Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05265 and HMPREF1058_RS05260 are separated by 118 nucleotides HMPREF1058_RS05260 and HMPREF1058_RS05255 are separated by 15 nucleotides HMPREF1058_RS05255 and HMPREF1058_RS05250 are separated by 234 nucleotides HMPREF1058_RS05250 and HMPREF1058_RS05245 are separated by 472 nucleotides
HMPREF1058_RS05265: HMPREF1058_RS05265 - IS21 family transposase, at 206,372 to 207,937
_RS05265
HMPREF1058_RS05260: HMPREF1058_RS05260 - hypothetical protein, at 208,056 to 208,277
_RS05260
HMPREF1058_RS05255: HMPREF1058_RS05255 - hypothetical protein, at 208,293 to 208,568
_RS05255
HMPREF1058_RS05250: HMPREF1058_RS05250 - transposase, at 208,803 to 209,411
_RS05250
HMPREF1058_RS05245: HMPREF1058_RS05245 - IS1182 family transposase, at 209,884 to 210,482
_RS05245
Position (kb) 208
209
210 Strain fitness (log2 ratio) -1
0
1
2 at 208.157 kb on + strand, within HMPREF1058_RS05260 at 208.278 kb on - strand at 208.317 kb on + strand at 208.339 kb on + strand, within HMPREF1058_RS05255 at 208.355 kb on + strand, within HMPREF1058_RS05255 at 208.356 kb on - strand, within HMPREF1058_RS05255 at 208.379 kb on + strand, within HMPREF1058_RS05255 at 208.380 kb on - strand, within HMPREF1058_RS05255 at 208.381 kb on + strand, within HMPREF1058_RS05255 at 208.381 kb on + strand, within HMPREF1058_RS05255 at 208.381 kb on + strand, within HMPREF1058_RS05255 at 208.408 kb on + strand, within HMPREF1058_RS05255 at 208.410 kb on + strand, within HMPREF1058_RS05255 at 208.410 kb on + strand, within HMPREF1058_RS05255 at 208.469 kb on + strand, within HMPREF1058_RS05255 at 208.489 kb on - strand, within HMPREF1058_RS05255 at 208.494 kb on - strand, within HMPREF1058_RS05255 at 208.523 kb on - strand, within HMPREF1058_RS05255 at 208.557 kb on - strand at 208.612 kb on - strand at 208.631 kb on - strand at 208.666 kb on + strand at 208.679 kb on + strand at 208.680 kb on - strand at 208.703 kb on + strand at 208.709 kb on - strand at 208.781 kb on + strand at 208.837 kb on - strand at 209.324 kb on - strand, within HMPREF1058_RS05250 at 210.112 kb on - strand, within HMPREF1058_RS05245
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 208,157 + HMPREF1058_RS05260 0.45 +0.8 208,278 - +1.6 208,317 + -0.4 208,339 + HMPREF1058_RS05255 0.17 +0.1 208,355 + HMPREF1058_RS05255 0.22 -0.3 208,356 - HMPREF1058_RS05255 0.23 -0.3 208,379 + HMPREF1058_RS05255 0.31 +1.9 208,380 - HMPREF1058_RS05255 0.32 +0.1 208,381 + HMPREF1058_RS05255 0.32 -0.7 208,381 + HMPREF1058_RS05255 0.32 -0.3 208,381 + HMPREF1058_RS05255 0.32 +1.8 208,408 + HMPREF1058_RS05255 0.42 -0.4 208,410 + HMPREF1058_RS05255 0.42 +2.1 208,410 + HMPREF1058_RS05255 0.42 +1.8 208,469 + HMPREF1058_RS05255 0.64 +1.3 208,489 - HMPREF1058_RS05255 0.71 +1.2 208,494 - HMPREF1058_RS05255 0.73 +0.2 208,523 - HMPREF1058_RS05255 0.83 +1.1 208,557 - +0.4 208,612 - +1.0 208,631 - +0.2 208,666 + -0.2 208,679 + -0.4 208,680 - +0.5 208,703 + +0.1 208,709 - +0.5 208,781 + -0.9 208,837 - -0.2 209,324 - HMPREF1058_RS05250 0.86 +0.8 210,112 - HMPREF1058_RS05245 0.38 +1.4
Or see this region's nucleotide sequence