Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05895 and HMPREF1058_RS05890 are separated by 651 nucleotides HMPREF1058_RS05890 and HMPREF1058_RS05885 overlap by 11 nucleotides HMPREF1058_RS05885 and HMPREF1058_RS05880 overlap by 4 nucleotides
HMPREF1058_RS05895: HMPREF1058_RS05895 - class I SAM-dependent methyltransferase, at 53,778 to 54,566
_RS05895
HMPREF1058_RS05890: HMPREF1058_RS05890 - class I SAM-dependent rRNA methyltransferase, at 55,218 to 56,402
_RS05890
HMPREF1058_RS05885: HMPREF1058_RS05885 - 3'-5' exonuclease domain-containing protein 2, at 56,392 to 57,042
_RS05885
HMPREF1058_RS05880: HMPREF1058_RS05880 - DUF5063 domain-containing protein, at 57,039 to 57,602
_RS05880
Position (kb) 55
56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 54.266 kb on - strand, within HMPREF1058_RS05895 at 54.277 kb on + strand, within HMPREF1058_RS05895 at 54.323 kb on + strand, within HMPREF1058_RS05895 at 54.323 kb on + strand, within HMPREF1058_RS05895 at 54.364 kb on + strand, within HMPREF1058_RS05895 at 54.364 kb on + strand, within HMPREF1058_RS05895 at 54.365 kb on - strand, within HMPREF1058_RS05895 at 54.421 kb on + strand, within HMPREF1058_RS05895 at 54.422 kb on - strand, within HMPREF1058_RS05895 at 54.422 kb on - strand, within HMPREF1058_RS05895 at 54.579 kb on - strand at 54.584 kb on - strand at 54.584 kb on - strand at 54.607 kb on - strand at 54.609 kb on - strand at 54.613 kb on - strand at 54.624 kb on - strand at 54.624 kb on - strand at 54.637 kb on + strand at 54.726 kb on + strand at 54.728 kb on + strand at 54.729 kb on - strand at 54.729 kb on - strand at 54.738 kb on + strand at 54.751 kb on - strand at 54.773 kb on - strand at 54.785 kb on + strand at 54.819 kb on + strand at 54.820 kb on - strand at 54.829 kb on + strand at 54.829 kb on + strand at 54.830 kb on - strand at 54.830 kb on - strand at 54.830 kb on - strand at 54.831 kb on + strand at 54.831 kb on + strand at 54.831 kb on + strand at 54.834 kb on - strand at 54.919 kb on + strand at 54.983 kb on + strand at 54.983 kb on + strand at 54.983 kb on + strand at 54.983 kb on + strand at 54.985 kb on + strand at 54.990 kb on + strand at 54.990 kb on + strand at 54.991 kb on - strand at 54.992 kb on + strand at 54.993 kb on - strand at 55.041 kb on + strand at 55.041 kb on + strand at 55.050 kb on + strand at 55.050 kb on + strand at 55.050 kb on + strand at 55.051 kb on - strand at 55.157 kb on + strand at 55.188 kb on + strand at 55.188 kb on + strand at 55.189 kb on - strand at 55.189 kb on - strand at 55.189 kb on - strand at 55.193 kb on + strand at 55.194 kb on - strand at 55.195 kb on + strand at 55.196 kb on - strand at 55.229 kb on - strand at 55.229 kb on - strand at 55.267 kb on + strand at 55.272 kb on - strand at 55.347 kb on - strand, within HMPREF1058_RS05890 at 55.351 kb on - strand, within HMPREF1058_RS05890 at 55.439 kb on + strand, within HMPREF1058_RS05890 at 55.519 kb on - strand, within HMPREF1058_RS05890 at 55.528 kb on + strand, within HMPREF1058_RS05890 at 55.573 kb on + strand, within HMPREF1058_RS05890 at 55.710 kb on - strand, within HMPREF1058_RS05890 at 55.710 kb on - strand, within HMPREF1058_RS05890 at 55.721 kb on + strand, within HMPREF1058_RS05890 at 55.722 kb on - strand, within HMPREF1058_RS05890 at 55.728 kb on + strand, within HMPREF1058_RS05890 at 55.729 kb on - strand, within HMPREF1058_RS05890 at 55.729 kb on - strand, within HMPREF1058_RS05890 at 55.733 kb on + strand, within HMPREF1058_RS05890 at 55.874 kb on + strand, within HMPREF1058_RS05890 at 55.874 kb on + strand, within HMPREF1058_RS05890 at 55.931 kb on - strand, within HMPREF1058_RS05890 at 55.948 kb on - strand, within HMPREF1058_RS05890 at 56.041 kb on + strand, within HMPREF1058_RS05890 at 56.042 kb on - strand, within HMPREF1058_RS05890 at 56.043 kb on + strand at 56.043 kb on + strand, within HMPREF1058_RS05890 at 56.163 kb on - strand, within HMPREF1058_RS05890 at 56.163 kb on - strand, within HMPREF1058_RS05890 at 56.223 kb on - strand, within HMPREF1058_RS05890 at 56.223 kb on - strand, within HMPREF1058_RS05890 at 56.223 kb on - strand, within HMPREF1058_RS05890 at 56.230 kb on - strand, within HMPREF1058_RS05890 at 56.250 kb on + strand, within HMPREF1058_RS05890 at 56.250 kb on + strand, within HMPREF1058_RS05890 at 56.252 kb on + strand, within HMPREF1058_RS05890 at 56.252 kb on + strand, within HMPREF1058_RS05890 at 56.253 kb on - strand, within HMPREF1058_RS05890 at 56.284 kb on - strand at 56.284 kb on - strand at 56.394 kb on - strand at 56.407 kb on - strand at 56.423 kb on - strand at 56.520 kb on - strand, within HMPREF1058_RS05885 at 56.521 kb on - strand, within HMPREF1058_RS05885 at 56.648 kb on - strand, within HMPREF1058_RS05885 at 56.651 kb on + strand, within HMPREF1058_RS05885 at 56.652 kb on - strand, within HMPREF1058_RS05885 at 56.652 kb on - strand, within HMPREF1058_RS05885 at 56.652 kb on - strand, within HMPREF1058_RS05885 at 56.659 kb on + strand, within HMPREF1058_RS05885 at 56.660 kb on - strand, within HMPREF1058_RS05885 at 56.740 kb on + strand, within HMPREF1058_RS05885 at 56.741 kb on - strand, within HMPREF1058_RS05885 at 56.788 kb on - strand, within HMPREF1058_RS05885 at 56.821 kb on - strand, within HMPREF1058_RS05885 at 56.830 kb on - strand, within HMPREF1058_RS05885 at 56.854 kb on - strand, within HMPREF1058_RS05885 at 56.906 kb on - strand, within HMPREF1058_RS05885 at 56.925 kb on - strand, within HMPREF1058_RS05885 at 57.005 kb on - strand at 57.015 kb on + strand at 57.046 kb on - strand at 57.097 kb on + strand, within HMPREF1058_RS05880 at 57.097 kb on + strand, within HMPREF1058_RS05880 at 57.122 kb on + strand, within HMPREF1058_RS05880 at 57.326 kb on - strand, within HMPREF1058_RS05880 at 57.367 kb on - strand, within HMPREF1058_RS05880
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 54,266 - HMPREF1058_RS05895 0.62 +0.9 54,277 + HMPREF1058_RS05895 0.63 -0.3 54,323 + HMPREF1058_RS05895 0.69 +1.8 54,323 + HMPREF1058_RS05895 0.69 -1.2 54,364 + HMPREF1058_RS05895 0.74 -0.7 54,364 + HMPREF1058_RS05895 0.74 -2.6 54,365 - HMPREF1058_RS05895 0.74 -3.4 54,421 + HMPREF1058_RS05895 0.81 -1.9 54,422 - HMPREF1058_RS05895 0.82 +0.8 54,422 - HMPREF1058_RS05895 0.82 -0.2 54,579 - -1.3 54,584 - +1.0 54,584 - -2.0 54,607 - +0.5 54,609 - -0.4 54,613 - +0.5 54,624 - +0.6 54,624 - -1.5 54,637 + +1.3 54,726 + -0.2 54,728 + +0.0 54,729 - -1.3 54,729 - -2.7 54,738 + -0.5 54,751 - +0.0 54,773 - -1.5 54,785 + -1.5 54,819 + -0.5 54,820 - -0.3 54,829 + +0.8 54,829 + +0.3 54,830 - -0.8 54,830 - -0.3 54,830 - -0.5 54,831 + +1.3 54,831 + +1.3 54,831 + -0.2 54,834 - +0.8 54,919 + +1.6 54,983 + +0.7 54,983 + -0.8 54,983 + +1.5 54,983 + -1.4 54,985 + +0.1 54,990 + +0.4 54,990 + +0.8 54,991 - -0.4 54,992 + +0.9 54,993 - -1.0 55,041 + -1.9 55,041 + -2.2 55,050 + -1.4 55,050 + -1.6 55,050 + +3.6 55,051 - +0.4 55,157 + +0.0 55,188 + +0.0 55,188 + -0.7 55,189 - +0.3 55,189 - +0.9 55,189 - -0.7 55,193 + +0.5 55,194 - +0.3 55,195 + +0.3 55,196 - +1.5 55,229 - -1.2 55,229 - +1.3 55,267 + +2.1 55,272 - +1.5 55,347 - HMPREF1058_RS05890 0.11 +1.9 55,351 - HMPREF1058_RS05890 0.11 +0.5 55,439 + HMPREF1058_RS05890 0.19 +0.4 55,519 - HMPREF1058_RS05890 0.25 +0.5 55,528 + HMPREF1058_RS05890 0.26 +0.2 55,573 + HMPREF1058_RS05890 0.30 -0.4 55,710 - HMPREF1058_RS05890 0.42 +1.1 55,710 - HMPREF1058_RS05890 0.42 +0.9 55,721 + HMPREF1058_RS05890 0.42 +0.3 55,722 - HMPREF1058_RS05890 0.43 +1.1 55,728 + HMPREF1058_RS05890 0.43 -0.3 55,729 - HMPREF1058_RS05890 0.43 +1.5 55,729 - HMPREF1058_RS05890 0.43 +0.7 55,733 + HMPREF1058_RS05890 0.43 +1.5 55,874 + HMPREF1058_RS05890 0.55 +0.4 55,874 + HMPREF1058_RS05890 0.55 +2.2 55,931 - HMPREF1058_RS05890 0.60 -0.0 55,948 - HMPREF1058_RS05890 0.62 +1.2 56,041 + HMPREF1058_RS05890 0.69 -0.3 56,042 - HMPREF1058_RS05890 0.70 +0.5 56,043 + +2.8 56,043 + HMPREF1058_RS05890 0.70 +0.7 56,163 - HMPREF1058_RS05890 0.80 +0.2 56,163 - HMPREF1058_RS05890 0.80 +0.7 56,223 - HMPREF1058_RS05890 0.85 -0.7 56,223 - HMPREF1058_RS05890 0.85 +2.1 56,223 - HMPREF1058_RS05890 0.85 +3.0 56,230 - HMPREF1058_RS05890 0.85 +1.6 56,250 + HMPREF1058_RS05890 0.87 +0.3 56,250 + HMPREF1058_RS05890 0.87 -0.7 56,252 + HMPREF1058_RS05890 0.87 -0.4 56,252 + HMPREF1058_RS05890 0.87 +0.2 56,253 - HMPREF1058_RS05890 0.87 +0.3 56,284 - +0.2 56,284 - +2.8 56,394 - +2.3 56,407 - +1.3 56,423 - +1.2 56,520 - HMPREF1058_RS05885 0.20 -0.9 56,521 - HMPREF1058_RS05885 0.20 +2.8 56,648 - HMPREF1058_RS05885 0.39 -0.0 56,651 + HMPREF1058_RS05885 0.40 -2.2 56,652 - HMPREF1058_RS05885 0.40 -0.5 56,652 - HMPREF1058_RS05885 0.40 +1.4 56,652 - HMPREF1058_RS05885 0.40 -0.8 56,659 + HMPREF1058_RS05885 0.41 +0.7 56,660 - HMPREF1058_RS05885 0.41 -0.2 56,740 + HMPREF1058_RS05885 0.53 +1.3 56,741 - HMPREF1058_RS05885 0.54 +0.5 56,788 - HMPREF1058_RS05885 0.61 -0.9 56,821 - HMPREF1058_RS05885 0.66 -1.6 56,830 - HMPREF1058_RS05885 0.67 -2.4 56,854 - HMPREF1058_RS05885 0.71 +1.0 56,906 - HMPREF1058_RS05885 0.79 +0.5 56,925 - HMPREF1058_RS05885 0.82 -0.1 57,005 - +0.2 57,015 + -1.3 57,046 - -0.3 57,097 + HMPREF1058_RS05880 0.10 +0.0 57,097 + HMPREF1058_RS05880 0.10 -1.2 57,122 + HMPREF1058_RS05880 0.15 +0.3 57,326 - HMPREF1058_RS05880 0.51 -0.4 57,367 - HMPREF1058_RS05880 0.58 -2.5
Or see this region's nucleotide sequence