Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03255 and HMPREF1058_RS03250 are separated by 12 nucleotides HMPREF1058_RS03250 and HMPREF1058_RS03245 are separated by 219 nucleotides HMPREF1058_RS03245 and HMPREF1058_RS03240 are separated by 164 nucleotides
HMPREF1058_RS03255: HMPREF1058_RS03255 - glutathionylspermidine synthase family protein, at 320,149 to 321,273
_RS03255
HMPREF1058_RS03250: HMPREF1058_RS03250 - hypothetical protein, at 321,286 to 321,639
_RS03250
HMPREF1058_RS03245: HMPREF1058_RS03245 - thiamine phosphate synthase, at 321,859 to 322,467
_RS03245
HMPREF1058_RS03240: HMPREF1058_RS03240 - ribose-phosphate pyrophosphokinase, at 322,632 to 323,570
_RS03240
Position (kb) 321
322
323 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 320.923 kb on - strand, within HMPREF1058_RS03255 at 320.923 kb on - strand, within HMPREF1058_RS03255 at 320.968 kb on + strand, within HMPREF1058_RS03255 at 320.969 kb on - strand, within HMPREF1058_RS03255 at 320.969 kb on - strand, within HMPREF1058_RS03255 at 321.165 kb on + strand at 321.176 kb on + strand at 321.284 kb on + strand at 321.291 kb on + strand at 321.292 kb on - strand at 321.435 kb on - strand, within HMPREF1058_RS03250 at 321.437 kb on + strand, within HMPREF1058_RS03250 at 321.437 kb on + strand, within HMPREF1058_RS03250 at 321.437 kb on + strand, within HMPREF1058_RS03250 at 321.438 kb on - strand, within HMPREF1058_RS03250 at 321.438 kb on - strand, within HMPREF1058_RS03250 at 321.438 kb on - strand, within HMPREF1058_RS03250 at 321.440 kb on + strand, within HMPREF1058_RS03250 at 321.450 kb on + strand, within HMPREF1058_RS03250 at 321.494 kb on - strand, within HMPREF1058_RS03250 at 321.506 kb on + strand, within HMPREF1058_RS03250 at 321.507 kb on - strand, within HMPREF1058_RS03250 at 321.678 kb on - strand at 321.705 kb on + strand at 321.705 kb on + strand at 321.705 kb on + strand at 321.706 kb on - strand at 321.761 kb on - strand at 321.814 kb on - strand at 321.817 kb on - strand at 321.822 kb on + strand at 321.823 kb on - strand at 321.823 kb on - strand at 321.830 kb on + strand at 321.847 kb on + strand at 321.859 kb on - strand at 321.866 kb on + strand at 321.866 kb on + strand at 321.915 kb on + strand at 322.015 kb on + strand, within HMPREF1058_RS03245 at 322.117 kb on + strand, within HMPREF1058_RS03245 at 322.187 kb on - strand, within HMPREF1058_RS03245 at 322.301 kb on + strand, within HMPREF1058_RS03245 at 322.478 kb on + strand at 322.511 kb on - strand at 322.529 kb on - strand at 322.532 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 320,923 - HMPREF1058_RS03255 0.69 -0.5 320,923 - HMPREF1058_RS03255 0.69 -0.2 320,968 + HMPREF1058_RS03255 0.73 -2.8 320,969 - HMPREF1058_RS03255 0.73 +0.1 320,969 - HMPREF1058_RS03255 0.73 +0.3 321,165 + -0.7 321,176 + +2.4 321,284 + -0.0 321,291 + -0.1 321,292 - +1.5 321,435 - HMPREF1058_RS03250 0.42 +0.0 321,437 + HMPREF1058_RS03250 0.43 +0.6 321,437 + HMPREF1058_RS03250 0.43 -2.1 321,437 + HMPREF1058_RS03250 0.43 -1.3 321,438 - HMPREF1058_RS03250 0.43 -2.0 321,438 - HMPREF1058_RS03250 0.43 -0.5 321,438 - HMPREF1058_RS03250 0.43 -0.7 321,440 + HMPREF1058_RS03250 0.44 +0.5 321,450 + HMPREF1058_RS03250 0.46 +0.3 321,494 - HMPREF1058_RS03250 0.59 +0.3 321,506 + HMPREF1058_RS03250 0.62 +0.6 321,507 - HMPREF1058_RS03250 0.62 +1.6 321,678 - -0.2 321,705 + +0.6 321,705 + -0.5 321,705 + +1.4 321,706 - -1.0 321,761 - +4.6 321,814 - +0.4 321,817 - -1.0 321,822 + +1.0 321,823 - +1.1 321,823 - +2.6 321,830 + +0.1 321,847 + -0.3 321,859 - -1.3 321,866 + -0.8 321,866 + +0.2 321,915 + -0.0 322,015 + HMPREF1058_RS03245 0.26 +2.4 322,117 + HMPREF1058_RS03245 0.42 +1.1 322,187 - HMPREF1058_RS03245 0.54 +1.4 322,301 + HMPREF1058_RS03245 0.73 +0.6 322,478 + +0.1 322,511 - +0.6 322,529 - -0.0 322,532 - -0.5
Or see this region's nucleotide sequence