Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05520

Experiment: Galactan from Potato 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS05525 and HMPREF1058_RS05520 are separated by 96 nucleotidesHMPREF1058_RS05520 and HMPREF1058_RS20945 are separated by 10 nucleotides HMPREF1058_RS05525: HMPREF1058_RS05525 - toll/interleukin-1 receptor domain-containing protein, at 143,225 to 144,151 _RS05525 HMPREF1058_RS05520: HMPREF1058_RS05520 - DUF4357 domain-containing protein, at 144,248 to 144,427 _RS05520 HMPREF1058_RS20945: HMPREF1058_RS20945 - hypothetical protein, at 144,438 to 145,733 _RS20945 Position (kb) 144 145Strain fitness (log2 ratio) -2 -1 0 1 2 3at 143.248 kb on + strandat 143.331 kb on + strand, within HMPREF1058_RS05525at 143.593 kb on + strand, within HMPREF1058_RS05525at 143.601 kb on + strand, within HMPREF1058_RS05525at 143.613 kb on + strand, within HMPREF1058_RS05525at 143.613 kb on + strand, within HMPREF1058_RS05525at 143.615 kb on + strand, within HMPREF1058_RS05525at 143.687 kb on - strand, within HMPREF1058_RS05525at 143.796 kb on + strand, within HMPREF1058_RS05525at 143.796 kb on + strand, within HMPREF1058_RS05525at 143.797 kb on - strand, within HMPREF1058_RS05525at 143.845 kb on - strand, within HMPREF1058_RS05525at 143.927 kb on - strand, within HMPREF1058_RS05525at 143.941 kb on + strand, within HMPREF1058_RS05525at 143.953 kb on + strand, within HMPREF1058_RS05525at 143.979 kb on + strand, within HMPREF1058_RS05525at 143.995 kb on + strand, within HMPREF1058_RS05525at 143.995 kb on + strand, within HMPREF1058_RS05525at 143.995 kb on + strand, within HMPREF1058_RS05525at 144.007 kb on + strand, within HMPREF1058_RS05525at 144.094 kb on + strandat 144.099 kb on + strandat 144.105 kb on + strandat 144.105 kb on + strandat 144.131 kb on - strandat 144.148 kb on - strandat 144.176 kb on - strandat 144.391 kb on + strand, within HMPREF1058_RS05520at 144.432 kb on + strandat 144.435 kb on + strandat 144.458 kb on + strandat 144.458 kb on + strandat 144.590 kb on - strand, within HMPREF1058_RS20945at 144.593 kb on + strand, within HMPREF1058_RS20945at 144.594 kb on - strand, within HMPREF1058_RS20945at 144.601 kb on + strand, within HMPREF1058_RS20945at 144.602 kb on - strand, within HMPREF1058_RS20945at 144.638 kb on - strand, within HMPREF1058_RS20945at 144.638 kb on - strand, within HMPREF1058_RS20945at 144.644 kb on + strand, within HMPREF1058_RS20945at 144.645 kb on - strand, within HMPREF1058_RS20945at 144.658 kb on + strand, within HMPREF1058_RS20945at 144.801 kb on - strand, within HMPREF1058_RS20945at 144.886 kb on + strand, within HMPREF1058_RS20945at 144.920 kb on + strand, within HMPREF1058_RS20945at 144.923 kb on - strand, within HMPREF1058_RS20945at 144.932 kb on + strand, within HMPREF1058_RS20945at 144.932 kb on + strand, within HMPREF1058_RS20945at 144.962 kb on - strand, within HMPREF1058_RS20945at 145.001 kb on - strand, within HMPREF1058_RS20945at 145.046 kb on - strand, within HMPREF1058_RS20945at 145.069 kb on + strand, within HMPREF1058_RS20945at 145.069 kb on + strand, within HMPREF1058_RS20945at 145.070 kb on - strand, within HMPREF1058_RS20945at 145.070 kb on - strand, within HMPREF1058_RS20945at 145.130 kb on + strand, within HMPREF1058_RS20945at 145.169 kb on + strand, within HMPREF1058_RS20945at 145.187 kb on - strand, within HMPREF1058_RS20945at 145.190 kb on + strand, within HMPREF1058_RS20945at 145.196 kb on + strand, within HMPREF1058_RS20945at 145.257 kb on - strand, within HMPREF1058_RS20945at 145.271 kb on - strand, within HMPREF1058_RS20945at 145.388 kb on + strand, within HMPREF1058_RS20945at 145.400 kb on - strand, within HMPREF1058_RS20945at 145.400 kb on - strand, within HMPREF1058_RS20945at 145.407 kb on - strand, within HMPREF1058_RS20945

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C)
remove
143,248 + -0.0
143,331 + HMPREF1058_RS05525 0.11 +0.3
143,593 + HMPREF1058_RS05525 0.40 +0.8
143,601 + HMPREF1058_RS05525 0.41 +0.5
143,613 + HMPREF1058_RS05525 0.42 +0.3
143,613 + HMPREF1058_RS05525 0.42 -0.9
143,615 + HMPREF1058_RS05525 0.42 +0.7
143,687 - HMPREF1058_RS05525 0.50 -0.5
143,796 + HMPREF1058_RS05525 0.62 +0.7
143,796 + HMPREF1058_RS05525 0.62 +0.0
143,797 - HMPREF1058_RS05525 0.62 -2.1
143,845 - HMPREF1058_RS05525 0.67 +0.1
143,927 - HMPREF1058_RS05525 0.76 -0.1
143,941 + HMPREF1058_RS05525 0.77 -1.4
143,953 + HMPREF1058_RS05525 0.79 -0.7
143,979 + HMPREF1058_RS05525 0.81 +2.8
143,995 + HMPREF1058_RS05525 0.83 -0.5
143,995 + HMPREF1058_RS05525 0.83 +0.3
143,995 + HMPREF1058_RS05525 0.83 -0.3
144,007 + HMPREF1058_RS05525 0.84 -1.1
144,094 + -0.6
144,099 + +0.9
144,105 + +0.6
144,105 + -0.6
144,131 - -0.6
144,148 - -1.7
144,176 - +0.1
144,391 + HMPREF1058_RS05520 0.79 +1.2
144,432 + -0.1
144,435 + +0.0
144,458 + -0.0
144,458 + +1.4
144,590 - HMPREF1058_RS20945 0.12 -0.2
144,593 + HMPREF1058_RS20945 0.12 +1.5
144,594 - HMPREF1058_RS20945 0.12 -1.1
144,601 + HMPREF1058_RS20945 0.13 -2.1
144,602 - HMPREF1058_RS20945 0.13 +1.6
144,638 - HMPREF1058_RS20945 0.15 +1.2
144,638 - HMPREF1058_RS20945 0.15 -0.8
144,644 + HMPREF1058_RS20945 0.16 +0.0
144,645 - HMPREF1058_RS20945 0.16 -1.3
144,658 + HMPREF1058_RS20945 0.17 +0.5
144,801 - HMPREF1058_RS20945 0.28 -1.5
144,886 + HMPREF1058_RS20945 0.35 -2.3
144,920 + HMPREF1058_RS20945 0.37 -0.9
144,923 - HMPREF1058_RS20945 0.37 -0.4
144,932 + HMPREF1058_RS20945 0.38 +0.2
144,932 + HMPREF1058_RS20945 0.38 +2.2
144,962 - HMPREF1058_RS20945 0.40 +1.7
145,001 - HMPREF1058_RS20945 0.43 +1.1
145,046 - HMPREF1058_RS20945 0.47 +0.6
145,069 + HMPREF1058_RS20945 0.49 -0.2
145,069 + HMPREF1058_RS20945 0.49 +1.6
145,070 - HMPREF1058_RS20945 0.49 -0.8
145,070 - HMPREF1058_RS20945 0.49 +2.4
145,130 + HMPREF1058_RS20945 0.53 -0.5
145,169 + HMPREF1058_RS20945 0.56 -0.8
145,187 - HMPREF1058_RS20945 0.58 -0.8
145,190 + HMPREF1058_RS20945 0.58 -0.2
145,196 + HMPREF1058_RS20945 0.58 -0.2
145,257 - HMPREF1058_RS20945 0.63 -0.1
145,271 - HMPREF1058_RS20945 0.64 -0.5
145,388 + HMPREF1058_RS20945 0.73 -0.2
145,400 - HMPREF1058_RS20945 0.74 -1.9
145,400 - HMPREF1058_RS20945 0.74 -0.6
145,407 - HMPREF1058_RS20945 0.75 +1.0

Or see this region's nucleotide sequence