb on - strand at 41.550 kb on - strand at 41.551 kb on + strand at 41.554 kb on - strand at 41.706 kb on + strand at 41.754 kb on - strand, within HMPREF1058_RS05960 at 41.864 kb on - strand, within HMPREF1058_RS05960 at 41.864 kb on - strand, within HMPREF1058_RS05960 at 41.868 kb on + strand, within HMPREF1058_RS05960 at 41.868 kb on + strand, within HMPREF1058_RS05960 at 41.879 kb on + strand, within HMPREF1058_RS05960 at 41.880 kb on - strand, within HMPREF1058_RS05960 at 41.880 kb on - strand, within HMPREF1058_RS05960 at 41.973 kb on + strand, within HMPREF1058_RS05960 at 42.045 kb on + strand, within HMPREF1058_RS05960 at 42.106 kb on + strand at 42.107 kb on - strand at 42.120 kb on - strand at 42.129 kb on + strand at 42.131 kb on + strand at 42.131 kb on + strand at 42.131 kb on + strand at 42.132 kb on - strand at 42.132 kb on - strand at 42.132 kb on - strand at 42.144 kb on - strand at 42.151 kb on - strand at 42.165 kb on - strand at 42.174 kb on + strand at 42.199 kb on - strand at 42.257 kb on + strand, within HMPREF1058_RS05955 at 42.263 kb on + strand, within HMPREF1058_RS05955 at 42.265 kb on + strand, within HMPREF1058_RS05955 at 42.266 kb on - strand, within HMPREF1058_RS05955
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 39,782 + HMPREF1058_RS05970 0.81 -0.3 39,783 - HMPREF1058_RS05970 0.81 -1.9 39,809 - HMPREF1058_RS05970 0.82 -0.2 39,820 - HMPREF1058_RS05970 0.82 +0.3 39,820 - HMPREF1058_RS05970 0.82 +0.5 39,932 - HMPREF1058_RS05970 0.86 -1.9 40,043 - HMPREF1058_RS05970 0.89 -0.6 40,119 + +1.8 40,207 + -1.2 40,222 - +0.0 40,306 + -2.2 40,319 + -1.0 40,446 + +0.5 40,454 - -0.6 40,499 + +0.0 40,568 + +1.8 40,588 + -0.9 40,625 - -0.4 40,705 + +0.8 40,824 + HMPREF1058_RS05965 0.23 -0.9 40,824 + HMPREF1058_RS05965 0.23 -0.6 40,934 + HMPREF1058_RS05965 0.42 +1.3 40,934 + HMPREF1058_RS05965 0.42 -2.0 41,019 - HMPREF1058_RS05965 0.56 +1.4 41,035 + HMPREF1058_RS05965 0.58 +0.3 41,035 + HMPREF1058_RS05965 0.58 -0.7 41,039 + HMPREF1058_RS05965 0.59 +1.1 41,040 - HMPREF1058_RS05965 0.59 -0.2 41,075 + HMPREF1058_RS05965 0.65 +1.8 41,077 + HMPREF1058_RS05965 0.65 +1.5 41,101 - HMPREF1058_RS05965 0.69 -1.0 41,106 - HMPREF1058_RS05965 0.70 +0.3 41,106 - HMPREF1058_RS05965 0.70 +1.5 41,108 - HMPREF1058_RS05965 0.70 +0.7 41,113 - HMPREF1058_RS05965 0.71 -0.6 41,160 - HMPREF1058_RS05965 0.79 +0.0 41,237 - +0.3 41,258 - +1.6 41,354 + -0.4 41,372 - -0.0 41,433 + -0.8 41,433 + +0.1 41,434 - -1.0 41,481 - +0.6 41,481 - +1.3 41,536 - -0.3 41,549 + +0.3 41,549 + +1.8 41,550 - +0.2 41,550 - -0.8 41,550 - +0.1 41,550 - -1.5 41,550 - +0.9 41,551 + -1.1 41,554 - -0.3 41,706 + -0.6 41,754 - HMPREF1058_RS05960 0.16 -0.5 41,864 - HMPREF1058_RS05960 0.42 -1.3 41,864 - HMPREF1058_RS05960 0.42 -0.6 41,868 + HMPREF1058_RS05960 0.43 +2.6 41,868 + HMPREF1058_RS05960 0.43 -0.3 41,879 + HMPREF1058_RS05960 0.46 -1.2 41,880 - HMPREF1058_RS05960 0.46 -0.6 41,880 - HMPREF1058_RS05960 0.46 +0.7 41,973 + HMPREF1058_RS05960 0.69 -0.4 42,045 + HMPREF1058_RS05960 0.86 +0.3 42,106 + -2.5 42,107 - -0.7 42,120 - +2.5 42,129 + -2.1 42,131 + -1.6 42,131 + +1.8 42,131 + +0.3 42,132 - +1.3 42,132 - +1.9 42,132 - -0.9 42,144 - -0.9 42,151 - +0.1 42,165 - -0.0 42,174 + -0.4 42,199 - +1.5 42,257 + HMPREF1058_RS05955 0.12 -1.1 42,263 + HMPREF1058_RS05955 0.13 +2.8 42,265 + HMPREF1058_RS05955 0.13 -0.6 42,266 - HMPREF1058_RS05955 0.13 -0.3
Or see this region's nucleotide sequence