Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03570 and HMPREF1058_RS03565 overlap by 4 nucleotides HMPREF1058_RS03565 and HMPREF1058_RS03560 overlap by 4 nucleotides HMPREF1058_RS03560 and HMPREF1058_RS03555 are separated by 30 nucleotides HMPREF1058_RS03555 and HMPREF1058_RS03550 are separated by 210 nucleotides
HMPREF1058_RS03570: HMPREF1058_RS03570 - DUF3791 domain-containing protein, at 247,302 to 247,730
_RS03570
HMPREF1058_RS03565: HMPREF1058_RS03565 - DUF3990 domain-containing protein, at 247,727 to 248,200
_RS03565
HMPREF1058_RS03560: HMPREF1058_RS03560 - hypothetical protein, at 248,197 to 248,424
_RS03560
HMPREF1058_RS03555: HMPREF1058_RS03555 - glutathione peroxidase, at 248,455 to 248,994
_RS03555
HMPREF1058_RS03550: HMPREF1058_RS03550 - AAA family ATPase, at 249,205 to 250,977
_RS03550
Position (kb) 248
249 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 247.529 kb on - strand at 247.731 kb on + strand at 247.732 kb on - strand at 247.732 kb on - strand at 248.001 kb on + strand, within HMPREF1058_RS03565 at 248.002 kb on - strand, within HMPREF1058_RS03565 at 248.060 kb on - strand, within HMPREF1058_RS03565 at 248.082 kb on + strand, within HMPREF1058_RS03565 at 248.084 kb on + strand, within HMPREF1058_RS03565 at 248.085 kb on - strand, within HMPREF1058_RS03565 at 248.115 kb on - strand, within HMPREF1058_RS03565 at 248.116 kb on - strand at 248.116 kb on - strand, within HMPREF1058_RS03565 at 248.116 kb on - strand, within HMPREF1058_RS03565 at 248.422 kb on + strand at 248.457 kb on - strand at 248.627 kb on - strand, within HMPREF1058_RS03555 at 248.627 kb on - strand, within HMPREF1058_RS03555 at 248.647 kb on + strand, within HMPREF1058_RS03555 at 248.689 kb on - strand, within HMPREF1058_RS03555 at 248.832 kb on + strand, within HMPREF1058_RS03555 at 248.902 kb on - strand, within HMPREF1058_RS03555 at 248.914 kb on - strand, within HMPREF1058_RS03555 at 248.922 kb on - strand, within HMPREF1058_RS03555 at 248.978 kb on - strand at 248.982 kb on + strand at 249.004 kb on + strand at 249.014 kb on + strand at 249.169 kb on + strand at 249.179 kb on + strand at 249.286 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 247,529 - -0.0 247,731 + -0.6 247,732 - -1.3 247,732 - +1.2 248,001 + HMPREF1058_RS03565 0.58 +0.6 248,002 - HMPREF1058_RS03565 0.58 -1.4 248,060 - HMPREF1058_RS03565 0.70 +0.2 248,082 + HMPREF1058_RS03565 0.75 -0.8 248,084 + HMPREF1058_RS03565 0.75 +2.1 248,085 - HMPREF1058_RS03565 0.76 +0.5 248,115 - HMPREF1058_RS03565 0.82 -0.3 248,116 - +1.0 248,116 - HMPREF1058_RS03565 0.82 -0.9 248,116 - HMPREF1058_RS03565 0.82 +0.8 248,422 + +0.8 248,457 - -0.5 248,627 - HMPREF1058_RS03555 0.32 -0.2 248,627 - HMPREF1058_RS03555 0.32 +0.7 248,647 + HMPREF1058_RS03555 0.36 -2.1 248,689 - HMPREF1058_RS03555 0.43 +1.1 248,832 + HMPREF1058_RS03555 0.70 -0.6 248,902 - HMPREF1058_RS03555 0.83 +2.0 248,914 - HMPREF1058_RS03555 0.85 +3.0 248,922 - HMPREF1058_RS03555 0.86 +0.2 248,978 - -1.3 248,982 + -0.5 249,004 + -0.1 249,014 + -0.6 249,169 + +0.1 249,179 + -0.5 249,286 + -0.9
Or see this region's nucleotide sequence