Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04010

Experiment: Galactan from Potato 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato 2.5 mg/ml (C)
137,237	-		HMPREF1058_RS04015	0.70	+0.4
137,283	+		HMPREF1058_RS04015	0.72	+1.3
137,284	-		HMPREF1058_RS04015	0.72	+0.2
137,284	-		HMPREF1058_RS04015	0.72	+0.8
137,482	-		HMPREF1058_RS04015	0.80	-0.6
137,482	-		HMPREF1058_RS04015	0.80	-1.6
137,513	-		HMPREF1058_RS04015	0.81	-0.6
137,528	+		HMPREF1058_RS04015	0.82	-1.1
137,528	+		HMPREF1058_RS04015	0.82	+0.8
137,528	+		HMPREF1058_RS04015	0.82	-0.2
137,680	+		HMPREF1058_RS04015	0.88	+4.0
137,684	-		HMPREF1058_RS04015	0.88	-1.5
137,739	-				+1.0
137,739	-				-1.3
137,748	+				-0.9
137,748	+				-2.1
137,749	-				-0.6
137,943	+				-1.3
137,943	+				-0.6
137,944	-				+0.1
138,039	-				+0.2
138,039	-				+0.8
138,088	-				+1.1
138,090	-				+0.8
138,091	+				-0.7
138,091	+				-2.3
138,091	+				-0.1
138,092	-				-1.8
138,092	-				+2.7
138,094	-				+0.7
138,094	-				-2.1
138,094	-				-0.6
138,099	-				+0.4
138,101	+				+0.8
138,101	+				-1.3
138,101	+				-1.8
138,102	-				+2.5
138,114	+				+1.4
138,118	+				-1.2
138,224	-				+0.8
138,266	-				+0.8
138,266	-				+1.3
138,266	-				+1.4
138,315	+				+0.8
138,315	+				+0.5
138,326	-				-0.8
138,380	+		HMPREF1058_RS04010	0.13	+0.6
138,381	-		HMPREF1058_RS04010	0.13	-0.0
138,383	-		HMPREF1058_RS04010	0.13	-0.4
138,629	-		HMPREF1058_RS04010	0.25	-1.1
138,629	-		HMPREF1058_RS04010	0.25	-0.5
138,630	+		HMPREF1058_RS04010	0.25	+0.9
138,631	-		HMPREF1058_RS04010	0.25	-0.1
138,631	-		HMPREF1058_RS04010	0.25	+1.0
138,707	-		HMPREF1058_RS04010	0.29	-1.9
138,777	+		HMPREF1058_RS04010	0.32	-0.1
138,778	-		HMPREF1058_RS04010	0.32	+1.2
138,858	+		HMPREF1058_RS04010	0.36	+1.0
138,929	-		HMPREF1058_RS04010	0.39	-0.7
138,929	-		HMPREF1058_RS04010	0.39	-1.2
139,053	+		HMPREF1058_RS04010	0.46	-1.8
139,053	+		HMPREF1058_RS04010	0.46	+2.0
139,145	-		HMPREF1058_RS04010	0.50	-1.9
139,241	+		HMPREF1058_RS04010	0.55	+1.1
139,316	+		HMPREF1058_RS04010	0.58	+1.2
139,316	+		HMPREF1058_RS04010	0.58	+1.9
139,385	+		HMPREF1058_RS04010	0.62	-0.6
139,386	-		HMPREF1058_RS04010	0.62	+1.4
139,391	+		HMPREF1058_RS04010	0.62	+0.9
139,416	-		HMPREF1058_RS04010	0.63	+1.0
139,421	+		HMPREF1058_RS04010	0.63	+0.1
139,421	+		HMPREF1058_RS04010	0.63	+2.4
139,448	+		HMPREF1058_RS04010	0.65	+0.9
139,455	+		HMPREF1058_RS04010	0.65	+1.2
139,456	-		HMPREF1058_RS04010	0.65	+0.2
139,482	+		HMPREF1058_RS04010	0.66	+1.3
139,482	+		HMPREF1058_RS04010	0.66	+0.4
139,483	-				+0.2
139,491	+		HMPREF1058_RS04010	0.67	-0.1
139,491	+		HMPREF1058_RS04010	0.67	+3.6
139,495	+		HMPREF1058_RS04010	0.67	+0.7
139,495	+		HMPREF1058_RS04010	0.67	+0.6
139,496	-		HMPREF1058_RS04010	0.67	-0.0
139,548	+		HMPREF1058_RS04010	0.70	+1.2
139,549	-		HMPREF1058_RS04010	0.70	+0.3
139,617	+		HMPREF1058_RS04010	0.73	+0.4
139,618	-		HMPREF1058_RS04010	0.73	+1.2
139,706	-		HMPREF1058_RS04010	0.77	+1.4
139,728	-		HMPREF1058_RS04010	0.78	+2.0
139,729	+		HMPREF1058_RS04010	0.79	-0.1
139,730	-		HMPREF1058_RS04010	0.79	-0.2
139,768	+				-0.6
139,769	-		HMPREF1058_RS04010	0.80	-0.3
139,886	-		HMPREF1058_RS04010	0.86	-0.6
139,913	-		HMPREF1058_RS04010	0.88	-1.4
139,948	+		HMPREF1058_RS04010	0.89	+0.3
140,043	+				-1.1
140,044	-				-1.0
140,280	-				-1.7
140,310	+				-2.2
140,310	+				+0.5
140,310	+				-0.5
140,311	-				-2.3
140,311	-				-2.3
140,337	+				+1.6
140,448	+				-0.6
140,455	+				-0.9
140,561	+		HMPREF1058_RS04005	0.11	-0.4
140,562	-		HMPREF1058_RS04005	0.11	+0.1
140,585	+		HMPREF1058_RS04005	0.12	+4.3
140,586	-				+0.4
140,591	+		HMPREF1058_RS04005	0.13	-1.7
140,591	+		HMPREF1058_RS04005	0.13	+0.2
140,698	-		HMPREF1058_RS04005	0.17	-0.8
140,716	+		HMPREF1058_RS04005	0.18	-1.9
140,780	+		HMPREF1058_RS04005	0.21	-1.8
140,780	+		HMPREF1058_RS04005	0.21	-0.7
140,781	-		HMPREF1058_RS04005	0.21	-1.8
140,781	-		HMPREF1058_RS04005	0.21	+3.2
140,799	+		HMPREF1058_RS04005	0.22	-0.8
140,863	-		HMPREF1058_RS04005	0.25	-0.1
140,961	+		HMPREF1058_RS04005	0.29	-0.7
140,962	-		HMPREF1058_RS04005	0.29	-0.3
140,993	-		HMPREF1058_RS04005	0.30	-0.7
140,994	+		HMPREF1058_RS04005	0.30	+0.2
140,994	+		HMPREF1058_RS04005	0.30	+1.2
140,994	+		HMPREF1058_RS04005	0.30	-0.1
141,067	+		HMPREF1058_RS04005	0.33	+0.8