Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04650 and HMPREF1058_RS04645 are separated by 77 nucleotides HMPREF1058_RS04645 and HMPREF1058_RS04640 are separated by 422 nucleotides HMPREF1058_RS04640 and HMPREF1058_RS04635 are separated by 78 nucleotides
HMPREF1058_RS04650: HMPREF1058_RS04650 - 9-O-acetylesterase, at 344,344 to 346,260
_RS04650
HMPREF1058_RS04645: HMPREF1058_RS04645 - type II pantothenate kinase, at 346,338 to 347,162
_RS04645
HMPREF1058_RS04640: HMPREF1058_RS04640 - 5S ribosomal RNA, at 347,585 to 347,695
_RS04640
HMPREF1058_RS04635: HMPREF1058_RS04635 - 23S ribosomal RNA, at 347,774 to 350,661
_RS04635
Position (kb) 346
347
348 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 345.390 kb on - strand, within HMPREF1058_RS04650 at 345.403 kb on + strand, within HMPREF1058_RS04650 at 345.422 kb on + strand, within HMPREF1058_RS04650 at 345.422 kb on + strand, within HMPREF1058_RS04650 at 345.424 kb on + strand, within HMPREF1058_RS04650 at 345.424 kb on + strand, within HMPREF1058_RS04650 at 345.425 kb on - strand, within HMPREF1058_RS04650 at 345.559 kb on - strand, within HMPREF1058_RS04650 at 345.590 kb on + strand, within HMPREF1058_RS04650 at 345.591 kb on - strand, within HMPREF1058_RS04650 at 345.591 kb on - strand, within HMPREF1058_RS04650 at 345.624 kb on + strand, within HMPREF1058_RS04650 at 345.624 kb on + strand, within HMPREF1058_RS04650 at 345.624 kb on + strand, within HMPREF1058_RS04650 at 345.625 kb on - strand, within HMPREF1058_RS04650 at 345.625 kb on - strand, within HMPREF1058_RS04650 at 345.626 kb on + strand, within HMPREF1058_RS04650 at 345.626 kb on + strand, within HMPREF1058_RS04650 at 345.626 kb on + strand, within HMPREF1058_RS04650 at 345.627 kb on - strand, within HMPREF1058_RS04650 at 345.631 kb on + strand at 345.646 kb on - strand, within HMPREF1058_RS04650 at 345.678 kb on - strand, within HMPREF1058_RS04650 at 345.722 kb on + strand, within HMPREF1058_RS04650 at 345.827 kb on + strand, within HMPREF1058_RS04650 at 345.929 kb on + strand, within HMPREF1058_RS04650 at 346.113 kb on - strand at 346.140 kb on - strand at 346.178 kb on - strand at 346.195 kb on - strand at 346.232 kb on + strand at 346.232 kb on + strand at 346.233 kb on - strand at 346.272 kb on + strand at 346.272 kb on + strand at 346.272 kb on + strand at 346.303 kb on + strand at 346.351 kb on + strand at 346.351 kb on + strand at 346.352 kb on - strand at 346.352 kb on - strand at 346.355 kb on + strand at 346.356 kb on - strand at 346.357 kb on + strand at 346.385 kb on - strand at 346.387 kb on + strand at 346.388 kb on - strand at 346.388 kb on - strand at 346.409 kb on - strand at 346.409 kb on - strand at 346.473 kb on + strand, within HMPREF1058_RS04645 at 346.477 kb on + strand, within HMPREF1058_RS04645 at 346.477 kb on + strand at 346.477 kb on + strand, within HMPREF1058_RS04645 at 346.478 kb on - strand, within HMPREF1058_RS04645 at 346.479 kb on + strand, within HMPREF1058_RS04645 at 346.479 kb on + strand, within HMPREF1058_RS04645 at 346.479 kb on + strand, within HMPREF1058_RS04645 at 346.480 kb on - strand, within HMPREF1058_RS04645 at 346.543 kb on - strand, within HMPREF1058_RS04645 at 346.543 kb on - strand, within HMPREF1058_RS04645 at 346.558 kb on + strand, within HMPREF1058_RS04645 at 346.559 kb on - strand, within HMPREF1058_RS04645 at 346.561 kb on - strand, within HMPREF1058_RS04645 at 346.561 kb on - strand, within HMPREF1058_RS04645 at 346.581 kb on - strand, within HMPREF1058_RS04645 at 346.617 kb on + strand, within HMPREF1058_RS04645 at 346.618 kb on - strand, within HMPREF1058_RS04645 at 346.649 kb on - strand, within HMPREF1058_RS04645 at 346.708 kb on + strand, within HMPREF1058_RS04645 at 346.708 kb on + strand, within HMPREF1058_RS04645 at 346.708 kb on + strand, within HMPREF1058_RS04645 at 346.709 kb on - strand, within HMPREF1058_RS04645 at 346.717 kb on + strand, within HMPREF1058_RS04645 at 346.717 kb on + strand, within HMPREF1058_RS04645 at 346.718 kb on - strand, within HMPREF1058_RS04645 at 346.718 kb on - strand, within HMPREF1058_RS04645 at 346.775 kb on + strand, within HMPREF1058_RS04645 at 346.775 kb on + strand, within HMPREF1058_RS04645 at 346.811 kb on - strand, within HMPREF1058_RS04645 at 346.821 kb on - strand, within HMPREF1058_RS04645 at 346.930 kb on + strand, within HMPREF1058_RS04645 at 346.930 kb on + strand, within HMPREF1058_RS04645 at 346.931 kb on - strand, within HMPREF1058_RS04645 at 346.931 kb on - strand, within HMPREF1058_RS04645 at 346.950 kb on - strand, within HMPREF1058_RS04645 at 346.950 kb on - strand, within HMPREF1058_RS04645 at 346.950 kb on - strand, within HMPREF1058_RS04645 at 346.955 kb on - strand, within HMPREF1058_RS04645 at 346.957 kb on + strand, within HMPREF1058_RS04645 at 346.957 kb on + strand, within HMPREF1058_RS04645 at 346.982 kb on - strand, within HMPREF1058_RS04645 at 347.027 kb on + strand, within HMPREF1058_RS04645 at 347.148 kb on + strand at 347.149 kb on - strand at 347.149 kb on - strand at 347.156 kb on + strand at 347.157 kb on - strand at 347.160 kb on + strand at 347.175 kb on + strand at 347.175 kb on + strand at 347.195 kb on + strand at 347.196 kb on - strand at 347.201 kb on + strand at 347.201 kb on + strand at 347.202 kb on - strand at 347.282 kb on + strand at 347.288 kb on - strand at 347.291 kb on + strand at 347.297 kb on - strand at 347.311 kb on - strand at 347.317 kb on + strand at 347.318 kb on - strand at 347.321 kb on + strand at 347.321 kb on + strand at 347.327 kb on - strand at 347.349 kb on + strand at 347.350 kb on - strand at 347.356 kb on + strand at 347.357 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 345,390 - HMPREF1058_RS04650 0.55 -0.3 345,403 + HMPREF1058_RS04650 0.55 -3.1 345,422 + HMPREF1058_RS04650 0.56 -1.8 345,422 + HMPREF1058_RS04650 0.56 -0.0 345,424 + HMPREF1058_RS04650 0.56 -0.3 345,424 + HMPREF1058_RS04650 0.56 -1.2 345,425 - HMPREF1058_RS04650 0.56 -1.4 345,559 - HMPREF1058_RS04650 0.63 -1.2 345,590 + HMPREF1058_RS04650 0.65 +0.2 345,591 - HMPREF1058_RS04650 0.65 +0.9 345,591 - HMPREF1058_RS04650 0.65 +0.8 345,624 + HMPREF1058_RS04650 0.67 -0.1 345,624 + HMPREF1058_RS04650 0.67 +0.5 345,624 + HMPREF1058_RS04650 0.67 +0.5 345,625 - HMPREF1058_RS04650 0.67 -0.5 345,625 - HMPREF1058_RS04650 0.67 -0.6 345,626 + HMPREF1058_RS04650 0.67 +0.7 345,626 + HMPREF1058_RS04650 0.67 -0.3 345,626 + HMPREF1058_RS04650 0.67 -0.6 345,627 - HMPREF1058_RS04650 0.67 -0.5 345,631 + -1.1 345,646 - HMPREF1058_RS04650 0.68 +1.8 345,678 - HMPREF1058_RS04650 0.70 -2.6 345,722 + HMPREF1058_RS04650 0.72 +0.9 345,827 + HMPREF1058_RS04650 0.77 +1.3 345,929 + HMPREF1058_RS04650 0.83 -0.9 346,113 - -0.8 346,140 - +0.9 346,178 - +0.2 346,195 - -1.8 346,232 + +0.3 346,232 + -1.8 346,233 - +0.2 346,272 + +1.6 346,272 + +0.3 346,272 + +2.3 346,303 + +0.1 346,351 + +0.2 346,351 + +0.3 346,352 - -0.9 346,352 - +1.6 346,355 + +1.3 346,356 - +1.6 346,357 + -0.1 346,385 - -0.1 346,387 + -0.5 346,388 - +0.8 346,388 - +0.7 346,409 - +0.5 346,409 - +0.6 346,473 + HMPREF1058_RS04645 0.16 -1.2 346,477 + HMPREF1058_RS04645 0.17 +0.6 346,477 + +2.3 346,477 + HMPREF1058_RS04645 0.17 +1.7 346,478 - HMPREF1058_RS04645 0.17 +0.7 346,479 + HMPREF1058_RS04645 0.17 +0.7 346,479 + HMPREF1058_RS04645 0.17 -0.5 346,479 + HMPREF1058_RS04645 0.17 +0.3 346,480 - HMPREF1058_RS04645 0.17 +1.8 346,543 - HMPREF1058_RS04645 0.25 -1.4 346,543 - HMPREF1058_RS04645 0.25 +1.3 346,558 + HMPREF1058_RS04645 0.27 -1.0 346,559 - HMPREF1058_RS04645 0.27 +1.1 346,561 - HMPREF1058_RS04645 0.27 +0.2 346,561 - HMPREF1058_RS04645 0.27 +2.8 346,581 - HMPREF1058_RS04645 0.29 +1.8 346,617 + HMPREF1058_RS04645 0.34 +1.0 346,618 - HMPREF1058_RS04645 0.34 +0.8 346,649 - HMPREF1058_RS04645 0.38 -0.3 346,708 + HMPREF1058_RS04645 0.45 -0.1 346,708 + HMPREF1058_RS04645 0.45 +0.1 346,708 + HMPREF1058_RS04645 0.45 +2.1 346,709 - HMPREF1058_RS04645 0.45 +0.7 346,717 + HMPREF1058_RS04645 0.46 +1.6 346,717 + HMPREF1058_RS04645 0.46 +0.6 346,718 - HMPREF1058_RS04645 0.46 -0.6 346,718 - HMPREF1058_RS04645 0.46 +0.1 346,775 + HMPREF1058_RS04645 0.53 +0.1 346,775 + HMPREF1058_RS04645 0.53 +2.1 346,811 - HMPREF1058_RS04645 0.57 -0.7 346,821 - HMPREF1058_RS04645 0.59 +0.8 346,930 + HMPREF1058_RS04645 0.72 -1.0 346,930 + HMPREF1058_RS04645 0.72 +0.7 346,931 - HMPREF1058_RS04645 0.72 +0.1 346,931 - HMPREF1058_RS04645 0.72 -1.0 346,950 - HMPREF1058_RS04645 0.74 +2.0 346,950 - HMPREF1058_RS04645 0.74 -0.7 346,950 - HMPREF1058_RS04645 0.74 +0.0 346,955 - HMPREF1058_RS04645 0.75 +0.4 346,957 + HMPREF1058_RS04645 0.75 +0.3 346,957 + HMPREF1058_RS04645 0.75 +1.8 346,982 - HMPREF1058_RS04645 0.78 +0.6 347,027 + HMPREF1058_RS04645 0.84 +1.6 347,148 + +0.5 347,149 - +1.5 347,149 - +2.8 347,156 + +1.1 347,157 - +0.8 347,160 + +1.2 347,175 + +0.7 347,175 + +0.4 347,195 + +0.6 347,196 - +0.0 347,201 + +0.4 347,201 + -0.3 347,202 - -0.0 347,282 + +0.3 347,288 - +0.4 347,291 + +2.8 347,297 - +0.3 347,311 - -0.3 347,317 + +0.3 347,318 - +0.5 347,321 + +0.7 347,321 + +0.7 347,327 - +1.0 347,349 + +0.9 347,350 - +0.1 347,356 + -0.2 347,357 - -0.2
Or see this region's nucleotide sequence