Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05745

Experiment: Galactan from Potato 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS05750 and HMPREF1058_RS05745 are separated by 168 nucleotidesHMPREF1058_RS05745 and HMPREF1058_RS05740 are separated by 167 nucleotides HMPREF1058_RS05750: HMPREF1058_RS05750 - helix-turn-helix domain-containing protein, at 87,919 to 88,797 _RS05750 HMPREF1058_RS05745: HMPREF1058_RS05745 - site-specific integrase, at 88,966 to 90,081 _RS05745 HMPREF1058_RS05740: HMPREF1058_RS05740 - hypothetical protein, at 90,249 to 91,022 _RS05740 Position (kb) 88 89 90 91Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 88.067 kb on + strand, within HMPREF1058_RS05750at 88.139 kb on + strand, within HMPREF1058_RS05750at 88.144 kb on - strand, within HMPREF1058_RS05750at 88.150 kb on + strand, within HMPREF1058_RS05750at 88.150 kb on + strand, within HMPREF1058_RS05750at 88.150 kb on + strand, within HMPREF1058_RS05750at 88.151 kb on - strand, within HMPREF1058_RS05750at 88.151 kb on - strand, within HMPREF1058_RS05750at 88.154 kb on + strand, within HMPREF1058_RS05750at 88.154 kb on + strand, within HMPREF1058_RS05750at 88.154 kb on + strand, within HMPREF1058_RS05750at 88.154 kb on + strand, within HMPREF1058_RS05750at 88.154 kb on + strand, within HMPREF1058_RS05750at 88.155 kb on - strand, within HMPREF1058_RS05750at 88.155 kb on - strand, within HMPREF1058_RS05750at 88.158 kb on + strand, within HMPREF1058_RS05750at 88.258 kb on + strand, within HMPREF1058_RS05750at 88.304 kb on - strand, within HMPREF1058_RS05750at 88.361 kb on - strand, within HMPREF1058_RS05750at 88.362 kb on + strand, within HMPREF1058_RS05750at 88.409 kb on - strand, within HMPREF1058_RS05750at 88.412 kb on - strand, within HMPREF1058_RS05750at 88.448 kb on - strand, within HMPREF1058_RS05750at 88.553 kb on + strand, within HMPREF1058_RS05750at 88.554 kb on - strand, within HMPREF1058_RS05750at 88.554 kb on - strand, within HMPREF1058_RS05750at 88.645 kb on + strand, within HMPREF1058_RS05750at 88.807 kb on - strandat 88.824 kb on + strandat 88.845 kb on + strandat 88.913 kb on - strandat 88.939 kb on - strandat 88.960 kb on - strandat 88.986 kb on - strandat 88.991 kb on + strandat 89.039 kb on - strandat 89.097 kb on + strand, within HMPREF1058_RS05745at 89.098 kb on - strand, within HMPREF1058_RS05745at 89.101 kb on + strand, within HMPREF1058_RS05745at 89.102 kb on - strand, within HMPREF1058_RS05745at 89.150 kb on + strand, within HMPREF1058_RS05745at 89.257 kb on + strand, within HMPREF1058_RS05745at 89.305 kb on + strand, within HMPREF1058_RS05745at 89.550 kb on - strand, within HMPREF1058_RS05745at 89.561 kb on - strand, within HMPREF1058_RS05745at 89.728 kb on - strand, within HMPREF1058_RS05745at 89.798 kb on - strand, within HMPREF1058_RS05745at 89.856 kb on - strand, within HMPREF1058_RS05745at 90.013 kb on + strandat 90.112 kb on + strandat 90.113 kb on - strandat 90.138 kb on - strandat 90.188 kb on - strandat 90.189 kb on + strandat 90.211 kb on + strandat 90.211 kb on + strandat 90.212 kb on - strandat 90.246 kb on + strandat 90.247 kb on - strandat 90.247 kb on - strandat 90.247 kb on - strandat 90.257 kb on + strandat 90.315 kb on + strandat 90.316 kb on - strandat 90.316 kb on - strandat 90.359 kb on + strand, within HMPREF1058_RS05740at 90.359 kb on + strand, within HMPREF1058_RS05740at 90.438 kb on + strand, within HMPREF1058_RS05740at 90.575 kb on - strand, within HMPREF1058_RS05740at 90.575 kb on - strand, within HMPREF1058_RS05740at 90.583 kb on - strand, within HMPREF1058_RS05740at 90.631 kb on + strand, within HMPREF1058_RS05740at 90.657 kb on + strand, within HMPREF1058_RS05740at 90.661 kb on + strand, within HMPREF1058_RS05740at 90.698 kb on + strand, within HMPREF1058_RS05740at 90.726 kb on + strand, within HMPREF1058_RS05740at 90.726 kb on + strand, within HMPREF1058_RS05740at 90.745 kb on - strand, within HMPREF1058_RS05740at 90.751 kb on + strand, within HMPREF1058_RS05740at 90.753 kb on + strand, within HMPREF1058_RS05740at 90.775 kb on + strand, within HMPREF1058_RS05740at 90.779 kb on + strand, within HMPREF1058_RS05740at 90.779 kb on + strand, within HMPREF1058_RS05740at 90.780 kb on - strand, within HMPREF1058_RS05740at 90.892 kb on + strand, within HMPREF1058_RS05740at 90.965 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C)
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88,067 + HMPREF1058_RS05750 0.17 +0.4
88,139 + HMPREF1058_RS05750 0.25 +0.0
88,144 - HMPREF1058_RS05750 0.26 +1.8
88,150 + HMPREF1058_RS05750 0.26 +0.2
88,150 + HMPREF1058_RS05750 0.26 +0.7
88,150 + HMPREF1058_RS05750 0.26 +0.1
88,151 - HMPREF1058_RS05750 0.26 -1.4
88,151 - HMPREF1058_RS05750 0.26 -0.8
88,154 + HMPREF1058_RS05750 0.27 -1.7
88,154 + HMPREF1058_RS05750 0.27 -0.7
88,154 + HMPREF1058_RS05750 0.27 +0.8
88,154 + HMPREF1058_RS05750 0.27 -0.5
88,154 + HMPREF1058_RS05750 0.27 -1.2
88,155 - HMPREF1058_RS05750 0.27 -1.0
88,155 - HMPREF1058_RS05750 0.27 -1.3
88,158 + HMPREF1058_RS05750 0.27 -0.7
88,258 + HMPREF1058_RS05750 0.39 -3.4
88,304 - HMPREF1058_RS05750 0.44 -0.1
88,361 - HMPREF1058_RS05750 0.50 +0.2
88,362 + HMPREF1058_RS05750 0.50 +0.4
88,409 - HMPREF1058_RS05750 0.56 +0.0
88,412 - HMPREF1058_RS05750 0.56 -1.2
88,448 - HMPREF1058_RS05750 0.60 +1.2
88,553 + HMPREF1058_RS05750 0.72 -2.5
88,554 - HMPREF1058_RS05750 0.72 -0.8
88,554 - HMPREF1058_RS05750 0.72 -0.2
88,645 + HMPREF1058_RS05750 0.83 -1.4
88,807 - -0.7
88,824 + +1.7
88,845 + -3.0
88,913 - -1.5
88,939 - +0.1
88,960 - +1.3
88,986 - -0.5
88,991 + +0.6
89,039 - -1.2
89,097 + HMPREF1058_RS05745 0.12 -0.7
89,098 - HMPREF1058_RS05745 0.12 +1.0
89,101 + HMPREF1058_RS05745 0.12 +0.3
89,102 - HMPREF1058_RS05745 0.12 -0.7
89,150 + HMPREF1058_RS05745 0.16 +0.1
89,257 + HMPREF1058_RS05745 0.26 +0.8
89,305 + HMPREF1058_RS05745 0.30 +2.3
89,550 - HMPREF1058_RS05745 0.52 -0.6
89,561 - HMPREF1058_RS05745 0.53 -0.5
89,728 - HMPREF1058_RS05745 0.68 +1.7
89,798 - HMPREF1058_RS05745 0.75 +0.1
89,856 - HMPREF1058_RS05745 0.80 +0.2
90,013 + -0.5
90,112 + +0.3
90,113 - +0.5
90,138 - -0.8
90,188 - +0.3
90,189 + +1.3
90,211 + -0.5
90,211 + -2.3
90,212 - -1.5
90,246 + +1.7
90,247 - -0.8
90,247 - -0.2
90,247 - -0.4
90,257 + -0.2
90,315 + -1.0
90,316 - -0.3
90,316 - -0.4
90,359 + HMPREF1058_RS05740 0.14 +0.3
90,359 + HMPREF1058_RS05740 0.14 -0.4
90,438 + HMPREF1058_RS05740 0.24 -0.7
90,575 - HMPREF1058_RS05740 0.42 -0.8
90,575 - HMPREF1058_RS05740 0.42 -1.3
90,583 - HMPREF1058_RS05740 0.43 -1.3
90,631 + HMPREF1058_RS05740 0.49 -0.3
90,657 + HMPREF1058_RS05740 0.53 +0.7
90,661 + HMPREF1058_RS05740 0.53 -0.5
90,698 + HMPREF1058_RS05740 0.58 +2.1
90,726 + HMPREF1058_RS05740 0.62 -0.9
90,726 + HMPREF1058_RS05740 0.62 +1.1
90,745 - HMPREF1058_RS05740 0.64 -0.5
90,751 + HMPREF1058_RS05740 0.65 +0.8
90,753 + HMPREF1058_RS05740 0.65 -2.0
90,775 + HMPREF1058_RS05740 0.68 +0.1
90,779 + HMPREF1058_RS05740 0.68 +0.6
90,779 + HMPREF1058_RS05740 0.68 -0.6
90,780 - HMPREF1058_RS05740 0.69 -1.8
90,892 + HMPREF1058_RS05740 0.83 +0.3
90,965 - -0.2

Or see this region's nucleotide sequence