Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03545 and HMPREF1058_RS03540 are separated by 115 nucleotides HMPREF1058_RS03540 and HMPREF1058_RS03535 are separated by 80 nucleotides
HMPREF1058_RS03545: HMPREF1058_RS03545 - sigma-54-dependent Fis family transcriptional regulator, at 251,014 to 252,354
_RS03545
HMPREF1058_RS03540: HMPREF1058_RS03540 - sensor histidine kinase, at 252,470 to 253,771
_RS03540
HMPREF1058_RS03535: HMPREF1058_RS03535 - UvrD-helicase domain-containing protein, at 253,852 to 257,028
_RS03535
Position (kb) 252
253
254 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 251.602 kb on - strand, within HMPREF1058_RS03545 at 251.665 kb on - strand, within HMPREF1058_RS03545 at 251.783 kb on + strand, within HMPREF1058_RS03545 at 251.850 kb on - strand, within HMPREF1058_RS03545 at 251.850 kb on - strand, within HMPREF1058_RS03545 at 251.850 kb on - strand at 251.934 kb on + strand, within HMPREF1058_RS03545 at 251.979 kb on + strand, within HMPREF1058_RS03545 at 251.982 kb on + strand, within HMPREF1058_RS03545 at 252.151 kb on - strand, within HMPREF1058_RS03545 at 252.327 kb on + strand at 252.328 kb on - strand at 252.330 kb on + strand at 252.330 kb on + strand at 252.358 kb on - strand at 252.432 kb on + strand at 252.464 kb on + strand at 252.464 kb on + strand at 252.496 kb on + strand at 252.531 kb on + strand at 252.565 kb on - strand at 252.633 kb on + strand, within HMPREF1058_RS03540 at 253.507 kb on + strand, within HMPREF1058_RS03540 at 253.626 kb on + strand, within HMPREF1058_RS03540 at 253.783 kb on + strand at 253.968 kb on + strand at 254.627 kb on + strand, within HMPREF1058_RS03535 at 254.685 kb on - strand, within HMPREF1058_RS03535
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 251,602 - HMPREF1058_RS03545 0.44 -1.4 251,665 - HMPREF1058_RS03545 0.49 -0.7 251,783 + HMPREF1058_RS03545 0.57 +0.9 251,850 - HMPREF1058_RS03545 0.62 +1.4 251,850 - HMPREF1058_RS03545 0.62 -0.6 251,850 - -0.2 251,934 + HMPREF1058_RS03545 0.69 -1.7 251,979 + HMPREF1058_RS03545 0.72 -2.4 251,982 + HMPREF1058_RS03545 0.72 -1.5 252,151 - HMPREF1058_RS03545 0.85 -0.0 252,327 + -1.3 252,328 - +2.0 252,330 + -0.2 252,330 + -1.5 252,358 - +0.6 252,432 + -3.1 252,464 + +0.1 252,464 + -0.4 252,496 + +1.6 252,531 + +0.7 252,565 - -0.0 252,633 + HMPREF1058_RS03540 0.13 +0.6 253,507 + HMPREF1058_RS03540 0.80 -1.9 253,626 + HMPREF1058_RS03540 0.89 +2.2 253,783 + +0.2 253,968 + +2.5 254,627 + HMPREF1058_RS03535 0.24 +2.0 254,685 - HMPREF1058_RS03535 0.26 +1.0
Or see this region's nucleotide sequence