Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04730

Experiment: Galactan from Potato 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato 2.5 mg/ml (C)
325,473	+		HMPREF1058_RS04740	0.32	+0.9
325,473	+		HMPREF1058_RS04740	0.32	-0.3
325,498	-		HMPREF1058_RS04740	0.37	-0.6
325,498	-		HMPREF1058_RS04740	0.37	+1.0
325,529	-		HMPREF1058_RS04740	0.44	+1.5
325,530	+		HMPREF1058_RS04740	0.44	-1.1
325,614	+		HMPREF1058_RS04740	0.63	-1.5
325,614	+		HMPREF1058_RS04740	0.63	-1.0
325,615	-		HMPREF1058_RS04740	0.64	+0.7
325,619	-		HMPREF1058_RS04740	0.65	+1.8
325,619	-		HMPREF1058_RS04740	0.65	+0.8
325,732	-				-0.3
325,732	-				-0.8
325,733	+				-0.3
325,774	+				-0.2
325,777	+				-0.5
325,787	+				-0.6
325,788	-				+0.9
325,875	-				-0.1
325,875	-				+1.5
326,727	-		HMPREF1058_RS04730	0.29	+1.1
326,779	-		HMPREF1058_RS04730	0.34	+0.6
326,844	-		HMPREF1058_RS04730	0.41	-0.1
326,885	-		HMPREF1058_RS04730	0.45	+1.4
326,925	-		HMPREF1058_RS04730	0.49	+0.6
326,925	-		HMPREF1058_RS04730	0.49	-0.7
326,930	-		HMPREF1058_RS04730	0.49	+0.8
327,116	-		HMPREF1058_RS04730	0.68	+0.3
327,164	-		HMPREF1058_RS04730	0.72	-0.8
327,287	-		HMPREF1058_RS04730	0.85	+1.2
327,413	-				+1.3
327,416	-				+1.1
327,416	-				+0.4
327,416	-				-0.8
327,420	-				-2.2
327,424	-				+0.3
327,788	-				-0.3
327,793	-				+2.8
327,793	-				-2.4
327,795	-				+0.9