Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03635 and HMPREF1058_RS03630 are separated by 185 nucleotides HMPREF1058_RS03630 and HMPREF1058_RS03625 overlap by 1 nucleotides
HMPREF1058_RS03635: HMPREF1058_RS03635 - YjbH domain-containing protein, at 233,415 to 234,224
_RS03635
HMPREF1058_RS03630: HMPREF1058_RS03630 - WecB/TagA/CpsF family glycosyltransferase, at 234,410 to 235,123
_RS03630
HMPREF1058_RS03625: HMPREF1058_RS03625 - polysaccharide pyruvyl transferase family protein, at 235,123 to 236,199
_RS03625
Position (kb) 234
235
236 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 233.428 kb on - strand at 233.442 kb on - strand at 233.490 kb on - strand at 233.531 kb on + strand, within HMPREF1058_RS03635 at 233.534 kb on - strand, within HMPREF1058_RS03635 at 233.544 kb on - strand, within HMPREF1058_RS03635 at 233.589 kb on - strand, within HMPREF1058_RS03635 at 233.667 kb on - strand, within HMPREF1058_RS03635 at 233.668 kb on + strand, within HMPREF1058_RS03635 at 233.669 kb on - strand, within HMPREF1058_RS03635 at 233.724 kb on - strand, within HMPREF1058_RS03635 at 233.767 kb on + strand, within HMPREF1058_RS03635 at 233.814 kb on + strand, within HMPREF1058_RS03635 at 233.815 kb on - strand, within HMPREF1058_RS03635 at 233.815 kb on - strand, within HMPREF1058_RS03635 at 233.946 kb on - strand, within HMPREF1058_RS03635 at 233.988 kb on + strand at 233.988 kb on + strand, within HMPREF1058_RS03635 at 234.006 kb on - strand, within HMPREF1058_RS03635 at 234.011 kb on + strand, within HMPREF1058_RS03635 at 234.012 kb on - strand, within HMPREF1058_RS03635 at 234.012 kb on - strand, within HMPREF1058_RS03635 at 234.012 kb on - strand, within HMPREF1058_RS03635 at 234.048 kb on + strand, within HMPREF1058_RS03635 at 234.050 kb on + strand, within HMPREF1058_RS03635 at 234.055 kb on + strand, within HMPREF1058_RS03635 at 234.055 kb on + strand, within HMPREF1058_RS03635 at 234.056 kb on - strand, within HMPREF1058_RS03635 at 234.056 kb on - strand, within HMPREF1058_RS03635 at 234.059 kb on + strand, within HMPREF1058_RS03635 at 234.061 kb on + strand, within HMPREF1058_RS03635 at 234.061 kb on + strand, within HMPREF1058_RS03635 at 234.061 kb on + strand, within HMPREF1058_RS03635 at 234.122 kb on + strand, within HMPREF1058_RS03635 at 234.253 kb on - strand at 234.342 kb on + strand at 234.343 kb on - strand at 234.349 kb on - strand at 234.475 kb on + strand at 234.475 kb on + strand at 234.476 kb on - strand at 234.495 kb on + strand, within HMPREF1058_RS03630 at 234.495 kb on + strand, within HMPREF1058_RS03630 at 234.495 kb on + strand, within HMPREF1058_RS03630 at 234.496 kb on - strand, within HMPREF1058_RS03630 at 234.592 kb on + strand, within HMPREF1058_RS03630 at 234.592 kb on + strand, within HMPREF1058_RS03630 at 234.665 kb on + strand, within HMPREF1058_RS03630 at 234.696 kb on - strand, within HMPREF1058_RS03630 at 234.832 kb on + strand, within HMPREF1058_RS03630 at 234.835 kb on - strand, within HMPREF1058_RS03630 at 234.862 kb on - strand, within HMPREF1058_RS03630 at 234.971 kb on - strand, within HMPREF1058_RS03630 at 234.990 kb on - strand, within HMPREF1058_RS03630 at 235.042 kb on - strand, within HMPREF1058_RS03630 at 235.101 kb on + strand at 235.105 kb on + strand at 235.146 kb on - strand at 235.197 kb on - strand at 235.231 kb on - strand, within HMPREF1058_RS03625 at 235.375 kb on - strand, within HMPREF1058_RS03625 at 235.380 kb on - strand, within HMPREF1058_RS03625 at 235.393 kb on - strand, within HMPREF1058_RS03625 at 235.405 kb on + strand, within HMPREF1058_RS03625 at 235.542 kb on - strand, within HMPREF1058_RS03625 at 235.558 kb on - strand, within HMPREF1058_RS03625 at 235.596 kb on + strand, within HMPREF1058_RS03625 at 235.596 kb on + strand, within HMPREF1058_RS03625 at 235.671 kb on + strand, within HMPREF1058_RS03625 at 235.711 kb on + strand, within HMPREF1058_RS03625 at 235.748 kb on - strand, within HMPREF1058_RS03625 at 235.758 kb on + strand, within HMPREF1058_RS03625 at 235.758 kb on + strand, within HMPREF1058_RS03625 at 235.784 kb on + strand, within HMPREF1058_RS03625 at 235.788 kb on + strand, within HMPREF1058_RS03625 at 235.868 kb on - strand, within HMPREF1058_RS03625 at 235.868 kb on - strand, within HMPREF1058_RS03625 at 235.899 kb on - strand, within HMPREF1058_RS03625 at 235.909 kb on - strand, within HMPREF1058_RS03625 at 235.934 kb on + strand, within HMPREF1058_RS03625 at 236.034 kb on + strand, within HMPREF1058_RS03625 at 236.086 kb on - strand, within HMPREF1058_RS03625 at 236.104 kb on - strand at 236.110 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 233,428 - -0.2 233,442 - -1.0 233,490 - +0.3 233,531 + HMPREF1058_RS03635 0.14 +0.5 233,534 - HMPREF1058_RS03635 0.15 +0.7 233,544 - HMPREF1058_RS03635 0.16 +0.4 233,589 - HMPREF1058_RS03635 0.21 -1.1 233,667 - HMPREF1058_RS03635 0.31 -0.6 233,668 + HMPREF1058_RS03635 0.31 -1.1 233,669 - HMPREF1058_RS03635 0.31 -0.2 233,724 - HMPREF1058_RS03635 0.38 -1.9 233,767 + HMPREF1058_RS03635 0.43 +0.9 233,814 + HMPREF1058_RS03635 0.49 +0.1 233,815 - HMPREF1058_RS03635 0.49 -0.5 233,815 - HMPREF1058_RS03635 0.49 +1.1 233,946 - HMPREF1058_RS03635 0.66 +1.4 233,988 + -0.0 233,988 + HMPREF1058_RS03635 0.71 +1.2 234,006 - HMPREF1058_RS03635 0.73 +0.3 234,011 + HMPREF1058_RS03635 0.74 +0.7 234,012 - HMPREF1058_RS03635 0.74 +0.5 234,012 - HMPREF1058_RS03635 0.74 +0.4 234,012 - HMPREF1058_RS03635 0.74 +2.1 234,048 + HMPREF1058_RS03635 0.78 -0.7 234,050 + HMPREF1058_RS03635 0.78 +0.6 234,055 + HMPREF1058_RS03635 0.79 -0.1 234,055 + HMPREF1058_RS03635 0.79 -0.5 234,056 - HMPREF1058_RS03635 0.79 +0.1 234,056 - HMPREF1058_RS03635 0.79 +2.0 234,059 + HMPREF1058_RS03635 0.80 +0.0 234,061 + HMPREF1058_RS03635 0.80 -0.9 234,061 + HMPREF1058_RS03635 0.80 -0.6 234,061 + HMPREF1058_RS03635 0.80 +1.6 234,122 + HMPREF1058_RS03635 0.87 -1.1 234,253 - -0.8 234,342 + +0.4 234,343 - +1.4 234,349 - +1.2 234,475 + -0.6 234,475 + +0.2 234,476 - +0.5 234,495 + HMPREF1058_RS03630 0.12 +1.2 234,495 + HMPREF1058_RS03630 0.12 +0.6 234,495 + HMPREF1058_RS03630 0.12 -2.2 234,496 - HMPREF1058_RS03630 0.12 +2.0 234,592 + HMPREF1058_RS03630 0.25 +2.7 234,592 + HMPREF1058_RS03630 0.25 +1.4 234,665 + HMPREF1058_RS03630 0.36 +2.2 234,696 - HMPREF1058_RS03630 0.40 +0.3 234,832 + HMPREF1058_RS03630 0.59 +2.0 234,835 - HMPREF1058_RS03630 0.60 +2.2 234,862 - HMPREF1058_RS03630 0.63 -0.9 234,971 - HMPREF1058_RS03630 0.79 -0.6 234,990 - HMPREF1058_RS03630 0.81 +1.0 235,042 - HMPREF1058_RS03630 0.89 +1.3 235,101 + -0.7 235,105 + -0.4 235,146 - -1.2 235,197 - -0.1 235,231 - HMPREF1058_RS03625 0.10 +0.2 235,375 - HMPREF1058_RS03625 0.23 +0.4 235,380 - HMPREF1058_RS03625 0.24 -0.6 235,393 - HMPREF1058_RS03625 0.25 +2.0 235,405 + HMPREF1058_RS03625 0.26 -1.5 235,542 - HMPREF1058_RS03625 0.39 +0.1 235,558 - HMPREF1058_RS03625 0.40 +2.4 235,596 + HMPREF1058_RS03625 0.44 +3.3 235,596 + HMPREF1058_RS03625 0.44 +2.3 235,671 + HMPREF1058_RS03625 0.51 +2.7 235,711 + HMPREF1058_RS03625 0.55 +0.6 235,748 - HMPREF1058_RS03625 0.58 +2.3 235,758 + HMPREF1058_RS03625 0.59 -0.4 235,758 + HMPREF1058_RS03625 0.59 -1.5 235,784 + HMPREF1058_RS03625 0.61 +0.4 235,788 + HMPREF1058_RS03625 0.62 -2.4 235,868 - HMPREF1058_RS03625 0.69 +0.8 235,868 - HMPREF1058_RS03625 0.69 +0.6 235,899 - HMPREF1058_RS03625 0.72 -0.4 235,909 - HMPREF1058_RS03625 0.73 -0.4 235,934 + HMPREF1058_RS03625 0.75 -0.4 236,034 + HMPREF1058_RS03625 0.85 -0.5 236,086 - HMPREF1058_RS03625 0.89 -0.6 236,104 - -1.2 236,110 + -1.5
Or see this region's nucleotide sequence