Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS0119835 and HMPREF1058_RS05695 are separated by 3 nucleotides HMPREF1058_RS05695 and HMPREF1058_RS05690 are separated by 142 nucleotides HMPREF1058_RS05690 and HMPREF1058_RS20935 are separated by 374 nucleotides
HMPREF1058_RS0119835: HMPREF1058_RS0119835 - type II toxin-antitoxin system HipA family toxin, at 102,132 to 103,395
_RS0119835
HMPREF1058_RS05695: HMPREF1058_RS05695 - helix-turn-helix domain-containing protein, at 103,399 to 103,719
_RS05695
HMPREF1058_RS05690: HMPREF1058_RS05690 - hypothetical protein, at 103,862 to 104,137
_RS05690
HMPREF1058_RS20935: HMPREF1058_RS20935 - helix-turn-helix domain-containing protein, at 104,512 to 105,448
_RS20935
Position (kb) 103
104 Strain fitness (log2 ratio) -1
0
1
2
3 at 102.511 kb on - strand, within HMPREF1058_RS0119835 at 102.553 kb on + strand, within HMPREF1058_RS0119835 at 102.566 kb on + strand, within HMPREF1058_RS0119835 at 102.588 kb on - strand, within HMPREF1058_RS0119835 at 102.664 kb on - strand, within HMPREF1058_RS0119835 at 102.664 kb on - strand, within HMPREF1058_RS0119835 at 102.714 kb on + strand, within HMPREF1058_RS0119835 at 102.715 kb on - strand, within HMPREF1058_RS0119835 at 102.801 kb on - strand, within HMPREF1058_RS0119835 at 102.801 kb on - strand, within HMPREF1058_RS0119835 at 102.803 kb on - strand, within HMPREF1058_RS0119835 at 102.998 kb on + strand, within HMPREF1058_RS0119835 at 103.191 kb on + strand, within HMPREF1058_RS0119835 at 103.211 kb on + strand, within HMPREF1058_RS0119835 at 103.230 kb on + strand, within HMPREF1058_RS0119835 at 103.330 kb on + strand at 103.378 kb on + strand at 103.378 kb on + strand at 103.378 kb on + strand at 103.378 kb on + strand at 103.378 kb on + strand at 103.379 kb on - strand at 103.379 kb on - strand at 103.379 kb on - strand at 103.379 kb on - strand at 103.379 kb on - strand at 103.379 kb on - strand at 103.379 kb on - strand at 103.379 kb on - strand at 103.379 kb on - strand at 103.379 kb on - strand at 103.382 kb on + strand at 103.383 kb on - strand at 103.383 kb on - strand at 103.384 kb on + strand at 103.505 kb on - strand, within HMPREF1058_RS05695 at 103.512 kb on - strand, within HMPREF1058_RS05695 at 103.645 kb on - strand, within HMPREF1058_RS05695 at 103.707 kb on + strand at 103.733 kb on - strand at 103.737 kb on + strand at 103.762 kb on - strand at 103.765 kb on + strand at 103.807 kb on - strand at 103.810 kb on - strand at 103.822 kb on + strand at 103.859 kb on - strand at 103.860 kb on - strand at 103.903 kb on + strand, within HMPREF1058_RS05690 at 103.903 kb on + strand, within HMPREF1058_RS05690 at 103.964 kb on - strand, within HMPREF1058_RS05690 at 103.987 kb on + strand, within HMPREF1058_RS05690 at 104.156 kb on + strand at 104.204 kb on - strand at 104.447 kb on + strand at 104.471 kb on + strand at 104.471 kb on + strand at 104.474 kb on - strand at 104.670 kb on - strand, within HMPREF1058_RS20935 at 104.683 kb on + strand, within HMPREF1058_RS20935 at 104.708 kb on + strand, within HMPREF1058_RS20935
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 102,511 - HMPREF1058_RS0119835 0.30 +0.3 102,553 + HMPREF1058_RS0119835 0.33 -1.3 102,566 + HMPREF1058_RS0119835 0.34 +2.3 102,588 - HMPREF1058_RS0119835 0.36 +0.6 102,664 - HMPREF1058_RS0119835 0.42 +1.8 102,664 - HMPREF1058_RS0119835 0.42 -0.3 102,714 + HMPREF1058_RS0119835 0.46 -0.9 102,715 - HMPREF1058_RS0119835 0.46 -1.7 102,801 - HMPREF1058_RS0119835 0.53 -0.4 102,801 - HMPREF1058_RS0119835 0.53 +1.0 102,803 - HMPREF1058_RS0119835 0.53 +1.0 102,998 + HMPREF1058_RS0119835 0.69 +3.2 103,191 + HMPREF1058_RS0119835 0.84 +0.6 103,211 + HMPREF1058_RS0119835 0.85 -1.1 103,230 + HMPREF1058_RS0119835 0.87 +0.2 103,330 + -0.6 103,378 + +1.1 103,378 + -0.2 103,378 + +0.3 103,378 + +0.0 103,378 + -1.5 103,379 - +0.1 103,379 - +0.5 103,379 - +0.8 103,379 - +0.6 103,379 - +1.3 103,379 - +1.5 103,379 - -0.1 103,379 - +1.4 103,379 - +0.9 103,379 - +2.5 103,382 + +0.4 103,383 - +0.1 103,383 - -0.5 103,384 + -0.2 103,505 - HMPREF1058_RS05695 0.33 +1.1 103,512 - HMPREF1058_RS05695 0.35 -0.5 103,645 - HMPREF1058_RS05695 0.77 +0.8 103,707 + +1.3 103,733 - -1.0 103,737 + +1.3 103,762 - -1.7 103,765 + -1.4 103,807 - -0.9 103,810 - -0.2 103,822 + -1.0 103,859 - -0.5 103,860 - -0.5 103,903 + HMPREF1058_RS05690 0.15 -1.2 103,903 + HMPREF1058_RS05690 0.15 +0.3 103,964 - HMPREF1058_RS05690 0.37 +0.0 103,987 + HMPREF1058_RS05690 0.45 +0.2 104,156 + -0.3 104,204 - +0.5 104,447 + +0.7 104,471 + +1.3 104,471 + -1.2 104,474 - +1.1 104,670 - HMPREF1058_RS20935 0.17 -0.3 104,683 + HMPREF1058_RS20935 0.18 -0.4 104,708 + HMPREF1058_RS20935 0.21 -0.5
Or see this region's nucleotide sequence