Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03620 and HMPREF1058_RS03615 are separated by 57 nucleotides HMPREF1058_RS03615 and HMPREF1058_RS03610 are separated by 57 nucleotides
HMPREF1058_RS03620: HMPREF1058_RS03620 - glycosyltransferase, at 236,225 to 237,211
_RS03620
HMPREF1058_RS03615: HMPREF1058_RS03615 - glycosyltransferase, at 237,269 to 238,279
_RS03615
HMPREF1058_RS03610: HMPREF1058_RS03610 - glycosyltransferase family 4 protein, at 238,337 to 239,446
_RS03610
Position (kb) 237
238
239 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 236.276 kb on - strand at 236.283 kb on - strand at 236.350 kb on - strand, within HMPREF1058_RS03620 at 236.379 kb on + strand, within HMPREF1058_RS03620 at 236.380 kb on - strand, within HMPREF1058_RS03620 at 236.380 kb on - strand, within HMPREF1058_RS03620 at 236.384 kb on - strand, within HMPREF1058_RS03620 at 236.392 kb on - strand, within HMPREF1058_RS03620 at 236.395 kb on + strand, within HMPREF1058_RS03620 at 236.396 kb on - strand, within HMPREF1058_RS03620 at 236.426 kb on - strand, within HMPREF1058_RS03620 at 236.427 kb on + strand, within HMPREF1058_RS03620 at 236.427 kb on + strand, within HMPREF1058_RS03620 at 236.428 kb on - strand, within HMPREF1058_RS03620 at 236.428 kb on - strand, within HMPREF1058_RS03620 at 236.431 kb on + strand, within HMPREF1058_RS03620 at 236.431 kb on + strand, within HMPREF1058_RS03620 at 236.431 kb on + strand, within HMPREF1058_RS03620 at 236.432 kb on - strand, within HMPREF1058_RS03620 at 236.443 kb on + strand, within HMPREF1058_RS03620 at 236.488 kb on + strand, within HMPREF1058_RS03620 at 236.533 kb on + strand, within HMPREF1058_RS03620 at 236.596 kb on - strand, within HMPREF1058_RS03620 at 236.597 kb on + strand, within HMPREF1058_RS03620 at 236.692 kb on + strand, within HMPREF1058_RS03620 at 236.759 kb on + strand, within HMPREF1058_RS03620 at 236.760 kb on - strand, within HMPREF1058_RS03620 at 236.801 kb on + strand, within HMPREF1058_RS03620 at 236.801 kb on + strand, within HMPREF1058_RS03620 at 236.802 kb on - strand, within HMPREF1058_RS03620 at 236.803 kb on + strand, within HMPREF1058_RS03620 at 236.803 kb on + strand, within HMPREF1058_RS03620 at 236.803 kb on + strand, within HMPREF1058_RS03620 at 236.803 kb on + strand, within HMPREF1058_RS03620 at 236.804 kb on - strand, within HMPREF1058_RS03620 at 236.804 kb on - strand, within HMPREF1058_RS03620 at 236.842 kb on + strand, within HMPREF1058_RS03620 at 236.846 kb on - strand, within HMPREF1058_RS03620 at 236.867 kb on + strand, within HMPREF1058_RS03620 at 236.970 kb on - strand, within HMPREF1058_RS03620 at 236.970 kb on - strand, within HMPREF1058_RS03620 at 236.972 kb on - strand, within HMPREF1058_RS03620 at 236.999 kb on + strand, within HMPREF1058_RS03620 at 237.000 kb on - strand, within HMPREF1058_RS03620 at 237.000 kb on - strand, within HMPREF1058_RS03620 at 237.116 kb on - strand at 237.132 kb on - strand at 237.155 kb on - strand at 237.182 kb on + strand at 237.230 kb on - strand at 237.240 kb on - strand at 237.248 kb on + strand at 237.338 kb on - strand at 237.392 kb on - strand, within HMPREF1058_RS03615 at 237.398 kb on + strand, within HMPREF1058_RS03615 at 237.440 kb on + strand, within HMPREF1058_RS03615 at 237.459 kb on + strand, within HMPREF1058_RS03615 at 237.480 kb on - strand, within HMPREF1058_RS03615 at 237.487 kb on + strand, within HMPREF1058_RS03615 at 237.487 kb on + strand, within HMPREF1058_RS03615 at 237.488 kb on - strand, within HMPREF1058_RS03615 at 237.495 kb on - strand, within HMPREF1058_RS03615 at 237.533 kb on - strand, within HMPREF1058_RS03615 at 237.537 kb on - strand, within HMPREF1058_RS03615 at 237.549 kb on - strand, within HMPREF1058_RS03615 at 237.572 kb on - strand, within HMPREF1058_RS03615 at 237.626 kb on + strand, within HMPREF1058_RS03615 at 237.626 kb on + strand, within HMPREF1058_RS03615 at 237.641 kb on - strand, within HMPREF1058_RS03615 at 237.683 kb on + strand, within HMPREF1058_RS03615 at 237.685 kb on + strand, within HMPREF1058_RS03615 at 237.751 kb on + strand, within HMPREF1058_RS03615 at 237.765 kb on - strand, within HMPREF1058_RS03615 at 237.765 kb on - strand, within HMPREF1058_RS03615 at 237.826 kb on + strand, within HMPREF1058_RS03615 at 237.863 kb on + strand, within HMPREF1058_RS03615 at 237.864 kb on - strand, within HMPREF1058_RS03615 at 237.886 kb on - strand, within HMPREF1058_RS03615 at 237.886 kb on - strand, within HMPREF1058_RS03615 at 237.923 kb on + strand, within HMPREF1058_RS03615 at 237.979 kb on + strand, within HMPREF1058_RS03615 at 237.980 kb on - strand, within HMPREF1058_RS03615 at 238.008 kb on + strand, within HMPREF1058_RS03615 at 238.034 kb on + strand, within HMPREF1058_RS03615 at 238.035 kb on - strand, within HMPREF1058_RS03615 at 238.035 kb on - strand, within HMPREF1058_RS03615 at 238.039 kb on + strand, within HMPREF1058_RS03615 at 238.040 kb on - strand, within HMPREF1058_RS03615 at 238.047 kb on - strand, within HMPREF1058_RS03615 at 238.047 kb on - strand, within HMPREF1058_RS03615 at 238.055 kb on - strand, within HMPREF1058_RS03615 at 238.265 kb on - strand at 238.272 kb on + strand at 238.338 kb on + strand at 238.339 kb on - strand at 238.339 kb on - strand at 238.416 kb on + strand at 238.417 kb on - strand at 238.469 kb on - strand, within HMPREF1058_RS03610 at 238.491 kb on - strand, within HMPREF1058_RS03610 at 238.532 kb on + strand at 238.537 kb on + strand, within HMPREF1058_RS03610 at 238.553 kb on - strand, within HMPREF1058_RS03610 at 238.620 kb on + strand, within HMPREF1058_RS03610 at 238.658 kb on + strand, within HMPREF1058_RS03610 at 238.658 kb on + strand, within HMPREF1058_RS03610 at 238.658 kb on + strand, within HMPREF1058_RS03610 at 238.667 kb on + strand, within HMPREF1058_RS03610 at 238.667 kb on + strand, within HMPREF1058_RS03610 at 238.667 kb on + strand, within HMPREF1058_RS03610 at 238.673 kb on - strand, within HMPREF1058_RS03610 at 238.799 kb on + strand, within HMPREF1058_RS03610 at 238.827 kb on + strand, within HMPREF1058_RS03610 at 238.828 kb on - strand, within HMPREF1058_RS03610 at 238.844 kb on + strand, within HMPREF1058_RS03610 at 238.850 kb on - strand, within HMPREF1058_RS03610 at 238.861 kb on + strand, within HMPREF1058_RS03610 at 238.861 kb on + strand, within HMPREF1058_RS03610 at 238.901 kb on + strand, within HMPREF1058_RS03610 at 238.919 kb on + strand, within HMPREF1058_RS03610 at 239.009 kb on + strand, within HMPREF1058_RS03610 at 239.060 kb on + strand, within HMPREF1058_RS03610 at 239.060 kb on + strand, within HMPREF1058_RS03610 at 239.063 kb on + strand, within HMPREF1058_RS03610 at 239.122 kb on + strand, within HMPREF1058_RS03610 at 239.123 kb on - strand, within HMPREF1058_RS03610 at 239.129 kb on + strand, within HMPREF1058_RS03610 at 239.171 kb on - strand, within HMPREF1058_RS03610 at 239.174 kb on + strand, within HMPREF1058_RS03610 at 239.175 kb on - strand, within HMPREF1058_RS03610 at 239.175 kb on - strand, within HMPREF1058_RS03610 at 239.175 kb on - strand, within HMPREF1058_RS03610 at 239.175 kb on - strand, within HMPREF1058_RS03610 at 239.180 kb on - strand, within HMPREF1058_RS03610 at 239.193 kb on - strand, within HMPREF1058_RS03610 at 239.193 kb on - strand, within HMPREF1058_RS03610 at 239.201 kb on + strand, within HMPREF1058_RS03610 at 239.201 kb on + strand, within HMPREF1058_RS03610 at 239.203 kb on + strand, within HMPREF1058_RS03610 at 239.207 kb on - strand, within HMPREF1058_RS03610 at 239.211 kb on - strand, within HMPREF1058_RS03610 at 239.211 kb on - strand, within HMPREF1058_RS03610 at 239.222 kb on + strand, within HMPREF1058_RS03610 at 239.261 kb on + strand, within HMPREF1058_RS03610 at 239.269 kb on + strand, within HMPREF1058_RS03610 at 239.270 kb on - strand, within HMPREF1058_RS03610
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 236,276 - +2.3 236,283 - -0.2 236,350 - HMPREF1058_RS03620 0.13 +5.8 236,379 + HMPREF1058_RS03620 0.16 +0.7 236,380 - HMPREF1058_RS03620 0.16 +1.7 236,380 - HMPREF1058_RS03620 0.16 -1.3 236,384 - HMPREF1058_RS03620 0.16 -0.2 236,392 - HMPREF1058_RS03620 0.17 -0.7 236,395 + HMPREF1058_RS03620 0.17 +0.7 236,396 - HMPREF1058_RS03620 0.17 -0.2 236,426 - HMPREF1058_RS03620 0.20 +0.7 236,427 + HMPREF1058_RS03620 0.20 -0.3 236,427 + HMPREF1058_RS03620 0.20 +0.4 236,428 - HMPREF1058_RS03620 0.21 +1.6 236,428 - HMPREF1058_RS03620 0.21 -1.1 236,431 + HMPREF1058_RS03620 0.21 +2.6 236,431 + HMPREF1058_RS03620 0.21 +0.5 236,431 + HMPREF1058_RS03620 0.21 -0.0 236,432 - HMPREF1058_RS03620 0.21 +0.2 236,443 + HMPREF1058_RS03620 0.22 -0.6 236,488 + HMPREF1058_RS03620 0.27 -0.2 236,533 + HMPREF1058_RS03620 0.31 -0.9 236,596 - HMPREF1058_RS03620 0.38 -0.0 236,597 + HMPREF1058_RS03620 0.38 -1.3 236,692 + HMPREF1058_RS03620 0.47 -0.6 236,759 + HMPREF1058_RS03620 0.54 -0.1 236,760 - HMPREF1058_RS03620 0.54 +1.1 236,801 + HMPREF1058_RS03620 0.58 -0.8 236,801 + HMPREF1058_RS03620 0.58 -0.7 236,802 - HMPREF1058_RS03620 0.58 +0.0 236,803 + HMPREF1058_RS03620 0.59 +0.7 236,803 + HMPREF1058_RS03620 0.59 -0.1 236,803 + HMPREF1058_RS03620 0.59 -1.5 236,803 + HMPREF1058_RS03620 0.59 +0.9 236,804 - HMPREF1058_RS03620 0.59 -0.2 236,804 - HMPREF1058_RS03620 0.59 +2.6 236,842 + HMPREF1058_RS03620 0.63 -0.5 236,846 - HMPREF1058_RS03620 0.63 +0.6 236,867 + HMPREF1058_RS03620 0.65 -0.5 236,970 - HMPREF1058_RS03620 0.75 -3.1 236,970 - HMPREF1058_RS03620 0.75 -1.8 236,972 - HMPREF1058_RS03620 0.76 +1.5 236,999 + HMPREF1058_RS03620 0.78 -1.3 237,000 - HMPREF1058_RS03620 0.79 +2.8 237,000 - HMPREF1058_RS03620 0.79 -1.4 237,116 - -1.7 237,132 - +1.1 237,155 - +0.2 237,182 + -1.3 237,230 - +0.3 237,240 - -2.6 237,248 + -1.1 237,338 - -1.7 237,392 - HMPREF1058_RS03615 0.12 +0.8 237,398 + HMPREF1058_RS03615 0.13 +0.8 237,440 + HMPREF1058_RS03615 0.17 +0.6 237,459 + HMPREF1058_RS03615 0.19 -0.5 237,480 - HMPREF1058_RS03615 0.21 +1.8 237,487 + HMPREF1058_RS03615 0.22 +1.1 237,487 + HMPREF1058_RS03615 0.22 +2.1 237,488 - HMPREF1058_RS03615 0.22 +2.0 237,495 - HMPREF1058_RS03615 0.22 +3.5 237,533 - HMPREF1058_RS03615 0.26 +3.2 237,537 - HMPREF1058_RS03615 0.27 -1.6 237,549 - HMPREF1058_RS03615 0.28 +1.8 237,572 - HMPREF1058_RS03615 0.30 +0.1 237,626 + HMPREF1058_RS03615 0.35 +1.3 237,626 + HMPREF1058_RS03615 0.35 -1.7 237,641 - HMPREF1058_RS03615 0.37 +1.0 237,683 + HMPREF1058_RS03615 0.41 -1.4 237,685 + HMPREF1058_RS03615 0.41 +1.3 237,751 + HMPREF1058_RS03615 0.48 -0.6 237,765 - HMPREF1058_RS03615 0.49 +0.1 237,765 - HMPREF1058_RS03615 0.49 +0.2 237,826 + HMPREF1058_RS03615 0.55 -1.9 237,863 + HMPREF1058_RS03615 0.59 -0.6 237,864 - HMPREF1058_RS03615 0.59 +1.6 237,886 - HMPREF1058_RS03615 0.61 -0.3 237,886 - HMPREF1058_RS03615 0.61 +1.5 237,923 + HMPREF1058_RS03615 0.65 +0.4 237,979 + HMPREF1058_RS03615 0.70 +2.9 237,980 - HMPREF1058_RS03615 0.70 -1.4 238,008 + HMPREF1058_RS03615 0.73 -0.2 238,034 + HMPREF1058_RS03615 0.76 -1.0 238,035 - HMPREF1058_RS03615 0.76 +1.3 238,035 - HMPREF1058_RS03615 0.76 -1.8 238,039 + HMPREF1058_RS03615 0.76 +0.7 238,040 - HMPREF1058_RS03615 0.76 +1.4 238,047 - HMPREF1058_RS03615 0.77 -0.7 238,047 - HMPREF1058_RS03615 0.77 +1.5 238,055 - HMPREF1058_RS03615 0.78 -2.6 238,265 - -0.1 238,272 + +0.6 238,338 + -0.7 238,339 - -0.2 238,339 - +0.9 238,416 + +0.2 238,417 - +1.7 238,469 - HMPREF1058_RS03610 0.12 +0.3 238,491 - HMPREF1058_RS03610 0.14 +1.4 238,532 + +3.0 238,537 + HMPREF1058_RS03610 0.18 -0.0 238,553 - HMPREF1058_RS03610 0.19 +0.8 238,620 + HMPREF1058_RS03610 0.25 +0.6 238,658 + HMPREF1058_RS03610 0.29 -0.8 238,658 + HMPREF1058_RS03610 0.29 -2.6 238,658 + HMPREF1058_RS03610 0.29 +0.2 238,667 + HMPREF1058_RS03610 0.30 -0.0 238,667 + HMPREF1058_RS03610 0.30 -0.9 238,667 + HMPREF1058_RS03610 0.30 -0.4 238,673 - HMPREF1058_RS03610 0.30 +1.7 238,799 + HMPREF1058_RS03610 0.42 -2.5 238,827 + HMPREF1058_RS03610 0.44 +0.2 238,828 - HMPREF1058_RS03610 0.44 +0.8 238,844 + HMPREF1058_RS03610 0.46 +2.3 238,850 - HMPREF1058_RS03610 0.46 -0.6 238,861 + HMPREF1058_RS03610 0.47 -1.5 238,861 + HMPREF1058_RS03610 0.47 -1.2 238,901 + HMPREF1058_RS03610 0.51 -0.8 238,919 + HMPREF1058_RS03610 0.52 -0.2 239,009 + HMPREF1058_RS03610 0.61 -2.0 239,060 + HMPREF1058_RS03610 0.65 -1.2 239,060 + HMPREF1058_RS03610 0.65 +0.6 239,063 + HMPREF1058_RS03610 0.65 -1.5 239,122 + HMPREF1058_RS03610 0.71 -0.1 239,123 - HMPREF1058_RS03610 0.71 +2.3 239,129 + HMPREF1058_RS03610 0.71 +1.1 239,171 - HMPREF1058_RS03610 0.75 +1.8 239,174 + HMPREF1058_RS03610 0.75 -0.1 239,175 - HMPREF1058_RS03610 0.75 -0.6 239,175 - HMPREF1058_RS03610 0.75 +1.0 239,175 - HMPREF1058_RS03610 0.75 -2.4 239,175 - HMPREF1058_RS03610 0.75 -0.6 239,180 - HMPREF1058_RS03610 0.76 -0.0 239,193 - HMPREF1058_RS03610 0.77 -0.5 239,193 - HMPREF1058_RS03610 0.77 +0.4 239,201 + HMPREF1058_RS03610 0.78 -1.0 239,201 + HMPREF1058_RS03610 0.78 +2.0 239,203 + HMPREF1058_RS03610 0.78 -0.5 239,207 - HMPREF1058_RS03610 0.78 -0.4 239,211 - HMPREF1058_RS03610 0.79 +1.5 239,211 - HMPREF1058_RS03610 0.79 +0.8 239,222 + HMPREF1058_RS03610 0.80 +2.0 239,261 + HMPREF1058_RS03610 0.83 +1.0 239,269 + HMPREF1058_RS03610 0.84 -1.0 239,270 - HMPREF1058_RS03610 0.84 -2.1
Or see this region's nucleotide sequence