Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05220 and HMPREF1058_RS05215 are separated by 393 nucleotides HMPREF1058_RS05215 and HMPREF1058_RS05210 are separated by 16 nucleotides HMPREF1058_RS05210 and HMPREF1058_RS05205 are separated by 42 nucleotides
HMPREF1058_RS05220: HMPREF1058_RS05220 - Hsp20/alpha crystallin family protein, at 214,102 to 214,539
_RS05220
HMPREF1058_RS05215: HMPREF1058_RS05215 - GtrA family protein, at 214,933 to 215,322
_RS05215
HMPREF1058_RS05210: HMPREF1058_RS05210 - SDR family oxidoreductase, at 215,339 to 216,214
_RS05210
HMPREF1058_RS05205: HMPREF1058_RS05205 - GNAT family N-acetyltransferase, at 216,257 to 217,198
_RS05205
Position (kb) 215
216
217 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 214.367 kb on - strand, within HMPREF1058_RS05220 at 214.558 kb on + strand at 214.576 kb on - strand at 214.580 kb on + strand at 214.580 kb on + strand at 214.587 kb on - strand at 214.612 kb on - strand at 214.613 kb on + strand at 214.613 kb on + strand at 214.629 kb on - strand at 214.629 kb on - strand at 214.739 kb on - strand at 214.786 kb on + strand at 214.857 kb on + strand at 214.857 kb on + strand at 214.858 kb on - strand at 214.858 kb on - strand at 214.946 kb on + strand at 214.970 kb on + strand at 214.970 kb on + strand at 214.979 kb on + strand, within HMPREF1058_RS05215 at 214.984 kb on + strand, within HMPREF1058_RS05215 at 214.989 kb on + strand, within HMPREF1058_RS05215 at 215.023 kb on + strand, within HMPREF1058_RS05215 at 215.044 kb on + strand, within HMPREF1058_RS05215 at 215.046 kb on + strand, within HMPREF1058_RS05215 at 215.047 kb on - strand, within HMPREF1058_RS05215 at 215.048 kb on + strand, within HMPREF1058_RS05215 at 215.049 kb on - strand, within HMPREF1058_RS05215 at 215.049 kb on - strand, within HMPREF1058_RS05215 at 215.059 kb on - strand, within HMPREF1058_RS05215 at 215.068 kb on + strand, within HMPREF1058_RS05215 at 215.156 kb on + strand, within HMPREF1058_RS05215 at 215.157 kb on - strand, within HMPREF1058_RS05215 at 215.157 kb on - strand, within HMPREF1058_RS05215 at 215.169 kb on + strand, within HMPREF1058_RS05215 at 215.195 kb on + strand, within HMPREF1058_RS05215 at 215.195 kb on + strand, within HMPREF1058_RS05215 at 215.222 kb on + strand, within HMPREF1058_RS05215 at 215.222 kb on + strand, within HMPREF1058_RS05215 at 215.259 kb on + strand, within HMPREF1058_RS05215 at 215.268 kb on - strand, within HMPREF1058_RS05215 at 215.305 kb on - strand at 215.352 kb on - strand at 215.375 kb on + strand at 215.559 kb on - strand, within HMPREF1058_RS05210 at 215.598 kb on + strand, within HMPREF1058_RS05210 at 215.832 kb on + strand, within HMPREF1058_RS05210 at 215.876 kb on - strand, within HMPREF1058_RS05210 at 215.951 kb on + strand, within HMPREF1058_RS05210 at 216.235 kb on + strand at 216.249 kb on - strand at 216.264 kb on + strand at 216.315 kb on - strand at 216.350 kb on + strand at 216.356 kb on - strand, within HMPREF1058_RS05205 at 216.356 kb on - strand, within HMPREF1058_RS05205 at 216.380 kb on + strand, within HMPREF1058_RS05205 at 216.406 kb on + strand, within HMPREF1058_RS05205 at 216.407 kb on - strand, within HMPREF1058_RS05205 at 216.407 kb on - strand, within HMPREF1058_RS05205 at 216.407 kb on - strand, within HMPREF1058_RS05205 at 216.412 kb on - strand, within HMPREF1058_RS05205 at 216.480 kb on + strand, within HMPREF1058_RS05205 at 216.532 kb on - strand, within HMPREF1058_RS05205 at 216.556 kb on - strand, within HMPREF1058_RS05205 at 216.584 kb on + strand, within HMPREF1058_RS05205 at 216.584 kb on + strand, within HMPREF1058_RS05205 at 216.585 kb on - strand, within HMPREF1058_RS05205 at 216.676 kb on - strand, within HMPREF1058_RS05205 at 216.760 kb on - strand, within HMPREF1058_RS05205 at 216.826 kb on - strand, within HMPREF1058_RS05205 at 216.830 kb on - strand, within HMPREF1058_RS05205 at 216.859 kb on + strand, within HMPREF1058_RS05205 at 216.860 kb on - strand, within HMPREF1058_RS05205 at 216.889 kb on + strand, within HMPREF1058_RS05205 at 216.890 kb on - strand, within HMPREF1058_RS05205 at 216.892 kb on - strand, within HMPREF1058_RS05205 at 216.892 kb on - strand, within HMPREF1058_RS05205 at 216.940 kb on - strand, within HMPREF1058_RS05205 at 216.979 kb on + strand, within HMPREF1058_RS05205 at 216.980 kb on - strand, within HMPREF1058_RS05205 at 216.980 kb on - strand, within HMPREF1058_RS05205 at 216.980 kb on - strand, within HMPREF1058_RS05205 at 217.026 kb on + strand, within HMPREF1058_RS05205 at 217.191 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 214,367 - HMPREF1058_RS05220 0.61 -0.9 214,558 + +0.9 214,576 - -1.6 214,580 + -0.7 214,580 + -0.3 214,587 - -0.9 214,612 - +1.2 214,613 + +1.4 214,613 + +0.5 214,629 - +0.6 214,629 - -0.6 214,739 - -0.9 214,786 + -0.9 214,857 + -1.3 214,857 + +0.5 214,858 - +0.3 214,858 - -1.2 214,946 + +0.2 214,970 + -0.8 214,970 + +0.6 214,979 + HMPREF1058_RS05215 0.12 -0.6 214,984 + HMPREF1058_RS05215 0.13 -1.7 214,989 + HMPREF1058_RS05215 0.14 +1.8 215,023 + HMPREF1058_RS05215 0.23 +0.3 215,044 + HMPREF1058_RS05215 0.28 +0.3 215,046 + HMPREF1058_RS05215 0.29 -0.5 215,047 - HMPREF1058_RS05215 0.29 -1.3 215,048 + HMPREF1058_RS05215 0.29 +0.2 215,049 - HMPREF1058_RS05215 0.30 -0.8 215,049 - HMPREF1058_RS05215 0.30 +1.3 215,059 - HMPREF1058_RS05215 0.32 +0.5 215,068 + HMPREF1058_RS05215 0.35 +0.5 215,156 + HMPREF1058_RS05215 0.57 -0.1 215,157 - HMPREF1058_RS05215 0.57 -1.0 215,157 - HMPREF1058_RS05215 0.57 +2.8 215,169 + HMPREF1058_RS05215 0.61 -2.2 215,195 + HMPREF1058_RS05215 0.67 -1.2 215,195 + HMPREF1058_RS05215 0.67 +0.0 215,222 + HMPREF1058_RS05215 0.74 -1.3 215,222 + HMPREF1058_RS05215 0.74 -1.4 215,259 + HMPREF1058_RS05215 0.84 -1.8 215,268 - HMPREF1058_RS05215 0.86 +0.8 215,305 - +0.0 215,352 - -1.1 215,375 + -1.5 215,559 - HMPREF1058_RS05210 0.25 -0.9 215,598 + HMPREF1058_RS05210 0.30 +0.5 215,832 + HMPREF1058_RS05210 0.56 +2.7 215,876 - HMPREF1058_RS05210 0.61 -0.6 215,951 + HMPREF1058_RS05210 0.70 +0.0 216,235 + -1.2 216,249 - -0.7 216,264 + +0.9 216,315 - +0.3 216,350 + +0.4 216,356 - HMPREF1058_RS05205 0.11 +0.4 216,356 - HMPREF1058_RS05205 0.11 -0.5 216,380 + HMPREF1058_RS05205 0.13 +0.3 216,406 + HMPREF1058_RS05205 0.16 +0.9 216,407 - HMPREF1058_RS05205 0.16 -0.9 216,407 - HMPREF1058_RS05205 0.16 -0.2 216,407 - HMPREF1058_RS05205 0.16 +0.3 216,412 - HMPREF1058_RS05205 0.16 -0.0 216,480 + HMPREF1058_RS05205 0.24 +0.4 216,532 - HMPREF1058_RS05205 0.29 +0.3 216,556 - HMPREF1058_RS05205 0.32 -0.3 216,584 + HMPREF1058_RS05205 0.35 +0.1 216,584 + HMPREF1058_RS05205 0.35 -1.3 216,585 - HMPREF1058_RS05205 0.35 +1.5 216,676 - HMPREF1058_RS05205 0.44 +0.8 216,760 - HMPREF1058_RS05205 0.53 +1.7 216,826 - HMPREF1058_RS05205 0.60 -1.4 216,830 - HMPREF1058_RS05205 0.61 -0.2 216,859 + HMPREF1058_RS05205 0.64 -1.4 216,860 - HMPREF1058_RS05205 0.64 -0.6 216,889 + HMPREF1058_RS05205 0.67 +1.8 216,890 - HMPREF1058_RS05205 0.67 +0.5 216,892 - HMPREF1058_RS05205 0.67 +0.2 216,892 - HMPREF1058_RS05205 0.67 +2.0 216,940 - HMPREF1058_RS05205 0.73 -0.6 216,979 + HMPREF1058_RS05205 0.77 +1.0 216,980 - HMPREF1058_RS05205 0.77 -0.3 216,980 - HMPREF1058_RS05205 0.77 -0.7 216,980 - HMPREF1058_RS05205 0.77 +1.2 217,026 + HMPREF1058_RS05205 0.82 +0.2 217,191 + +1.0
Or see this region's nucleotide sequence