Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS21500 and HMPREF1058_RS05360 are separated by 32 nucleotides HMPREF1058_RS05360 and HMPREF1058_RS05355 are separated by 11 nucleotides HMPREF1058_RS05355 and HMPREF1058_RS05350 are separated by 188 nucleotides HMPREF1058_RS05350 and HMPREF1058_RS05345 are separated by 336 nucleotides
HMPREF1058_RS21500: HMPREF1058_RS21500 - hypothetical protein, at 182,567 to 182,740
_RS21500
HMPREF1058_RS05360: HMPREF1058_RS05360 - helix-turn-helix domain-containing protein, at 182,773 to 183,099
_RS05360
HMPREF1058_RS05355: HMPREF1058_RS05355 - helix-turn-helix domain-containing protein, at 183,111 to 183,431
_RS05355
HMPREF1058_RS05350: HMPREF1058_RS05350 - Fic family protein, at 183,620 to 184,642
_RS05350
HMPREF1058_RS05345: HMPREF1058_RS05345 - site-specific integrase, at 184,979 to 186,196
_RS05345
Position (kb) 183
184
185 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 182.780 kb on + strand at 182.781 kb on - strand at 182.997 kb on - strand, within HMPREF1058_RS05360 at 183.054 kb on + strand, within HMPREF1058_RS05360 at 183.086 kb on + strand at 183.087 kb on - strand at 183.098 kb on - strand at 183.111 kb on - strand at 183.215 kb on - strand, within HMPREF1058_RS05355 at 183.252 kb on + strand, within HMPREF1058_RS05355 at 183.255 kb on + strand, within HMPREF1058_RS05355 at 183.255 kb on + strand, within HMPREF1058_RS05355 at 183.256 kb on - strand, within HMPREF1058_RS05355 at 183.347 kb on - strand, within HMPREF1058_RS05355 at 183.387 kb on - strand, within HMPREF1058_RS05355 at 183.387 kb on - strand, within HMPREF1058_RS05355 at 183.402 kb on + strand at 183.403 kb on - strand at 183.441 kb on + strand at 183.477 kb on - strand at 183.577 kb on - strand at 183.646 kb on - strand at 183.699 kb on - strand at 183.724 kb on + strand, within HMPREF1058_RS05350 at 183.945 kb on - strand, within HMPREF1058_RS05350 at 184.028 kb on + strand, within HMPREF1058_RS05350 at 184.028 kb on + strand, within HMPREF1058_RS05350 at 184.168 kb on - strand, within HMPREF1058_RS05350 at 184.278 kb on - strand, within HMPREF1058_RS05350 at 184.279 kb on + strand, within HMPREF1058_RS05350 at 184.345 kb on + strand, within HMPREF1058_RS05350 at 184.346 kb on - strand, within HMPREF1058_RS05350 at 184.402 kb on + strand, within HMPREF1058_RS05350 at 184.410 kb on + strand, within HMPREF1058_RS05350 at 184.410 kb on + strand, within HMPREF1058_RS05350 at 184.706 kb on + strand at 184.706 kb on + strand at 184.708 kb on + strand at 185.136 kb on - strand, within HMPREF1058_RS05345 at 185.544 kb on + strand, within HMPREF1058_RS05345 at 185.545 kb on - strand, within HMPREF1058_RS05345 at 185.545 kb on - strand, within HMPREF1058_RS05345 at 185.545 kb on - strand, within HMPREF1058_RS05345 at 185.628 kb on + strand, within HMPREF1058_RS05345 at 185.629 kb on - strand, within HMPREF1058_RS05345
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 182,780 + -2.0 182,781 - -0.6 182,997 - HMPREF1058_RS05360 0.69 -1.2 183,054 + HMPREF1058_RS05360 0.86 -1.5 183,086 + +0.3 183,087 - +0.3 183,098 - +0.5 183,111 - -2.6 183,215 - HMPREF1058_RS05355 0.32 +2.1 183,252 + HMPREF1058_RS05355 0.44 -1.7 183,255 + HMPREF1058_RS05355 0.45 -1.2 183,255 + HMPREF1058_RS05355 0.45 -0.7 183,256 - HMPREF1058_RS05355 0.45 +0.2 183,347 - HMPREF1058_RS05355 0.74 +0.5 183,387 - HMPREF1058_RS05355 0.86 +0.5 183,387 - HMPREF1058_RS05355 0.86 +2.8 183,402 + -0.3 183,403 - +1.5 183,441 + -0.1 183,477 - -3.1 183,577 - -0.2 183,646 - -0.6 183,699 - +1.4 183,724 + HMPREF1058_RS05350 0.10 +1.0 183,945 - HMPREF1058_RS05350 0.32 -1.1 184,028 + HMPREF1058_RS05350 0.40 +0.3 184,028 + HMPREF1058_RS05350 0.40 +0.9 184,168 - HMPREF1058_RS05350 0.54 +0.7 184,278 - HMPREF1058_RS05350 0.64 +0.8 184,279 + HMPREF1058_RS05350 0.64 +2.0 184,345 + HMPREF1058_RS05350 0.71 +0.4 184,346 - HMPREF1058_RS05350 0.71 -1.3 184,402 + HMPREF1058_RS05350 0.76 -0.5 184,410 + HMPREF1058_RS05350 0.77 +2.0 184,410 + HMPREF1058_RS05350 0.77 +0.9 184,706 + +1.3 184,706 + -0.7 184,708 + -1.8 185,136 - HMPREF1058_RS05345 0.13 +0.7 185,544 + HMPREF1058_RS05345 0.46 -0.3 185,545 - HMPREF1058_RS05345 0.46 -0.6 185,545 - HMPREF1058_RS05345 0.46 +0.2 185,545 - HMPREF1058_RS05345 0.46 -0.5 185,628 + HMPREF1058_RS05345 0.53 +0.3 185,629 - HMPREF1058_RS05345 0.53 +1.0
Or see this region's nucleotide sequence