Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02830 and HMPREF1058_RS02825 are separated by 98 nucleotides HMPREF1058_RS02825 and HMPREF1058_RS02820 are separated by 13 nucleotides
HMPREF1058_RS02830: HMPREF1058_RS02830 - DUF4982 domain-containing protein, at 81,043 to 83,490
_RS02830
HMPREF1058_RS02825: HMPREF1058_RS02825 - RagB/SusD family nutrient uptake outer membrane protein, at 83,589 to 85,130
_RS02825
HMPREF1058_RS02820: HMPREF1058_RS02820 - TonB-dependent receptor, at 85,144 to 88,497
_RS02820
Position (kb) 83
84
85
86 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 82.652 kb on - strand, within HMPREF1058_RS02830 at 82.656 kb on + strand, within HMPREF1058_RS02830 at 82.657 kb on - strand, within HMPREF1058_RS02830 at 82.677 kb on + strand, within HMPREF1058_RS02830 at 82.696 kb on + strand, within HMPREF1058_RS02830 at 82.698 kb on + strand, within HMPREF1058_RS02830 at 82.698 kb on + strand, within HMPREF1058_RS02830 at 82.698 kb on + strand, within HMPREF1058_RS02830 at 82.698 kb on + strand, within HMPREF1058_RS02830 at 82.698 kb on + strand, within HMPREF1058_RS02830 at 82.699 kb on - strand, within HMPREF1058_RS02830 at 82.699 kb on - strand, within HMPREF1058_RS02830 at 82.699 kb on - strand, within HMPREF1058_RS02830 at 82.699 kb on - strand, within HMPREF1058_RS02830 at 82.699 kb on - strand, within HMPREF1058_RS02830 at 82.699 kb on - strand, within HMPREF1058_RS02830 at 82.699 kb on - strand, within HMPREF1058_RS02830 at 82.885 kb on - strand, within HMPREF1058_RS02830 at 82.888 kb on + strand, within HMPREF1058_RS02830 at 82.895 kb on + strand, within HMPREF1058_RS02830 at 82.979 kb on + strand, within HMPREF1058_RS02830 at 83.007 kb on + strand, within HMPREF1058_RS02830 at 83.008 kb on - strand, within HMPREF1058_RS02830 at 83.010 kb on - strand, within HMPREF1058_RS02830 at 83.048 kb on - strand, within HMPREF1058_RS02830 at 83.079 kb on - strand, within HMPREF1058_RS02830 at 83.093 kb on + strand, within HMPREF1058_RS02830 at 83.096 kb on - strand, within HMPREF1058_RS02830 at 83.096 kb on - strand, within HMPREF1058_RS02830 at 83.168 kb on - strand, within HMPREF1058_RS02830 at 83.297 kb on + strand at 83.297 kb on + strand at 83.308 kb on + strand at 83.309 kb on - strand at 83.358 kb on - strand at 83.422 kb on + strand at 83.462 kb on - strand at 83.565 kb on - strand at 83.566 kb on + strand at 83.566 kb on + strand at 83.566 kb on + strand at 83.567 kb on - strand at 83.567 kb on - strand at 83.568 kb on + strand at 83.571 kb on - strand at 83.575 kb on + strand at 83.575 kb on + strand at 83.590 kb on + strand at 83.609 kb on + strand at 83.609 kb on + strand at 83.653 kb on + strand at 83.654 kb on - strand at 83.663 kb on + strand at 83.699 kb on + strand at 83.724 kb on + strand at 83.805 kb on + strand, within HMPREF1058_RS02825 at 83.846 kb on + strand, within HMPREF1058_RS02825 at 83.848 kb on + strand, within HMPREF1058_RS02825 at 83.882 kb on + strand, within HMPREF1058_RS02825 at 83.885 kb on + strand, within HMPREF1058_RS02825 at 83.885 kb on + strand, within HMPREF1058_RS02825 at 83.886 kb on - strand, within HMPREF1058_RS02825 at 83.894 kb on + strand, within HMPREF1058_RS02825 at 83.895 kb on - strand, within HMPREF1058_RS02825 at 83.921 kb on + strand, within HMPREF1058_RS02825 at 83.923 kb on + strand, within HMPREF1058_RS02825 at 83.924 kb on - strand, within HMPREF1058_RS02825 at 84.109 kb on + strand, within HMPREF1058_RS02825 at 84.212 kb on - strand, within HMPREF1058_RS02825 at 84.325 kb on - strand, within HMPREF1058_RS02825 at 84.390 kb on + strand, within HMPREF1058_RS02825 at 84.397 kb on + strand, within HMPREF1058_RS02825 at 84.461 kb on - strand, within HMPREF1058_RS02825 at 84.468 kb on + strand, within HMPREF1058_RS02825 at 84.468 kb on + strand, within HMPREF1058_RS02825 at 84.468 kb on + strand, within HMPREF1058_RS02825 at 84.469 kb on - strand, within HMPREF1058_RS02825 at 84.576 kb on + strand, within HMPREF1058_RS02825 at 84.676 kb on - strand, within HMPREF1058_RS02825 at 84.833 kb on + strand, within HMPREF1058_RS02825 at 84.834 kb on - strand, within HMPREF1058_RS02825 at 84.837 kb on - strand, within HMPREF1058_RS02825 at 84.839 kb on + strand, within HMPREF1058_RS02825 at 84.861 kb on - strand, within HMPREF1058_RS02825 at 84.861 kb on - strand, within HMPREF1058_RS02825 at 84.862 kb on + strand, within HMPREF1058_RS02825 at 84.864 kb on + strand, within HMPREF1058_RS02825 at 84.865 kb on - strand, within HMPREF1058_RS02825 at 84.865 kb on - strand, within HMPREF1058_RS02825 at 84.909 kb on + strand, within HMPREF1058_RS02825 at 84.909 kb on + strand, within HMPREF1058_RS02825 at 85.057 kb on - strand at 85.120 kb on + strand at 85.200 kb on + strand at 85.266 kb on + strand at 85.269 kb on + strand at 85.290 kb on + strand at 85.291 kb on - strand at 85.291 kb on - strand at 85.309 kb on + strand at 85.309 kb on + strand at 85.341 kb on + strand at 85.341 kb on + strand at 85.341 kb on + strand at 85.342 kb on - strand at 85.349 kb on - strand at 85.373 kb on + strand at 85.526 kb on - strand, within HMPREF1058_RS02820 at 85.545 kb on + strand, within HMPREF1058_RS02820 at 85.548 kb on - strand, within HMPREF1058_RS02820 at 85.804 kb on - strand, within HMPREF1058_RS02820 at 85.821 kb on + strand, within HMPREF1058_RS02820 at 85.867 kb on - strand, within HMPREF1058_RS02820 at 85.909 kb on + strand, within HMPREF1058_RS02820 at 85.909 kb on + strand, within HMPREF1058_RS02820 at 85.936 kb on + strand, within HMPREF1058_RS02820 at 85.985 kb on - strand, within HMPREF1058_RS02820 at 86.008 kb on - strand, within HMPREF1058_RS02820 at 86.012 kb on - strand, within HMPREF1058_RS02820 at 86.029 kb on + strand, within HMPREF1058_RS02820 at 86.030 kb on - strand, within HMPREF1058_RS02820 at 86.058 kb on + strand, within HMPREF1058_RS02820 at 86.058 kb on + strand, within HMPREF1058_RS02820 at 86.058 kb on + strand, within HMPREF1058_RS02820 at 86.082 kb on + strand, within HMPREF1058_RS02820 at 86.082 kb on + strand, within HMPREF1058_RS02820 at 86.083 kb on - strand, within HMPREF1058_RS02820 at 86.102 kb on + strand, within HMPREF1058_RS02820 at 86.105 kb on + strand, within HMPREF1058_RS02820 at 86.105 kb on + strand, within HMPREF1058_RS02820 at 86.116 kb on + strand, within HMPREF1058_RS02820
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 82,652 - HMPREF1058_RS02830 0.66 -0.9 82,656 + HMPREF1058_RS02830 0.66 -2.8 82,657 - HMPREF1058_RS02830 0.66 -0.6 82,677 + HMPREF1058_RS02830 0.67 -1.3 82,696 + HMPREF1058_RS02830 0.68 -0.3 82,698 + HMPREF1058_RS02830 0.68 -0.8 82,698 + HMPREF1058_RS02830 0.68 -1.5 82,698 + HMPREF1058_RS02830 0.68 -0.2 82,698 + HMPREF1058_RS02830 0.68 -1.2 82,698 + HMPREF1058_RS02830 0.68 +0.2 82,699 - HMPREF1058_RS02830 0.68 -1.0 82,699 - HMPREF1058_RS02830 0.68 -1.0 82,699 - HMPREF1058_RS02830 0.68 -0.8 82,699 - HMPREF1058_RS02830 0.68 +0.0 82,699 - HMPREF1058_RS02830 0.68 -0.9 82,699 - HMPREF1058_RS02830 0.68 +0.2 82,699 - HMPREF1058_RS02830 0.68 +0.3 82,885 - HMPREF1058_RS02830 0.75 -0.7 82,888 + HMPREF1058_RS02830 0.75 -1.5 82,895 + HMPREF1058_RS02830 0.76 +1.5 82,979 + HMPREF1058_RS02830 0.79 -1.2 83,007 + HMPREF1058_RS02830 0.80 -0.7 83,008 - HMPREF1058_RS02830 0.80 +0.7 83,010 - HMPREF1058_RS02830 0.80 -1.2 83,048 - HMPREF1058_RS02830 0.82 -2.0 83,079 - HMPREF1058_RS02830 0.83 -1.5 83,093 + HMPREF1058_RS02830 0.84 -0.4 83,096 - HMPREF1058_RS02830 0.84 +0.4 83,096 - HMPREF1058_RS02830 0.84 -1.4 83,168 - HMPREF1058_RS02830 0.87 -1.1 83,297 + +0.3 83,297 + -0.1 83,308 + -0.5 83,309 - -0.9 83,358 - +1.1 83,422 + -1.0 83,462 - +0.2 83,565 - -1.9 83,566 + -1.3 83,566 + +0.8 83,566 + +0.4 83,567 - +0.4 83,567 - -1.3 83,568 + -0.1 83,571 - -3.2 83,575 + +0.2 83,575 + -1.5 83,590 + -2.9 83,609 + +0.8 83,609 + -0.9 83,653 + +0.0 83,654 - -3.8 83,663 + -2.0 83,699 + -0.6 83,724 + +0.2 83,805 + HMPREF1058_RS02825 0.14 +0.1 83,846 + HMPREF1058_RS02825 0.17 +2.2 83,848 + HMPREF1058_RS02825 0.17 +0.3 83,882 + HMPREF1058_RS02825 0.19 -0.4 83,885 + HMPREF1058_RS02825 0.19 -0.9 83,885 + HMPREF1058_RS02825 0.19 -2.1 83,886 - HMPREF1058_RS02825 0.19 -0.3 83,894 + HMPREF1058_RS02825 0.20 -2.5 83,895 - HMPREF1058_RS02825 0.20 -2.4 83,921 + HMPREF1058_RS02825 0.22 -1.9 83,923 + HMPREF1058_RS02825 0.22 -1.9 83,924 - HMPREF1058_RS02825 0.22 -1.1 84,109 + HMPREF1058_RS02825 0.34 -1.6 84,212 - HMPREF1058_RS02825 0.40 -1.0 84,325 - HMPREF1058_RS02825 0.48 -1.6 84,390 + HMPREF1058_RS02825 0.52 -0.7 84,397 + HMPREF1058_RS02825 0.52 -2.2 84,461 - HMPREF1058_RS02825 0.57 -1.3 84,468 + HMPREF1058_RS02825 0.57 -2.0 84,468 + HMPREF1058_RS02825 0.57 -3.4 84,468 + HMPREF1058_RS02825 0.57 -1.1 84,469 - HMPREF1058_RS02825 0.57 -2.1 84,576 + HMPREF1058_RS02825 0.64 -0.8 84,676 - HMPREF1058_RS02825 0.70 -2.2 84,833 + HMPREF1058_RS02825 0.81 -2.6 84,834 - HMPREF1058_RS02825 0.81 -1.1 84,837 - HMPREF1058_RS02825 0.81 -3.3 84,839 + HMPREF1058_RS02825 0.81 -1.9 84,861 - HMPREF1058_RS02825 0.82 -1.8 84,861 - HMPREF1058_RS02825 0.82 -1.4 84,862 + HMPREF1058_RS02825 0.83 -1.3 84,864 + HMPREF1058_RS02825 0.83 -0.0 84,865 - HMPREF1058_RS02825 0.83 -1.3 84,865 - HMPREF1058_RS02825 0.83 -1.8 84,909 + HMPREF1058_RS02825 0.86 -1.8 84,909 + HMPREF1058_RS02825 0.86 -1.4 85,057 - -1.3 85,120 + +1.2 85,200 + -1.4 85,266 + -0.5 85,269 + -0.6 85,290 + -2.8 85,291 - -1.5 85,291 - -2.6 85,309 + -1.4 85,309 + -0.1 85,341 + -2.4 85,341 + +0.6 85,341 + -0.1 85,342 - -1.5 85,349 - -1.2 85,373 + +0.6 85,526 - HMPREF1058_RS02820 0.11 -0.4 85,545 + HMPREF1058_RS02820 0.12 -0.1 85,548 - HMPREF1058_RS02820 0.12 -1.4 85,804 - HMPREF1058_RS02820 0.20 -2.3 85,821 + HMPREF1058_RS02820 0.20 -0.1 85,867 - HMPREF1058_RS02820 0.22 +0.6 85,909 + HMPREF1058_RS02820 0.23 -2.6 85,909 + HMPREF1058_RS02820 0.23 +0.7 85,936 + HMPREF1058_RS02820 0.24 -2.1 85,985 - HMPREF1058_RS02820 0.25 -0.9 86,008 - HMPREF1058_RS02820 0.26 -1.2 86,012 - HMPREF1058_RS02820 0.26 -0.9 86,029 + HMPREF1058_RS02820 0.26 -0.5 86,030 - HMPREF1058_RS02820 0.26 -0.6 86,058 + HMPREF1058_RS02820 0.27 +0.0 86,058 + HMPREF1058_RS02820 0.27 -1.9 86,058 + HMPREF1058_RS02820 0.27 -1.5 86,082 + HMPREF1058_RS02820 0.28 -1.5 86,082 + HMPREF1058_RS02820 0.28 -1.6 86,083 - HMPREF1058_RS02820 0.28 -2.4 86,102 + HMPREF1058_RS02820 0.29 -0.6 86,105 + HMPREF1058_RS02820 0.29 +1.6 86,105 + HMPREF1058_RS02820 0.29 -0.6 86,116 + HMPREF1058_RS02820 0.29 -2.1
Or see this region's nucleotide sequence