Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02820

Experiment: Galactan from Potato 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS02825 and HMPREF1058_RS02820 are separated by 13 nucleotidesHMPREF1058_RS02820 and HMPREF1058_RS02815 are separated by 152 nucleotides HMPREF1058_RS02825: HMPREF1058_RS02825 - RagB/SusD family nutrient uptake outer membrane protein, at 83,589 to 85,130 _RS02825 HMPREF1058_RS02820: HMPREF1058_RS02820 - TonB-dependent receptor, at 85,144 to 88,497 _RS02820 HMPREF1058_RS02815: HMPREF1058_RS02815 - FecR family protein, at 88,650 to 89,585 _RS02815 Position (kb) 85 86 87 88 89Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 84.212 kb on - strand, within HMPREF1058_RS02825at 84.325 kb on - strand, within HMPREF1058_RS02825at 84.390 kb on + strand, within HMPREF1058_RS02825at 84.397 kb on + strand, within HMPREF1058_RS02825at 84.461 kb on - strand, within HMPREF1058_RS02825at 84.468 kb on + strand, within HMPREF1058_RS02825at 84.468 kb on + strand, within HMPREF1058_RS02825at 84.468 kb on + strand, within HMPREF1058_RS02825at 84.469 kb on - strand, within HMPREF1058_RS02825at 84.576 kb on + strand, within HMPREF1058_RS02825at 84.676 kb on - strand, within HMPREF1058_RS02825at 84.833 kb on + strand, within HMPREF1058_RS02825at 84.834 kb on - strand, within HMPREF1058_RS02825at 84.837 kb on - strand, within HMPREF1058_RS02825at 84.839 kb on + strand, within HMPREF1058_RS02825at 84.861 kb on - strand, within HMPREF1058_RS02825at 84.861 kb on - strand, within HMPREF1058_RS02825at 84.862 kb on + strand, within HMPREF1058_RS02825at 84.864 kb on + strand, within HMPREF1058_RS02825at 84.865 kb on - strand, within HMPREF1058_RS02825at 84.865 kb on - strand, within HMPREF1058_RS02825at 84.909 kb on + strand, within HMPREF1058_RS02825at 84.909 kb on + strand, within HMPREF1058_RS02825at 85.057 kb on - strandat 85.120 kb on + strandat 85.200 kb on + strandat 85.266 kb on + strandat 85.269 kb on + strandat 85.290 kb on + strandat 85.291 kb on - strandat 85.291 kb on - strandat 85.309 kb on + strandat 85.309 kb on + strandat 85.341 kb on + strandat 85.341 kb on + strandat 85.341 kb on + strandat 85.342 kb on - strandat 85.349 kb on - strandat 85.373 kb on + strandat 85.526 kb on - strand, within HMPREF1058_RS02820at 85.545 kb on + strand, within HMPREF1058_RS02820at 85.548 kb on - strand, within HMPREF1058_RS02820at 85.804 kb on - strand, within HMPREF1058_RS02820at 85.821 kb on + strand, within HMPREF1058_RS02820at 85.867 kb on - strand, within HMPREF1058_RS02820at 85.909 kb on + strand, within HMPREF1058_RS02820at 85.909 kb on + strand, within HMPREF1058_RS02820at 85.936 kb on + strand, within HMPREF1058_RS02820at 85.985 kb on - strand, within HMPREF1058_RS02820at 86.008 kb on - strand, within HMPREF1058_RS02820at 86.012 kb on - strand, within HMPREF1058_RS02820at 86.029 kb on + strand, within HMPREF1058_RS02820at 86.030 kb on - strand, within HMPREF1058_RS02820at 86.058 kb on + strand, within HMPREF1058_RS02820at 86.058 kb on + strand, within HMPREF1058_RS02820at 86.058 kb on + strand, within HMPREF1058_RS02820at 86.082 kb on + strand, within HMPREF1058_RS02820at 86.082 kb on + strand, within HMPREF1058_RS02820at 86.083 kb on - strand, within HMPREF1058_RS02820at 86.102 kb on + strand, within HMPREF1058_RS02820at 86.105 kb on + strand, within HMPREF1058_RS02820at 86.105 kb on + strand, within HMPREF1058_RS02820at 86.116 kb on + strand, within HMPREF1058_RS02820at 86.286 kb on - strand, within HMPREF1058_RS02820at 86.411 kb on + strand, within HMPREF1058_RS02820at 86.481 kb on + strand, within HMPREF1058_RS02820at 86.482 kb on - strand, within HMPREF1058_RS02820at 86.495 kb on + strand, within HMPREF1058_RS02820at 86.496 kb on - strand, within HMPREF1058_RS02820at 86.575 kb on + strand, within HMPREF1058_RS02820at 86.576 kb on - strand, within HMPREF1058_RS02820at 86.610 kb on - strand, within HMPREF1058_RS02820at 86.617 kb on + strand, within HMPREF1058_RS02820at 86.617 kb on + strand, within HMPREF1058_RS02820at 86.618 kb on - strand, within HMPREF1058_RS02820at 86.646 kb on + strand, within HMPREF1058_RS02820at 86.647 kb on - strand, within HMPREF1058_RS02820at 86.647 kb on - strand, within HMPREF1058_RS02820at 86.649 kb on - strand, within HMPREF1058_RS02820at 86.649 kb on - strand, within HMPREF1058_RS02820at 86.670 kb on + strand, within HMPREF1058_RS02820at 86.686 kb on - strand, within HMPREF1058_RS02820at 86.716 kb on + strand, within HMPREF1058_RS02820at 86.722 kb on - strand, within HMPREF1058_RS02820at 86.787 kb on + strand, within HMPREF1058_RS02820at 86.788 kb on - strand, within HMPREF1058_RS02820at 86.804 kb on + strand, within HMPREF1058_RS02820at 86.831 kb on - strand, within HMPREF1058_RS02820at 86.972 kb on + strand, within HMPREF1058_RS02820at 86.972 kb on + strand, within HMPREF1058_RS02820at 87.022 kb on - strand, within HMPREF1058_RS02820at 87.124 kb on + strand, within HMPREF1058_RS02820at 87.135 kb on + strand, within HMPREF1058_RS02820at 87.135 kb on + strand, within HMPREF1058_RS02820at 87.136 kb on - strand, within HMPREF1058_RS02820at 87.138 kb on - strand, within HMPREF1058_RS02820at 87.159 kb on + strand, within HMPREF1058_RS02820at 87.171 kb on - strand, within HMPREF1058_RS02820at 87.171 kb on - strand, within HMPREF1058_RS02820at 87.177 kb on + strand, within HMPREF1058_RS02820at 87.211 kb on + strand, within HMPREF1058_RS02820at 87.343 kb on + strand, within HMPREF1058_RS02820at 87.373 kb on + strand, within HMPREF1058_RS02820at 87.374 kb on - strand, within HMPREF1058_RS02820at 87.375 kb on + strand, within HMPREF1058_RS02820at 87.376 kb on - strand, within HMPREF1058_RS02820at 87.407 kb on - strand, within HMPREF1058_RS02820at 87.407 kb on - strand, within HMPREF1058_RS02820at 87.439 kb on - strand, within HMPREF1058_RS02820at 87.442 kb on + strand, within HMPREF1058_RS02820at 87.454 kb on + strand, within HMPREF1058_RS02820at 87.536 kb on + strand, within HMPREF1058_RS02820at 87.537 kb on - strand, within HMPREF1058_RS02820at 87.597 kb on + strand, within HMPREF1058_RS02820at 87.598 kb on - strand, within HMPREF1058_RS02820at 87.606 kb on + strand, within HMPREF1058_RS02820at 87.615 kb on + strand, within HMPREF1058_RS02820at 87.615 kb on + strand, within HMPREF1058_RS02820at 87.617 kb on + strand, within HMPREF1058_RS02820at 87.617 kb on + strand, within HMPREF1058_RS02820at 87.617 kb on + strand, within HMPREF1058_RS02820at 87.617 kb on + strand, within HMPREF1058_RS02820at 87.617 kb on + strand, within HMPREF1058_RS02820at 87.618 kb on - strand, within HMPREF1058_RS02820at 87.635 kb on + strand, within HMPREF1058_RS02820at 87.635 kb on + strand, within HMPREF1058_RS02820at 87.636 kb on - strand, within HMPREF1058_RS02820at 87.636 kb on - strand, within HMPREF1058_RS02820at 87.660 kb on + strand, within HMPREF1058_RS02820at 87.715 kb on + strand, within HMPREF1058_RS02820at 87.716 kb on - strand, within HMPREF1058_RS02820at 87.781 kb on + strand, within HMPREF1058_RS02820at 87.876 kb on + strand, within HMPREF1058_RS02820at 87.886 kb on + strand, within HMPREF1058_RS02820at 88.000 kb on + strand, within HMPREF1058_RS02820at 88.001 kb on - strand, within HMPREF1058_RS02820at 88.002 kb on + strandat 88.137 kb on + strand, within HMPREF1058_RS02820at 88.147 kb on - strand, within HMPREF1058_RS02820at 88.155 kb on + strand, within HMPREF1058_RS02820at 88.156 kb on - strand, within HMPREF1058_RS02820at 88.255 kb on - strandat 88.258 kb on + strandat 88.272 kb on - strandat 88.338 kb on + strandat 88.343 kb on - strandat 88.470 kb on - strandat 88.470 kb on - strandat 88.633 kb on - strandat 88.694 kb on + strandat 88.695 kb on - strandat 88.729 kb on + strandat 88.730 kb on - strandat 88.771 kb on + strand, within HMPREF1058_RS02815at 88.772 kb on - strand, within HMPREF1058_RS02815at 88.936 kb on - strand, within HMPREF1058_RS02815at 89.016 kb on + strand, within HMPREF1058_RS02815at 89.056 kb on + strand, within HMPREF1058_RS02815at 89.056 kb on - strand, within HMPREF1058_RS02815at 89.089 kb on + strand, within HMPREF1058_RS02815at 89.089 kb on + strand, within HMPREF1058_RS02815at 89.133 kb on + strand, within HMPREF1058_RS02815at 89.134 kb on - strand, within HMPREF1058_RS02815at 89.232 kb on - strand, within HMPREF1058_RS02815at 89.232 kb on - strand, within HMPREF1058_RS02815at 89.232 kb on - strand, within HMPREF1058_RS02815at 89.249 kb on + strand, within HMPREF1058_RS02815at 89.253 kb on - strand, within HMPREF1058_RS02815at 89.259 kb on - strand, within HMPREF1058_RS02815at 89.286 kb on - strand, within HMPREF1058_RS02815at 89.317 kb on + strand, within HMPREF1058_RS02815at 89.328 kb on + strand, within HMPREF1058_RS02815at 89.328 kb on + strand, within HMPREF1058_RS02815at 89.332 kb on + strand, within HMPREF1058_RS02815at 89.333 kb on - strand, within HMPREF1058_RS02815at 89.420 kb on + strand, within HMPREF1058_RS02815at 89.421 kb on - strand, within HMPREF1058_RS02815at 89.466 kb on - strand, within HMPREF1058_RS02815

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C)
remove
84,212 - HMPREF1058_RS02825 0.40 -1.0
84,325 - HMPREF1058_RS02825 0.48 -1.6
84,390 + HMPREF1058_RS02825 0.52 -0.7
84,397 + HMPREF1058_RS02825 0.52 -2.2
84,461 - HMPREF1058_RS02825 0.57 -1.3
84,468 + HMPREF1058_RS02825 0.57 -2.0
84,468 + HMPREF1058_RS02825 0.57 -3.4
84,468 + HMPREF1058_RS02825 0.57 -1.1
84,469 - HMPREF1058_RS02825 0.57 -2.1
84,576 + HMPREF1058_RS02825 0.64 -0.8
84,676 - HMPREF1058_RS02825 0.70 -2.2
84,833 + HMPREF1058_RS02825 0.81 -2.6
84,834 - HMPREF1058_RS02825 0.81 -1.1
84,837 - HMPREF1058_RS02825 0.81 -3.3
84,839 + HMPREF1058_RS02825 0.81 -1.9
84,861 - HMPREF1058_RS02825 0.82 -1.8
84,861 - HMPREF1058_RS02825 0.82 -1.4
84,862 + HMPREF1058_RS02825 0.83 -1.3
84,864 + HMPREF1058_RS02825 0.83 -0.0
84,865 - HMPREF1058_RS02825 0.83 -1.3
84,865 - HMPREF1058_RS02825 0.83 -1.8
84,909 + HMPREF1058_RS02825 0.86 -1.8
84,909 + HMPREF1058_RS02825 0.86 -1.4
85,057 - -1.3
85,120 + +1.2
85,200 + -1.4
85,266 + -0.5
85,269 + -0.6
85,290 + -2.8
85,291 - -1.5
85,291 - -2.6
85,309 + -1.4
85,309 + -0.1
85,341 + -2.4
85,341 + +0.6
85,341 + -0.1
85,342 - -1.5
85,349 - -1.2
85,373 + +0.6
85,526 - HMPREF1058_RS02820 0.11 -0.4
85,545 + HMPREF1058_RS02820 0.12 -0.1
85,548 - HMPREF1058_RS02820 0.12 -1.4
85,804 - HMPREF1058_RS02820 0.20 -2.3
85,821 + HMPREF1058_RS02820 0.20 -0.1
85,867 - HMPREF1058_RS02820 0.22 +0.6
85,909 + HMPREF1058_RS02820 0.23 -2.6
85,909 + HMPREF1058_RS02820 0.23 +0.7
85,936 + HMPREF1058_RS02820 0.24 -2.1
85,985 - HMPREF1058_RS02820 0.25 -0.9
86,008 - HMPREF1058_RS02820 0.26 -1.2
86,012 - HMPREF1058_RS02820 0.26 -0.9
86,029 + HMPREF1058_RS02820 0.26 -0.5
86,030 - HMPREF1058_RS02820 0.26 -0.6
86,058 + HMPREF1058_RS02820 0.27 +0.0
86,058 + HMPREF1058_RS02820 0.27 -1.9
86,058 + HMPREF1058_RS02820 0.27 -1.5
86,082 + HMPREF1058_RS02820 0.28 -1.5
86,082 + HMPREF1058_RS02820 0.28 -1.6
86,083 - HMPREF1058_RS02820 0.28 -2.4
86,102 + HMPREF1058_RS02820 0.29 -0.6
86,105 + HMPREF1058_RS02820 0.29 +1.6
86,105 + HMPREF1058_RS02820 0.29 -0.6
86,116 + HMPREF1058_RS02820 0.29 -2.1
86,286 - HMPREF1058_RS02820 0.34 +1.6
86,411 + HMPREF1058_RS02820 0.38 -1.9
86,481 + HMPREF1058_RS02820 0.40 -1.5
86,482 - HMPREF1058_RS02820 0.40 -2.1
86,495 + HMPREF1058_RS02820 0.40 -0.8
86,496 - HMPREF1058_RS02820 0.40 -1.4
86,575 + HMPREF1058_RS02820 0.43 -1.1
86,576 - HMPREF1058_RS02820 0.43 -0.1
86,610 - HMPREF1058_RS02820 0.44 -2.9
86,617 + HMPREF1058_RS02820 0.44 -2.3
86,617 + HMPREF1058_RS02820 0.44 -0.4
86,618 - HMPREF1058_RS02820 0.44 -0.1
86,646 + HMPREF1058_RS02820 0.45 -0.9
86,647 - HMPREF1058_RS02820 0.45 -2.4
86,647 - HMPREF1058_RS02820 0.45 +1.2
86,649 - HMPREF1058_RS02820 0.45 -1.3
86,649 - HMPREF1058_RS02820 0.45 -1.0
86,670 + HMPREF1058_RS02820 0.45 -0.6
86,686 - HMPREF1058_RS02820 0.46 -1.6
86,716 + HMPREF1058_RS02820 0.47 -2.3
86,722 - HMPREF1058_RS02820 0.47 -1.7
86,787 + HMPREF1058_RS02820 0.49 -1.7
86,788 - HMPREF1058_RS02820 0.49 -1.1
86,804 + HMPREF1058_RS02820 0.49 -0.9
86,831 - HMPREF1058_RS02820 0.50 -1.4
86,972 + HMPREF1058_RS02820 0.55 -1.9
86,972 + HMPREF1058_RS02820 0.55 +1.1
87,022 - HMPREF1058_RS02820 0.56 +0.6
87,124 + HMPREF1058_RS02820 0.59 +0.4
87,135 + HMPREF1058_RS02820 0.59 -1.0
87,135 + HMPREF1058_RS02820 0.59 -0.8
87,136 - HMPREF1058_RS02820 0.59 -1.1
87,138 - HMPREF1058_RS02820 0.59 -1.0
87,159 + HMPREF1058_RS02820 0.60 -2.6
87,171 - HMPREF1058_RS02820 0.60 -1.2
87,171 - HMPREF1058_RS02820 0.60 -1.6
87,177 + HMPREF1058_RS02820 0.61 -2.7
87,211 + HMPREF1058_RS02820 0.62 -0.4
87,343 + HMPREF1058_RS02820 0.66 +0.1
87,373 + HMPREF1058_RS02820 0.66 +0.6
87,374 - HMPREF1058_RS02820 0.66 -1.9
87,375 + HMPREF1058_RS02820 0.67 -1.2
87,376 - HMPREF1058_RS02820 0.67 -0.7
87,407 - HMPREF1058_RS02820 0.67 -2.2
87,407 - HMPREF1058_RS02820 0.67 -1.3
87,439 - HMPREF1058_RS02820 0.68 -1.3
87,442 + HMPREF1058_RS02820 0.69 -1.7
87,454 + HMPREF1058_RS02820 0.69 -2.1
87,536 + HMPREF1058_RS02820 0.71 +0.1
87,537 - HMPREF1058_RS02820 0.71 -1.8
87,597 + HMPREF1058_RS02820 0.73 -0.3
87,598 - HMPREF1058_RS02820 0.73 -1.3
87,606 + HMPREF1058_RS02820 0.73 -3.8
87,615 + HMPREF1058_RS02820 0.74 -2.2
87,615 + HMPREF1058_RS02820 0.74 -1.5
87,617 + HMPREF1058_RS02820 0.74 -2.9
87,617 + HMPREF1058_RS02820 0.74 +0.1
87,617 + HMPREF1058_RS02820 0.74 -1.0
87,617 + HMPREF1058_RS02820 0.74 -0.8
87,617 + HMPREF1058_RS02820 0.74 -2.3
87,618 - HMPREF1058_RS02820 0.74 -1.5
87,635 + HMPREF1058_RS02820 0.74 +0.2
87,635 + HMPREF1058_RS02820 0.74 -1.2
87,636 - HMPREF1058_RS02820 0.74 -1.9
87,636 - HMPREF1058_RS02820 0.74 -0.7
87,660 + HMPREF1058_RS02820 0.75 -1.5
87,715 + HMPREF1058_RS02820 0.77 -1.1
87,716 - HMPREF1058_RS02820 0.77 -0.9
87,781 + HMPREF1058_RS02820 0.79 -2.3
87,876 + HMPREF1058_RS02820 0.81 -1.4
87,886 + HMPREF1058_RS02820 0.82 -1.9
88,000 + HMPREF1058_RS02820 0.85 -2.6
88,001 - HMPREF1058_RS02820 0.85 -2.4
88,002 + -1.1
88,137 + HMPREF1058_RS02820 0.89 -1.2
88,147 - HMPREF1058_RS02820 0.90 -1.2
88,155 + HMPREF1058_RS02820 0.90 -1.8
88,156 - HMPREF1058_RS02820 0.90 -1.3
88,255 - -1.5
88,258 + -2.5
88,272 - -1.1
88,338 + -1.0
88,343 - -0.3
88,470 - -0.6
88,470 - +1.5
88,633 - +2.6
88,694 + -3.2
88,695 - +3.7
88,729 + -1.2
88,730 - +3.2
88,771 + HMPREF1058_RS02815 0.13 -1.1
88,772 - HMPREF1058_RS02815 0.13 +1.8
88,936 - HMPREF1058_RS02815 0.31 +3.1
89,016 + HMPREF1058_RS02815 0.39 -0.8
89,056 + HMPREF1058_RS02815 0.43 -1.8
89,056 - HMPREF1058_RS02815 0.43 +2.0
89,089 + HMPREF1058_RS02815 0.47 -0.7
89,089 + HMPREF1058_RS02815 0.47 -1.9
89,133 + HMPREF1058_RS02815 0.52 -1.4
89,134 - HMPREF1058_RS02815 0.52 +1.5
89,232 - HMPREF1058_RS02815 0.62 +0.4
89,232 - HMPREF1058_RS02815 0.62 +0.2
89,232 - HMPREF1058_RS02815 0.62 -0.8
89,249 + HMPREF1058_RS02815 0.64 -0.5
89,253 - HMPREF1058_RS02815 0.64 -0.6
89,259 - HMPREF1058_RS02815 0.65 +1.5
89,286 - HMPREF1058_RS02815 0.68 -0.6
89,317 + HMPREF1058_RS02815 0.71 -3.0
89,328 + HMPREF1058_RS02815 0.72 -2.6
89,328 + HMPREF1058_RS02815 0.72 -2.7
89,332 + HMPREF1058_RS02815 0.73 -0.6
89,333 - HMPREF1058_RS02815 0.73 +1.2
89,420 + HMPREF1058_RS02815 0.82 -0.2
89,421 - HMPREF1058_RS02815 0.82 +0.3
89,466 - HMPREF1058_RS02815 0.87 -1.4

Or see this region's nucleotide sequence