Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02980 and HMPREF1058_RS02975 are separated by 2 nucleotides HMPREF1058_RS02975 and HMPREF1058_RS02970 are separated by 21 nucleotides HMPREF1058_RS02970 and HMPREF1058_RS02965 are separated by 228 nucleotides
HMPREF1058_RS02980: HMPREF1058_RS02980 - hypothetical protein, at 39,679 to 41,346
_RS02980
HMPREF1058_RS02975: HMPREF1058_RS02975 - hypothetical protein, at 41,349 to 41,645
_RS02975
HMPREF1058_RS02970: HMPREF1058_RS02970 - DNA mismatch repair endonuclease MutL, at 41,667 to 43,535
_RS02970
HMPREF1058_RS02965: HMPREF1058_RS02965 - BamA/TamA family outer membrane protein, at 43,764 to 44,972
_RS02965
Position (kb) 41
42
43
44 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 41.344 kb on + strand at 41.396 kb on + strand, within HMPREF1058_RS02975 at 41.396 kb on + strand, within HMPREF1058_RS02975 at 41.664 kb on + strand at 41.664 kb on + strand at 41.666 kb on + strand at 42.837 kb on + strand, within HMPREF1058_RS02970 at 42.895 kb on - strand, within HMPREF1058_RS02970 at 42.939 kb on + strand, within HMPREF1058_RS02970 at 42.940 kb on - strand, within HMPREF1058_RS02970 at 42.940 kb on - strand, within HMPREF1058_RS02970 at 43.072 kb on + strand, within HMPREF1058_RS02970 at 43.084 kb on - strand, within HMPREF1058_RS02970 at 43.084 kb on - strand, within HMPREF1058_RS02970 at 43.084 kb on - strand, within HMPREF1058_RS02970 at 43.085 kb on + strand, within HMPREF1058_RS02970 at 43.085 kb on + strand, within HMPREF1058_RS02970 at 43.087 kb on + strand, within HMPREF1058_RS02970 at 43.336 kb on + strand, within HMPREF1058_RS02970 at 43.467 kb on + strand at 43.570 kb on + strand at 43.759 kb on - strand at 43.761 kb on + strand at 43.762 kb on - strand at 43.772 kb on - strand at 43.778 kb on - strand at 43.778 kb on - strand at 43.837 kb on + strand at 43.838 kb on - strand at 43.838 kb on - strand at 43.838 kb on - strand at 43.916 kb on + strand, within HMPREF1058_RS02965 at 43.918 kb on + strand, within HMPREF1058_RS02965 at 43.919 kb on - strand, within HMPREF1058_RS02965 at 43.924 kb on - strand, within HMPREF1058_RS02965 at 43.925 kb on + strand, within HMPREF1058_RS02965 at 43.926 kb on - strand, within HMPREF1058_RS02965 at 43.926 kb on - strand, within HMPREF1058_RS02965 at 43.930 kb on + strand, within HMPREF1058_RS02965 at 43.950 kb on - strand, within HMPREF1058_RS02965 at 43.950 kb on - strand, within HMPREF1058_RS02965 at 43.950 kb on - strand, within HMPREF1058_RS02965 at 43.979 kb on + strand, within HMPREF1058_RS02965 at 43.980 kb on - strand, within HMPREF1058_RS02965 at 43.980 kb on - strand, within HMPREF1058_RS02965 at 43.991 kb on + strand, within HMPREF1058_RS02965 at 43.992 kb on - strand at 44.150 kb on + strand, within HMPREF1058_RS02965 at 44.190 kb on - strand, within HMPREF1058_RS02965 at 44.230 kb on - strand, within HMPREF1058_RS02965 at 44.431 kb on - strand, within HMPREF1058_RS02965 at 44.431 kb on - strand, within HMPREF1058_RS02965 at 44.460 kb on + strand, within HMPREF1058_RS02965 at 44.463 kb on - strand, within HMPREF1058_RS02965 at 44.473 kb on - strand, within HMPREF1058_RS02965 at 44.496 kb on + strand, within HMPREF1058_RS02965 at 44.520 kb on - strand, within HMPREF1058_RS02965 at 44.522 kb on + strand, within HMPREF1058_RS02965
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 41,344 + -1.8 41,396 + HMPREF1058_RS02975 0.16 -6.0 41,396 + HMPREF1058_RS02975 0.16 -3.0 41,664 + +0.7 41,664 + -2.2 41,666 + -1.5 42,837 + HMPREF1058_RS02970 0.63 -1.2 42,895 - HMPREF1058_RS02970 0.66 +1.1 42,939 + HMPREF1058_RS02970 0.68 +1.0 42,940 - HMPREF1058_RS02970 0.68 -1.6 42,940 - HMPREF1058_RS02970 0.68 -0.3 43,072 + HMPREF1058_RS02970 0.75 -0.1 43,084 - HMPREF1058_RS02970 0.76 -0.5 43,084 - HMPREF1058_RS02970 0.76 +3.7 43,084 - HMPREF1058_RS02970 0.76 -0.6 43,085 + HMPREF1058_RS02970 0.76 +0.8 43,085 + HMPREF1058_RS02970 0.76 -0.4 43,087 + HMPREF1058_RS02970 0.76 +1.1 43,336 + HMPREF1058_RS02970 0.89 +1.1 43,467 + +1.0 43,570 + -0.3 43,759 - -1.8 43,761 + +0.6 43,762 - -0.8 43,772 - +0.8 43,778 - -0.6 43,778 - -2.6 43,837 + +0.7 43,838 - -0.1 43,838 - +0.4 43,838 - +0.1 43,916 + HMPREF1058_RS02965 0.13 +0.0 43,918 + HMPREF1058_RS02965 0.13 -0.5 43,919 - HMPREF1058_RS02965 0.13 +0.4 43,924 - HMPREF1058_RS02965 0.13 -0.2 43,925 + HMPREF1058_RS02965 0.13 -1.1 43,926 - HMPREF1058_RS02965 0.13 +0.3 43,926 - HMPREF1058_RS02965 0.13 +0.1 43,930 + HMPREF1058_RS02965 0.14 -0.7 43,950 - HMPREF1058_RS02965 0.15 -0.8 43,950 - HMPREF1058_RS02965 0.15 +0.5 43,950 - HMPREF1058_RS02965 0.15 -0.1 43,979 + HMPREF1058_RS02965 0.18 +0.3 43,980 - HMPREF1058_RS02965 0.18 -0.3 43,980 - HMPREF1058_RS02965 0.18 -0.4 43,991 + HMPREF1058_RS02965 0.19 +1.1 43,992 - -0.6 44,150 + HMPREF1058_RS02965 0.32 -0.6 44,190 - HMPREF1058_RS02965 0.35 -1.6 44,230 - HMPREF1058_RS02965 0.39 -1.2 44,431 - HMPREF1058_RS02965 0.55 -0.3 44,431 - HMPREF1058_RS02965 0.55 -1.0 44,460 + HMPREF1058_RS02965 0.58 -0.1 44,463 - HMPREF1058_RS02965 0.58 -0.3 44,473 - HMPREF1058_RS02965 0.59 +0.3 44,496 + HMPREF1058_RS02965 0.61 +0.6 44,520 - HMPREF1058_RS02965 0.63 +0.4 44,522 + HMPREF1058_RS02965 0.63 +2.2
Or see this region's nucleotide sequence