Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04160

Experiment: Galactan from Potato 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato 2.5 mg/ml (C)
104,714	+		HMPREF1058_RS04165	0.12	+0.4
104,717	-		HMPREF1058_RS04165	0.13	+1.0
104,725	-		HMPREF1058_RS04165	0.14	-2.0
104,771	-		HMPREF1058_RS04165	0.21	+0.6
104,858	-		HMPREF1058_RS04165	0.35	-1.1
104,956	-		HMPREF1058_RS04165	0.51	-2.3
104,956	-		HMPREF1058_RS04165	0.51	+0.1
105,045	+		HMPREF1058_RS04165	0.65	-0.6
105,118	+		HMPREF1058_RS04165	0.77	+0.4
105,118	+		HMPREF1058_RS04165	0.77	-0.2
105,118	+		HMPREF1058_RS04165	0.77	+0.3
105,119	-		HMPREF1058_RS04165	0.77	-0.9
105,119	-		HMPREF1058_RS04165	0.77	-1.7
105,119	-		HMPREF1058_RS04165	0.77	-1.1
105,119	-		HMPREF1058_RS04165	0.77	+1.4
105,121	-		HMPREF1058_RS04165	0.77	-0.7
105,121	-		HMPREF1058_RS04165	0.77	+2.3
105,208	+				-1.3
105,209	-				-0.8
105,209	-				+1.2
105,238	+				+0.9
105,348	+				-0.0
105,406	+				+1.4
105,435	-				-0.2
105,502	+				+0.3
105,612	+				+0.9
105,655	+				-0.9
105,683	-				+0.1
105,684	+				-0.7
105,699	+				-0.4
105,740	+				-0.3
105,740	+				-1.9
106,267	-		HMPREF1058_RS04160	0.46	+1.4
106,404	+		HMPREF1058_RS04160	0.56	+1.4
106,632	-		HMPREF1058_RS04160	0.73	-1.4
106,694	+		HMPREF1058_RS04160	0.78	-1.2
106,868	+				-1.1
106,869	-				-0.9
106,883	+				+0.1
106,953	+				+0.5
106,991	+				+0.6
106,993	+				-1.3
106,994	-				-0.6
107,088	+				-1.7
107,099	-				+1.3
107,242	+				-0.6
107,242	+				+0.4
107,268	+				-0.6
107,269	-				-2.0
107,283	-				-0.6
107,287	+				-0.2
107,288	-				-0.3
107,293	-				+1.4
107,293	-				-1.8
107,410	-				-0.6
107,414	+				-2.8
107,544	-		HMPREF1058_RS04155	0.20	+0.6
107,616	+		HMPREF1058_RS04155	0.26	-2.3
107,617	-		HMPREF1058_RS04155	0.26	+1.2
107,617	-		HMPREF1058_RS04155	0.26	+0.6
107,617	-		HMPREF1058_RS04155	0.26	-1.8
107,668	-		HMPREF1058_RS04155	0.31	-1.5
107,741	+		HMPREF1058_RS04155	0.37	-1.0
107,976	+		HMPREF1058_RS04155	0.56	+0.4