Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03715

Experiment: Galactan from Potato 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS03720 and HMPREF1058_RS03715 are separated by 44 nucleotidesHMPREF1058_RS03715 and HMPREF1058_RS03710 are separated by 216 nucleotides HMPREF1058_RS03720: HMPREF1058_RS03720 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 206,394 to 207,815 _RS03720 HMPREF1058_RS03715: HMPREF1058_RS03715 - RluA family pseudouridine synthase, at 207,860 to 208,786 _RS03715 HMPREF1058_RS03710: HMPREF1058_RS03710 - hypothetical protein, at 209,003 to 209,683 _RS03710 Position (kb) 207 208 209Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 206.918 kb on - strand, within HMPREF1058_RS03720at 206.943 kb on - strand, within HMPREF1058_RS03720at 207.071 kb on + strand, within HMPREF1058_RS03720at 207.071 kb on + strand, within HMPREF1058_RS03720at 207.071 kb on + strand, within HMPREF1058_RS03720at 207.072 kb on - strand, within HMPREF1058_RS03720at 207.172 kb on + strand, within HMPREF1058_RS03720at 207.172 kb on + strand, within HMPREF1058_RS03720at 207.176 kb on - strand, within HMPREF1058_RS03720at 207.176 kb on - strand, within HMPREF1058_RS03720at 207.177 kb on + strand, within HMPREF1058_RS03720at 207.181 kb on + strand, within HMPREF1058_RS03720at 207.248 kb on + strand, within HMPREF1058_RS03720at 207.283 kb on + strand, within HMPREF1058_RS03720at 207.327 kb on - strand, within HMPREF1058_RS03720at 207.336 kb on - strand, within HMPREF1058_RS03720at 207.456 kb on + strand, within HMPREF1058_RS03720at 207.457 kb on - strand, within HMPREF1058_RS03720at 207.472 kb on + strand, within HMPREF1058_RS03720at 207.483 kb on - strand, within HMPREF1058_RS03720at 207.501 kb on - strand, within HMPREF1058_RS03720at 207.515 kb on + strand, within HMPREF1058_RS03720at 207.526 kb on - strand, within HMPREF1058_RS03720at 207.591 kb on - strand, within HMPREF1058_RS03720at 207.591 kb on - strand, within HMPREF1058_RS03720at 207.635 kb on + strand, within HMPREF1058_RS03720at 207.638 kb on + strand, within HMPREF1058_RS03720at 207.639 kb on - strand, within HMPREF1058_RS03720at 207.639 kb on - strand, within HMPREF1058_RS03720at 207.673 kb on - strandat 207.719 kb on - strandat 207.758 kb on + strandat 207.758 kb on + strandat 207.758 kb on + strandat 207.758 kb on + strandat 207.759 kb on - strandat 207.770 kb on + strandat 207.770 kb on + strandat 207.771 kb on - strandat 207.843 kb on - strandat 207.860 kb on - strandat 207.872 kb on - strandat 207.872 kb on - strandat 207.917 kb on + strandat 207.919 kb on + strandat 207.919 kb on + strandat 207.920 kb on - strandat 207.924 kb on + strandat 207.925 kb on - strandat 207.926 kb on + strandat 207.926 kb on + strandat 207.926 kb on + strandat 207.927 kb on - strandat 207.927 kb on - strandat 207.928 kb on + strandat 207.929 kb on - strandat 208.036 kb on + strand, within HMPREF1058_RS03715at 208.036 kb on + strand, within HMPREF1058_RS03715at 208.037 kb on - strand, within HMPREF1058_RS03715at 208.057 kb on + strand, within HMPREF1058_RS03715at 208.092 kb on + strand, within HMPREF1058_RS03715at 208.158 kb on - strand, within HMPREF1058_RS03715at 208.159 kb on + strandat 208.248 kb on - strand, within HMPREF1058_RS03715at 208.248 kb on - strand, within HMPREF1058_RS03715at 208.288 kb on - strand, within HMPREF1058_RS03715at 208.352 kb on - strand, within HMPREF1058_RS03715at 208.356 kb on + strand, within HMPREF1058_RS03715at 208.440 kb on + strand, within HMPREF1058_RS03715at 208.469 kb on + strand, within HMPREF1058_RS03715at 208.470 kb on - strand, within HMPREF1058_RS03715at 208.488 kb on + strand, within HMPREF1058_RS03715at 208.488 kb on + strand, within HMPREF1058_RS03715at 208.504 kb on + strand, within HMPREF1058_RS03715at 208.523 kb on + strand, within HMPREF1058_RS03715at 208.585 kb on + strand, within HMPREF1058_RS03715at 208.607 kb on - strand, within HMPREF1058_RS03715at 208.683 kb on + strand, within HMPREF1058_RS03715at 208.699 kb on - strandat 208.706 kb on + strandat 208.707 kb on - strandat 208.808 kb on - strandat 208.811 kb on + strandat 208.846 kb on + strandat 208.885 kb on + strandat 208.885 kb on + strandat 208.909 kb on + strandat 209.056 kb on + strandat 209.090 kb on + strand, within HMPREF1058_RS03710at 209.164 kb on + strand, within HMPREF1058_RS03710at 209.184 kb on + strand, within HMPREF1058_RS03710at 209.187 kb on + strand, within HMPREF1058_RS03710at 209.188 kb on - strand, within HMPREF1058_RS03710at 209.189 kb on + strand, within HMPREF1058_RS03710at 209.191 kb on + strand, within HMPREF1058_RS03710at 209.207 kb on - strand, within HMPREF1058_RS03710at 209.209 kb on + strand, within HMPREF1058_RS03710at 209.209 kb on + strand, within HMPREF1058_RS03710at 209.211 kb on + strand, within HMPREF1058_RS03710at 209.223 kb on + strand, within HMPREF1058_RS03710at 209.224 kb on - strand, within HMPREF1058_RS03710at 209.224 kb on - strand, within HMPREF1058_RS03710at 209.237 kb on - strand, within HMPREF1058_RS03710at 209.242 kb on + strand, within HMPREF1058_RS03710at 209.265 kb on - strand, within HMPREF1058_RS03710at 209.265 kb on - strand, within HMPREF1058_RS03710at 209.287 kb on + strand, within HMPREF1058_RS03710at 209.342 kb on - strand, within HMPREF1058_RS03710at 209.416 kb on + strand, within HMPREF1058_RS03710at 209.508 kb on + strand, within HMPREF1058_RS03710at 209.575 kb on + strand, within HMPREF1058_RS03710at 209.587 kb on - strand, within HMPREF1058_RS03710at 209.615 kb on + strandat 209.616 kb on - strandat 209.744 kb on - strandat 209.763 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C)
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206,918 - HMPREF1058_RS03720 0.37 -1.7
206,943 - HMPREF1058_RS03720 0.39 -1.6
207,071 + HMPREF1058_RS03720 0.48 +0.3
207,071 + HMPREF1058_RS03720 0.48 -0.6
207,071 + HMPREF1058_RS03720 0.48 +2.5
207,072 - HMPREF1058_RS03720 0.48 -0.3
207,172 + HMPREF1058_RS03720 0.55 -0.6
207,172 + HMPREF1058_RS03720 0.55 -0.1
207,176 - HMPREF1058_RS03720 0.55 -0.3
207,176 - HMPREF1058_RS03720 0.55 -0.8
207,177 + HMPREF1058_RS03720 0.55 -2.2
207,181 + HMPREF1058_RS03720 0.55 +0.3
207,248 + HMPREF1058_RS03720 0.60 -1.3
207,283 + HMPREF1058_RS03720 0.63 -0.5
207,327 - HMPREF1058_RS03720 0.66 +1.0
207,336 - HMPREF1058_RS03720 0.66 -0.8
207,456 + HMPREF1058_RS03720 0.75 -1.0
207,457 - HMPREF1058_RS03720 0.75 -3.2
207,472 + HMPREF1058_RS03720 0.76 -0.6
207,483 - HMPREF1058_RS03720 0.77 -1.6
207,501 - HMPREF1058_RS03720 0.78 +0.4
207,515 + HMPREF1058_RS03720 0.79 +0.3
207,526 - HMPREF1058_RS03720 0.80 -1.9
207,591 - HMPREF1058_RS03720 0.84 -2.7
207,591 - HMPREF1058_RS03720 0.84 -1.1
207,635 + HMPREF1058_RS03720 0.87 +0.5
207,638 + HMPREF1058_RS03720 0.87 -0.6
207,639 - HMPREF1058_RS03720 0.88 -0.4
207,639 - HMPREF1058_RS03720 0.88 +0.6
207,673 - -0.9
207,719 - -0.8
207,758 + +0.3
207,758 + -0.5
207,758 + +0.5
207,758 + -1.3
207,759 - -1.0
207,770 + +0.1
207,770 + -0.9
207,771 - -0.5
207,843 - -1.2
207,860 - +1.0
207,872 - +0.5
207,872 - -1.9
207,917 + +0.2
207,919 + +0.1
207,919 + +1.3
207,920 - -2.0
207,924 + +1.1
207,925 - +0.4
207,926 + +1.0
207,926 + -0.5
207,926 + +1.4
207,927 - -0.9
207,927 - -0.7
207,928 + -1.1
207,929 - -0.9
208,036 + HMPREF1058_RS03715 0.19 -0.2
208,036 + HMPREF1058_RS03715 0.19 -0.3
208,037 - HMPREF1058_RS03715 0.19 +0.8
208,057 + HMPREF1058_RS03715 0.21 +0.6
208,092 + HMPREF1058_RS03715 0.25 +3.1
208,158 - HMPREF1058_RS03715 0.32 -0.9
208,159 + +1.4
208,248 - HMPREF1058_RS03715 0.42 -0.8
208,248 - HMPREF1058_RS03715 0.42 +0.0
208,288 - HMPREF1058_RS03715 0.46 +3.0
208,352 - HMPREF1058_RS03715 0.53 -1.3
208,356 + HMPREF1058_RS03715 0.54 +0.9
208,440 + HMPREF1058_RS03715 0.63 +0.4
208,469 + HMPREF1058_RS03715 0.66 -0.0
208,470 - HMPREF1058_RS03715 0.66 -0.0
208,488 + HMPREF1058_RS03715 0.68 +0.9
208,488 + HMPREF1058_RS03715 0.68 +0.3
208,504 + HMPREF1058_RS03715 0.69 +1.9
208,523 + HMPREF1058_RS03715 0.72 +1.2
208,585 + HMPREF1058_RS03715 0.78 +0.6
208,607 - HMPREF1058_RS03715 0.81 -0.4
208,683 + HMPREF1058_RS03715 0.89 +1.0
208,699 - +0.3
208,706 + +1.3
208,707 - -1.4
208,808 - -0.9
208,811 + +1.5
208,846 + +2.4
208,885 + -0.5
208,885 + +1.1
208,909 + +2.2
209,056 + +1.0
209,090 + HMPREF1058_RS03710 0.13 -0.5
209,164 + HMPREF1058_RS03710 0.24 -0.4
209,184 + HMPREF1058_RS03710 0.27 -1.2
209,187 + HMPREF1058_RS03710 0.27 -0.7
209,188 - HMPREF1058_RS03710 0.27 -0.3
209,189 + HMPREF1058_RS03710 0.27 +2.0
209,191 + HMPREF1058_RS03710 0.28 +0.5
209,207 - HMPREF1058_RS03710 0.30 -0.0
209,209 + HMPREF1058_RS03710 0.30 +0.6
209,209 + HMPREF1058_RS03710 0.30 -0.7
209,211 + HMPREF1058_RS03710 0.31 -0.0
209,223 + HMPREF1058_RS03710 0.32 +0.5
209,224 - HMPREF1058_RS03710 0.32 +0.5
209,224 - HMPREF1058_RS03710 0.32 +1.4
209,237 - HMPREF1058_RS03710 0.34 +0.5
209,242 + HMPREF1058_RS03710 0.35 +0.7
209,265 - HMPREF1058_RS03710 0.38 -0.6
209,265 - HMPREF1058_RS03710 0.38 +1.4
209,287 + HMPREF1058_RS03710 0.42 +0.4
209,342 - HMPREF1058_RS03710 0.50 +0.4
209,416 + HMPREF1058_RS03710 0.61 +0.5
209,508 + HMPREF1058_RS03710 0.74 +3.0
209,575 + HMPREF1058_RS03710 0.84 +0.7
209,587 - HMPREF1058_RS03710 0.86 -0.5
209,615 + +1.4
209,616 - +0.2
209,744 - -1.0
209,763 - -1.8

Or see this region's nucleotide sequence