Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03490 and HMPREF1058_RS03485 are separated by 185 nucleotides HMPREF1058_RS03485 and HMPREF1058_RS03480 are separated by 3 nucleotides
HMPREF1058_RS03490: HMPREF1058_RS03490 - glycosyltransferase family 4 protein, at 269,575 to 270,663
_RS03490
HMPREF1058_RS03485: HMPREF1058_RS03485 - RloB domain-containing protein, at 270,849 to 271,484
_RS03485
HMPREF1058_RS03480: HMPREF1058_RS03480 - ATP-binding protein, at 271,488 to 272,708
_RS03480
Position (kb) 270
271
272 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 269.991 kb on + strand, within HMPREF1058_RS03490 at 269.991 kb on + strand, within HMPREF1058_RS03490 at 269.991 kb on + strand, within HMPREF1058_RS03490 at 269.992 kb on - strand, within HMPREF1058_RS03490 at 270.077 kb on + strand, within HMPREF1058_RS03490 at 270.226 kb on + strand, within HMPREF1058_RS03490 at 270.227 kb on - strand, within HMPREF1058_RS03490 at 270.308 kb on + strand, within HMPREF1058_RS03490 at 270.461 kb on + strand, within HMPREF1058_RS03490 at 270.653 kb on - strand at 270.656 kb on - strand at 270.758 kb on - strand at 270.881 kb on + strand at 270.893 kb on + strand at 270.894 kb on - strand at 270.999 kb on - strand, within HMPREF1058_RS03485 at 271.043 kb on + strand, within HMPREF1058_RS03485 at 271.234 kb on + strand, within HMPREF1058_RS03485 at 271.235 kb on - strand, within HMPREF1058_RS03485 at 271.267 kb on - strand, within HMPREF1058_RS03485 at 271.288 kb on - strand, within HMPREF1058_RS03485 at 271.597 kb on + strand at 271.677 kb on - strand, within HMPREF1058_RS03480 at 271.766 kb on + strand, within HMPREF1058_RS03480 at 271.807 kb on - strand, within HMPREF1058_RS03480 at 271.939 kb on + strand, within HMPREF1058_RS03480 at 271.968 kb on - strand, within HMPREF1058_RS03480 at 272.172 kb on + strand, within HMPREF1058_RS03480 at 272.172 kb on + strand, within HMPREF1058_RS03480 at 272.173 kb on - strand, within HMPREF1058_RS03480 at 272.268 kb on + strand, within HMPREF1058_RS03480 at 272.439 kb on + strand, within HMPREF1058_RS03480
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 269,991 + HMPREF1058_RS03490 0.38 -0.6 269,991 + HMPREF1058_RS03490 0.38 +0.5 269,991 + HMPREF1058_RS03490 0.38 +0.4 269,992 - HMPREF1058_RS03490 0.38 +0.7 270,077 + HMPREF1058_RS03490 0.46 +4.3 270,226 + HMPREF1058_RS03490 0.60 +0.5 270,227 - HMPREF1058_RS03490 0.60 -0.7 270,308 + HMPREF1058_RS03490 0.67 +0.4 270,461 + HMPREF1058_RS03490 0.81 -0.4 270,653 - +1.9 270,656 - +0.4 270,758 - +1.3 270,881 + -0.0 270,893 + -0.5 270,894 - -0.4 270,999 - HMPREF1058_RS03485 0.24 -0.6 271,043 + HMPREF1058_RS03485 0.31 +1.3 271,234 + HMPREF1058_RS03485 0.61 -0.8 271,235 - HMPREF1058_RS03485 0.61 -0.4 271,267 - HMPREF1058_RS03485 0.66 +1.6 271,288 - HMPREF1058_RS03485 0.69 +0.8 271,597 + -0.1 271,677 - HMPREF1058_RS03480 0.15 +1.8 271,766 + HMPREF1058_RS03480 0.23 -0.5 271,807 - HMPREF1058_RS03480 0.26 +0.7 271,939 + HMPREF1058_RS03480 0.37 +0.3 271,968 - HMPREF1058_RS03480 0.39 -0.1 272,172 + HMPREF1058_RS03480 0.56 +1.3 272,172 + HMPREF1058_RS03480 0.56 -1.0 272,173 - HMPREF1058_RS03480 0.56 -0.8 272,268 + HMPREF1058_RS03480 0.64 -1.0 272,439 + HMPREF1058_RS03480 0.78 +2.0
Or see this region's nucleotide sequence