Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04555 and HMPREF1058_RS04550 overlap by 1 nucleotides HMPREF1058_RS04550 and HMPREF1058_RS04545 are separated by 21 nucleotides HMPREF1058_RS04545 and HMPREF1058_RS04540 overlap by 8 nucleotides HMPREF1058_RS04540 and HMPREF1058_RS04530 are separated by 286 nucleotides HMPREF1058_RS04530 and HMPREF1058_RS21520 are separated by 39 nucleotides
HMPREF1058_RS04555: HMPREF1058_RS04555 - YqaJ viral recombinase family protein, at 8,860 to 9,531
_RS04555
HMPREF1058_RS04550: HMPREF1058_RS04550 - hypothetical protein, at 9,531 to 10,295
_RS04550
HMPREF1058_RS04545: HMPREF1058_RS04545 - hypothetical protein, at 10,317 to 10,553
_RS04545
HMPREF1058_RS04540: HMPREF1058_RS04540 - hypothetical protein, at 10,546 to 10,728
_RS04540
HMPREF1058_RS04530: HMPREF1058_RS04530 - hypothetical protein, at 11,015 to 11,221
_RS04530
HMPREF1058_RS21520: HMPREF1058_RS21520 - hypothetical protein, at 11,261 to 11,434
_RS21520
Position (kb) 10
11 Strain fitness (log2 ratio) -1
0
1
2
3 at 9.511 kb on + strand at 9.513 kb on + strand at 9.532 kb on + strand at 9.557 kb on + strand at 9.557 kb on + strand at 9.685 kb on + strand, within HMPREF1058_RS04550 at 10.168 kb on + strand, within HMPREF1058_RS04550 at 10.324 kb on + strand at 10.324 kb on + strand at 10.442 kb on + strand, within HMPREF1058_RS04545 at 10.729 kb on + strand at 10.729 kb on + strand at 10.847 kb on + strand at 10.847 kb on + strand at 11.039 kb on + strand, within HMPREF1058_RS04530 at 11.058 kb on + strand, within HMPREF1058_RS04530 at 11.102 kb on + strand, within HMPREF1058_RS04530 at 11.235 kb on + strand at 11.244 kb on + strand at 11.296 kb on + strand, within HMPREF1058_RS21520 at 11.508 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 9,511 + +3.0 9,513 + -0.4 9,532 + -1.0 9,557 + +1.7 9,557 + -1.3 9,685 + HMPREF1058_RS04550 0.20 +0.1 10,168 + HMPREF1058_RS04550 0.83 +0.2 10,324 + -1.5 10,324 + +0.0 10,442 + HMPREF1058_RS04545 0.53 +0.6 10,729 + -1.1 10,729 + -1.6 10,847 + -1.0 10,847 + -1.7 11,039 + HMPREF1058_RS04530 0.12 +0.9 11,058 + HMPREF1058_RS04530 0.21 -0.2 11,102 + HMPREF1058_RS04530 0.42 +2.4 11,235 + +1.6 11,244 + -1.4 11,296 + HMPREF1058_RS21520 0.20 +2.1 11,508 + -1.5
Or see this region's nucleotide sequence