Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03400 and HMPREF1058_RS03395 are separated by 7 nucleotides HMPREF1058_RS03395 and HMPREF1058_RS03390 are separated by 13 nucleotides HMPREF1058_RS03390 and HMPREF1058_RS03385 are separated by 20 nucleotides
HMPREF1058_RS03400: HMPREF1058_RS03400 - long-chain fatty acid--CoA ligase, at 288,693 to 289,907
_RS03400
HMPREF1058_RS03395: HMPREF1058_RS03395 - acyl carrier protein, at 289,915 to 290,139
_RS03395
HMPREF1058_RS03390: HMPREF1058_RS03390 - GNAT family N-acetyltransferase, at 290,153 to 290,626
_RS03390
HMPREF1058_RS03385: HMPREF1058_RS03385 - ATP-grasp domain-containing protein, at 290,647 to 291,852
_RS03385
Position (kb) 290
291 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 289.197 kb on - strand, within HMPREF1058_RS03400 at 289.204 kb on + strand, within HMPREF1058_RS03400 at 289.209 kb on - strand, within HMPREF1058_RS03400 at 289.233 kb on + strand, within HMPREF1058_RS03400 at 289.242 kb on + strand, within HMPREF1058_RS03400 at 289.243 kb on - strand, within HMPREF1058_RS03400 at 289.324 kb on - strand, within HMPREF1058_RS03400 at 289.326 kb on + strand, within HMPREF1058_RS03400 at 289.327 kb on - strand, within HMPREF1058_RS03400 at 289.372 kb on + strand, within HMPREF1058_RS03400 at 289.373 kb on - strand, within HMPREF1058_RS03400 at 289.495 kb on + strand, within HMPREF1058_RS03400 at 289.495 kb on + strand, within HMPREF1058_RS03400 at 289.517 kb on - strand, within HMPREF1058_RS03400 at 289.559 kb on + strand, within HMPREF1058_RS03400 at 289.599 kb on - strand, within HMPREF1058_RS03400 at 289.761 kb on - strand, within HMPREF1058_RS03400 at 289.822 kb on - strand at 289.831 kb on + strand at 289.831 kb on + strand at 289.832 kb on - strand at 289.832 kb on - strand at 289.841 kb on + strand at 289.841 kb on + strand at 289.842 kb on - strand at 289.845 kb on + strand at 289.855 kb on - strand at 289.868 kb on - strand at 289.872 kb on - strand at 289.872 kb on - strand at 289.872 kb on - strand at 289.872 kb on - strand at 289.872 kb on - strand at 289.902 kb on - strand at 290.073 kb on + strand, within HMPREF1058_RS03395 at 290.113 kb on - strand, within HMPREF1058_RS03395 at 290.126 kb on - strand at 290.219 kb on + strand, within HMPREF1058_RS03390 at 290.252 kb on + strand, within HMPREF1058_RS03390 at 290.252 kb on + strand, within HMPREF1058_RS03390 at 290.253 kb on - strand, within HMPREF1058_RS03390 at 290.311 kb on - strand, within HMPREF1058_RS03390 at 290.335 kb on + strand, within HMPREF1058_RS03390 at 290.335 kb on + strand, within HMPREF1058_RS03390 at 290.354 kb on - strand, within HMPREF1058_RS03390 at 290.354 kb on - strand, within HMPREF1058_RS03390 at 290.354 kb on - strand, within HMPREF1058_RS03390 at 290.440 kb on + strand, within HMPREF1058_RS03390 at 290.502 kb on + strand, within HMPREF1058_RS03390 at 290.503 kb on - strand, within HMPREF1058_RS03390 at 290.508 kb on - strand, within HMPREF1058_RS03390 at 290.525 kb on - strand, within HMPREF1058_RS03390 at 290.611 kb on + strand at 290.612 kb on - strand at 290.612 kb on - strand at 290.612 kb on - strand at 290.613 kb on + strand at 290.615 kb on + strand at 290.618 kb on + strand at 290.715 kb on + strand at 290.746 kb on - strand at 290.803 kb on + strand, within HMPREF1058_RS03385 at 290.811 kb on - strand, within HMPREF1058_RS03385 at 290.827 kb on - strand, within HMPREF1058_RS03385 at 290.835 kb on - strand, within HMPREF1058_RS03385 at 290.897 kb on + strand, within HMPREF1058_RS03385 at 290.897 kb on + strand, within HMPREF1058_RS03385 at 290.898 kb on - strand, within HMPREF1058_RS03385 at 290.898 kb on - strand, within HMPREF1058_RS03385 at 291.035 kb on + strand at 291.035 kb on + strand, within HMPREF1058_RS03385 at 291.036 kb on - strand, within HMPREF1058_RS03385 at 291.055 kb on + strand, within HMPREF1058_RS03385 at 291.056 kb on - strand, within HMPREF1058_RS03385 at 291.073 kb on - strand, within HMPREF1058_RS03385 at 291.148 kb on - strand, within HMPREF1058_RS03385 at 291.310 kb on - strand, within HMPREF1058_RS03385 at 291.324 kb on + strand, within HMPREF1058_RS03385 at 291.498 kb on + strand, within HMPREF1058_RS03385 at 291.547 kb on + strand, within HMPREF1058_RS03385 at 291.583 kb on - strand, within HMPREF1058_RS03385
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 289,197 - HMPREF1058_RS03400 0.41 +0.6 289,204 + HMPREF1058_RS03400 0.42 +1.2 289,209 - HMPREF1058_RS03400 0.42 -0.0 289,233 + HMPREF1058_RS03400 0.44 +1.1 289,242 + HMPREF1058_RS03400 0.45 +1.0 289,243 - HMPREF1058_RS03400 0.45 +1.5 289,324 - HMPREF1058_RS03400 0.52 -1.3 289,326 + HMPREF1058_RS03400 0.52 -0.0 289,327 - HMPREF1058_RS03400 0.52 -1.9 289,372 + HMPREF1058_RS03400 0.56 +0.3 289,373 - HMPREF1058_RS03400 0.56 -2.1 289,495 + HMPREF1058_RS03400 0.66 +0.2 289,495 + HMPREF1058_RS03400 0.66 +1.5 289,517 - HMPREF1058_RS03400 0.68 +0.5 289,559 + HMPREF1058_RS03400 0.71 -0.4 289,599 - HMPREF1058_RS03400 0.75 +0.5 289,761 - HMPREF1058_RS03400 0.88 +3.0 289,822 - -0.3 289,831 + -1.1 289,831 + +0.3 289,832 - -1.0 289,832 - -1.1 289,841 + +0.3 289,841 + -0.9 289,842 - +0.7 289,845 + -2.3 289,855 - +0.8 289,868 - +0.6 289,872 - -0.9 289,872 - +0.0 289,872 - -0.6 289,872 - +0.9 289,872 - +2.4 289,902 - -1.3 290,073 + HMPREF1058_RS03395 0.70 +2.0 290,113 - HMPREF1058_RS03395 0.88 +2.1 290,126 - -1.1 290,219 + HMPREF1058_RS03390 0.14 -2.1 290,252 + HMPREF1058_RS03390 0.21 +2.0 290,252 + HMPREF1058_RS03390 0.21 -0.3 290,253 - HMPREF1058_RS03390 0.21 +0.2 290,311 - HMPREF1058_RS03390 0.33 -0.1 290,335 + HMPREF1058_RS03390 0.38 -0.0 290,335 + HMPREF1058_RS03390 0.38 +0.6 290,354 - HMPREF1058_RS03390 0.42 -0.9 290,354 - HMPREF1058_RS03390 0.42 -1.4 290,354 - HMPREF1058_RS03390 0.42 +0.9 290,440 + HMPREF1058_RS03390 0.61 +0.8 290,502 + HMPREF1058_RS03390 0.74 +1.0 290,503 - HMPREF1058_RS03390 0.74 -1.8 290,508 - HMPREF1058_RS03390 0.75 +2.5 290,525 - HMPREF1058_RS03390 0.78 +4.4 290,611 + -0.5 290,612 - -1.7 290,612 - +0.3 290,612 - +0.9 290,613 + -1.7 290,615 + +1.8 290,618 + +1.3 290,715 + +0.6 290,746 - +1.0 290,803 + HMPREF1058_RS03385 0.13 +1.6 290,811 - HMPREF1058_RS03385 0.14 -1.0 290,827 - HMPREF1058_RS03385 0.15 +0.6 290,835 - HMPREF1058_RS03385 0.16 -0.3 290,897 + HMPREF1058_RS03385 0.21 +1.4 290,897 + HMPREF1058_RS03385 0.21 -1.4 290,898 - HMPREF1058_RS03385 0.21 -0.4 290,898 - HMPREF1058_RS03385 0.21 -0.2 291,035 + +1.6 291,035 + HMPREF1058_RS03385 0.32 -0.0 291,036 - HMPREF1058_RS03385 0.32 -1.8 291,055 + HMPREF1058_RS03385 0.34 +1.3 291,056 - HMPREF1058_RS03385 0.34 +1.4 291,073 - HMPREF1058_RS03385 0.35 +0.8 291,148 - HMPREF1058_RS03385 0.42 +1.0 291,310 - HMPREF1058_RS03385 0.55 +1.2 291,324 + HMPREF1058_RS03385 0.56 +0.1 291,498 + HMPREF1058_RS03385 0.71 -1.9 291,547 + HMPREF1058_RS03385 0.75 +0.7 291,583 - HMPREF1058_RS03385 0.78 -0.9
Or see this region's nucleotide sequence