Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03300

Experiment: Galactan from Potato 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS03305 and HMPREF1058_RS03300 are separated by 108 nucleotidesHMPREF1058_RS03300 and HMPREF1058_RS03295 are separated by 385 nucleotidesHMPREF1058_RS03295 and HMPREF1058_RS03290 overlap by 11 nucleotides HMPREF1058_RS03305: HMPREF1058_RS03305 - UvrD-helicase domain-containing protein, at 310,122 to 312,512 _RS03305 HMPREF1058_RS03300: HMPREF1058_RS03300 - superoxide dismutase, at 312,621 to 313,238 _RS03300 HMPREF1058_RS03295: HMPREF1058_RS03295 - sulfur carrier protein ThiS, at 313,624 to 313,824 _RS03295 HMPREF1058_RS03290: HMPREF1058_RS03290 - thiamine phosphate synthase, at 313,814 to 314,440 _RS03290 Position (kb) 312 313 314Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 311.689 kb on + strand, within HMPREF1058_RS03305at 311.689 kb on + strand, within HMPREF1058_RS03305at 311.690 kb on - strand, within HMPREF1058_RS03305at 311.690 kb on - strand, within HMPREF1058_RS03305at 311.690 kb on - strand, within HMPREF1058_RS03305at 311.710 kb on - strand, within HMPREF1058_RS03305at 311.711 kb on + strand, within HMPREF1058_RS03305at 311.712 kb on - strand, within HMPREF1058_RS03305at 311.712 kb on - strand, within HMPREF1058_RS03305at 311.744 kb on + strand, within HMPREF1058_RS03305at 311.872 kb on + strand, within HMPREF1058_RS03305at 311.911 kb on + strand, within HMPREF1058_RS03305at 311.915 kb on + strand, within HMPREF1058_RS03305at 311.915 kb on + strand, within HMPREF1058_RS03305at 311.916 kb on - strand, within HMPREF1058_RS03305at 312.019 kb on + strand, within HMPREF1058_RS03305at 312.025 kb on + strandat 312.026 kb on - strand, within HMPREF1058_RS03305at 312.047 kb on - strand, within HMPREF1058_RS03305at 312.047 kb on - strand, within HMPREF1058_RS03305at 312.096 kb on + strand, within HMPREF1058_RS03305at 312.189 kb on - strand, within HMPREF1058_RS03305at 312.201 kb on - strand, within HMPREF1058_RS03305at 312.302 kb on + strandat 312.303 kb on - strandat 312.365 kb on + strandat 312.395 kb on + strandat 312.499 kb on - strandat 312.588 kb on - strandat 312.627 kb on - strandat 312.628 kb on + strandat 312.629 kb on - strandat 312.643 kb on + strandat 312.709 kb on + strand, within HMPREF1058_RS03300at 312.725 kb on + strand, within HMPREF1058_RS03300at 312.728 kb on - strand, within HMPREF1058_RS03300at 312.732 kb on + strand, within HMPREF1058_RS03300at 312.763 kb on + strand, within HMPREF1058_RS03300at 312.763 kb on + strand, within HMPREF1058_RS03300at 312.850 kb on + strand, within HMPREF1058_RS03300at 312.882 kb on - strand, within HMPREF1058_RS03300at 312.886 kb on + strand, within HMPREF1058_RS03300at 313.063 kb on + strand, within HMPREF1058_RS03300at 313.063 kb on + strand, within HMPREF1058_RS03300at 313.064 kb on - strand, within HMPREF1058_RS03300at 313.064 kb on - strand, within HMPREF1058_RS03300at 313.068 kb on - strand, within HMPREF1058_RS03300at 313.068 kb on - strand, within HMPREF1058_RS03300at 313.135 kb on + strandat 313.136 kb on - strand, within HMPREF1058_RS03300at 313.149 kb on + strand, within HMPREF1058_RS03300at 313.149 kb on + strand, within HMPREF1058_RS03300at 313.150 kb on - strand, within HMPREF1058_RS03300at 313.185 kb on - strandat 313.219 kb on + strandat 313.219 kb on + strandat 313.220 kb on - strandat 313.235 kb on - strandat 313.235 kb on - strandat 313.237 kb on - strandat 313.252 kb on + strandat 313.253 kb on - strandat 313.254 kb on + strandat 313.254 kb on + strandat 313.254 kb on + strandat 313.254 kb on + strandat 313.261 kb on + strandat 313.261 kb on + strandat 313.262 kb on - strandat 313.325 kb on + strandat 313.325 kb on + strandat 313.335 kb on - strandat 313.335 kb on - strandat 313.358 kb on + strandat 313.359 kb on - strandat 313.378 kb on + strandat 313.409 kb on + strandat 313.425 kb on - strandat 313.461 kb on + strandat 313.462 kb on - strandat 313.505 kb on + strandat 313.507 kb on + strandat 313.507 kb on + strandat 313.550 kb on + strandat 313.618 kb on + strandat 313.619 kb on - strandat 313.620 kb on + strandat 313.621 kb on - strandat 313.621 kb on - strandat 313.623 kb on + strandat 313.659 kb on - strand, within HMPREF1058_RS03295at 313.754 kb on + strand, within HMPREF1058_RS03295at 313.865 kb on + strandat 313.866 kb on - strandat 313.866 kb on - strandat 313.866 kb on - strandat 313.871 kb on + strandat 313.875 kb on - strandat 313.924 kb on - strand, within HMPREF1058_RS03290at 314.106 kb on + strand, within HMPREF1058_RS03290at 314.107 kb on - strand, within HMPREF1058_RS03290at 314.155 kb on - strand, within HMPREF1058_RS03290at 314.183 kb on + strand, within HMPREF1058_RS03290at 314.184 kb on - strand, within HMPREF1058_RS03290

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C)
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311,689 + HMPREF1058_RS03305 0.66 -0.8
311,689 + HMPREF1058_RS03305 0.66 -0.8
311,690 - HMPREF1058_RS03305 0.66 +2.2
311,690 - HMPREF1058_RS03305 0.66 -1.1
311,690 - HMPREF1058_RS03305 0.66 -1.8
311,710 - HMPREF1058_RS03305 0.66 -1.1
311,711 + HMPREF1058_RS03305 0.66 +2.4
311,712 - HMPREF1058_RS03305 0.66 +1.9
311,712 - HMPREF1058_RS03305 0.66 +0.2
311,744 + HMPREF1058_RS03305 0.68 -0.7
311,872 + HMPREF1058_RS03305 0.73 -0.1
311,911 + HMPREF1058_RS03305 0.75 -0.9
311,915 + HMPREF1058_RS03305 0.75 -0.5
311,915 + HMPREF1058_RS03305 0.75 -2.9
311,916 - HMPREF1058_RS03305 0.75 +0.4
312,019 + HMPREF1058_RS03305 0.79 -0.2
312,025 + +0.8
312,026 - HMPREF1058_RS03305 0.80 +2.0
312,047 - HMPREF1058_RS03305 0.81 -1.1
312,047 - HMPREF1058_RS03305 0.81 +0.4
312,096 + HMPREF1058_RS03305 0.83 -2.0
312,189 - HMPREF1058_RS03305 0.86 -3.0
312,201 - HMPREF1058_RS03305 0.87 +0.4
312,302 + +0.6
312,303 - +1.6
312,365 + -1.8
312,395 + +3.0
312,499 - +0.9
312,588 - +3.8
312,627 - +0.9
312,628 + +1.1
312,629 - +0.1
312,643 + +1.2
312,709 + HMPREF1058_RS03300 0.14 +0.6
312,725 + HMPREF1058_RS03300 0.17 -0.6
312,728 - HMPREF1058_RS03300 0.17 -0.6
312,732 + HMPREF1058_RS03300 0.18 +0.4
312,763 + HMPREF1058_RS03300 0.23 +2.2
312,763 + HMPREF1058_RS03300 0.23 +0.8
312,850 + HMPREF1058_RS03300 0.37 +1.4
312,882 - HMPREF1058_RS03300 0.42 +0.5
312,886 + HMPREF1058_RS03300 0.43 -0.2
313,063 + HMPREF1058_RS03300 0.72 +0.5
313,063 + HMPREF1058_RS03300 0.72 +0.9
313,064 - HMPREF1058_RS03300 0.72 -0.7
313,064 - HMPREF1058_RS03300 0.72 +0.4
313,068 - HMPREF1058_RS03300 0.72 +1.2
313,068 - HMPREF1058_RS03300 0.72 -0.2
313,135 + -0.5
313,136 - HMPREF1058_RS03300 0.83 +0.2
313,149 + HMPREF1058_RS03300 0.85 +1.4
313,149 + HMPREF1058_RS03300 0.85 +0.2
313,150 - HMPREF1058_RS03300 0.86 +0.4
313,185 - +1.3
313,219 + -1.0
313,219 + +0.9
313,220 - -0.9
313,235 - +1.4
313,235 - +0.2
313,237 - -1.4
313,252 + +1.5
313,253 - -2.2
313,254 + +2.0
313,254 + +0.6
313,254 + +0.6
313,254 + +1.2
313,261 + +0.1
313,261 + +1.4
313,262 - -0.4
313,325 + +0.1
313,325 + +0.3
313,335 - -1.4
313,335 - -1.0
313,358 + -0.9
313,359 - -0.4
313,378 + +1.6
313,409 + -0.9
313,425 - +0.2
313,461 + -0.3
313,462 - +0.9
313,505 + -0.1
313,507 + +1.6
313,507 + +0.2
313,550 + -0.7
313,618 + -2.5
313,619 - -1.1
313,620 + -0.1
313,621 - -1.0
313,621 - +0.4
313,623 + -0.5
313,659 - HMPREF1058_RS03295 0.17 -2.0
313,754 + HMPREF1058_RS03295 0.65 +0.0
313,865 + +0.6
313,866 - +0.5
313,866 - -0.8
313,866 - +0.4
313,871 + -0.4
313,875 - +1.4
313,924 - HMPREF1058_RS03290 0.18 +3.0
314,106 + HMPREF1058_RS03290 0.47 -2.0
314,107 - HMPREF1058_RS03290 0.47 -1.5
314,155 - HMPREF1058_RS03290 0.54 -1.1
314,183 + HMPREF1058_RS03290 0.59 -0.0
314,184 - HMPREF1058_RS03290 0.59 -1.3

Or see this region's nucleotide sequence