Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02620 and HMPREF1058_RS02615 are separated by 12 nucleotides HMPREF1058_RS02615 and HMPREF1058_RS02610 are separated by 8 nucleotides
HMPREF1058_RS02620: HMPREF1058_RS02620 - [FeFe] hydrogenase H-cluster radical SAM maturase HydG, at 141,083 to 142,501
_RS02620
HMPREF1058_RS02615: HMPREF1058_RS02615 - [FeFe] hydrogenase H-cluster radical SAM maturase HydE, at 142,514 to 143,548
_RS02615
HMPREF1058_RS02610: HMPREF1058_RS02610 - 4Fe-4S dicluster domain-containing protein, at 143,557 to 145,023
_RS02610
Position (kb) 142
143
144 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 141.547 kb on + strand, within HMPREF1058_RS02620 at 141.553 kb on + strand, within HMPREF1058_RS02620 at 141.554 kb on - strand, within HMPREF1058_RS02620 at 141.554 kb on - strand, within HMPREF1058_RS02620 at 141.559 kb on + strand, within HMPREF1058_RS02620 at 141.609 kb on - strand, within HMPREF1058_RS02620 at 141.610 kb on + strand, within HMPREF1058_RS02620 at 141.685 kb on + strand, within HMPREF1058_RS02620 at 141.789 kb on - strand, within HMPREF1058_RS02620 at 141.837 kb on + strand, within HMPREF1058_RS02620 at 141.844 kb on - strand, within HMPREF1058_RS02620 at 141.844 kb on - strand, within HMPREF1058_RS02620 at 141.879 kb on + strand, within HMPREF1058_RS02620 at 141.914 kb on - strand, within HMPREF1058_RS02620 at 141.916 kb on - strand, within HMPREF1058_RS02620 at 141.916 kb on - strand, within HMPREF1058_RS02620 at 142.019 kb on - strand, within HMPREF1058_RS02620 at 142.020 kb on + strand, within HMPREF1058_RS02620 at 142.020 kb on + strand, within HMPREF1058_RS02620 at 142.020 kb on + strand, within HMPREF1058_RS02620 at 142.048 kb on - strand, within HMPREF1058_RS02620 at 142.054 kb on + strand at 142.054 kb on + strand, within HMPREF1058_RS02620 at 142.197 kb on + strand, within HMPREF1058_RS02620 at 142.247 kb on + strand, within HMPREF1058_RS02620 at 142.431 kb on + strand at 142.432 kb on - strand at 142.479 kb on - strand at 142.484 kb on - strand at 142.498 kb on - strand at 142.498 kb on - strand at 142.498 kb on - strand at 142.626 kb on + strand, within HMPREF1058_RS02615 at 142.627 kb on - strand, within HMPREF1058_RS02615 at 142.627 kb on - strand, within HMPREF1058_RS02615 at 142.677 kb on - strand, within HMPREF1058_RS02615 at 143.013 kb on - strand, within HMPREF1058_RS02615 at 143.041 kb on + strand, within HMPREF1058_RS02615 at 143.042 kb on - strand, within HMPREF1058_RS02615 at 143.448 kb on - strand at 143.451 kb on + strand at 143.451 kb on + strand at 143.526 kb on - strand at 143.558 kb on + strand at 143.561 kb on + strand at 143.644 kb on - strand at 143.738 kb on - strand, within HMPREF1058_RS02610 at 143.747 kb on - strand, within HMPREF1058_RS02610 at 144.015 kb on - strand, within HMPREF1058_RS02610 at 144.030 kb on + strand, within HMPREF1058_RS02610 at 144.041 kb on + strand, within HMPREF1058_RS02610 at 144.044 kb on + strand, within HMPREF1058_RS02610 at 144.044 kb on + strand, within HMPREF1058_RS02610 at 144.044 kb on + strand, within HMPREF1058_RS02610 at 144.044 kb on + strand, within HMPREF1058_RS02610 at 144.045 kb on - strand, within HMPREF1058_RS02610 at 144.045 kb on - strand, within HMPREF1058_RS02610 at 144.092 kb on + strand at 144.092 kb on + strand, within HMPREF1058_RS02610 at 144.092 kb on + strand, within HMPREF1058_RS02610 at 144.093 kb on - strand, within HMPREF1058_RS02610 at 144.224 kb on - strand, within HMPREF1058_RS02610 at 144.225 kb on + strand, within HMPREF1058_RS02610 at 144.258 kb on - strand, within HMPREF1058_RS02610 at 144.260 kb on - strand, within HMPREF1058_RS02610 at 144.260 kb on - strand at 144.260 kb on - strand, within HMPREF1058_RS02610 at 144.260 kb on - strand, within HMPREF1058_RS02610 at 144.405 kb on + strand, within HMPREF1058_RS02610 at 144.418 kb on - strand, within HMPREF1058_RS02610 at 144.424 kb on - strand, within HMPREF1058_RS02610 at 144.424 kb on - strand, within HMPREF1058_RS02610 at 144.442 kb on + strand, within HMPREF1058_RS02610 at 144.505 kb on - strand, within HMPREF1058_RS02610 at 144.506 kb on + strand, within HMPREF1058_RS02610 at 144.507 kb on - strand, within HMPREF1058_RS02610 at 144.544 kb on - strand, within HMPREF1058_RS02610
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 141,547 + HMPREF1058_RS02620 0.33 +0.3 141,553 + HMPREF1058_RS02620 0.33 -0.1 141,554 - HMPREF1058_RS02620 0.33 +1.0 141,554 - HMPREF1058_RS02620 0.33 +0.3 141,559 + HMPREF1058_RS02620 0.34 +3.3 141,609 - HMPREF1058_RS02620 0.37 +0.6 141,610 + HMPREF1058_RS02620 0.37 +0.6 141,685 + HMPREF1058_RS02620 0.42 +1.3 141,789 - HMPREF1058_RS02620 0.50 +1.2 141,837 + HMPREF1058_RS02620 0.53 -3.1 141,844 - HMPREF1058_RS02620 0.54 +1.1 141,844 - HMPREF1058_RS02620 0.54 -2.2 141,879 + HMPREF1058_RS02620 0.56 -0.9 141,914 - HMPREF1058_RS02620 0.59 +0.2 141,916 - HMPREF1058_RS02620 0.59 -0.3 141,916 - HMPREF1058_RS02620 0.59 +0.7 142,019 - HMPREF1058_RS02620 0.66 -0.3 142,020 + HMPREF1058_RS02620 0.66 -0.5 142,020 + HMPREF1058_RS02620 0.66 -0.9 142,020 + HMPREF1058_RS02620 0.66 -0.6 142,048 - HMPREF1058_RS02620 0.68 -0.2 142,054 + +1.2 142,054 + HMPREF1058_RS02620 0.68 -0.2 142,197 + HMPREF1058_RS02620 0.79 -0.7 142,247 + HMPREF1058_RS02620 0.82 +1.0 142,431 + -1.9 142,432 - -0.6 142,479 - +0.8 142,484 - +1.0 142,498 - -1.2 142,498 - -0.2 142,498 - -0.1 142,626 + HMPREF1058_RS02615 0.11 +1.0 142,627 - HMPREF1058_RS02615 0.11 +0.1 142,627 - HMPREF1058_RS02615 0.11 +1.1 142,677 - HMPREF1058_RS02615 0.16 +0.4 143,013 - HMPREF1058_RS02615 0.48 +0.7 143,041 + HMPREF1058_RS02615 0.51 -3.0 143,042 - HMPREF1058_RS02615 0.51 +0.6 143,448 - +0.9 143,451 + +0.0 143,451 + -0.5 143,526 - -0.9 143,558 + +0.1 143,561 + +0.7 143,644 - +0.5 143,738 - HMPREF1058_RS02610 0.12 +1.2 143,747 - HMPREF1058_RS02610 0.13 +0.6 144,015 - HMPREF1058_RS02610 0.31 +1.2 144,030 + HMPREF1058_RS02610 0.32 -1.0 144,041 + HMPREF1058_RS02610 0.33 +0.8 144,044 + HMPREF1058_RS02610 0.33 -0.0 144,044 + HMPREF1058_RS02610 0.33 +1.3 144,044 + HMPREF1058_RS02610 0.33 +0.8 144,044 + HMPREF1058_RS02610 0.33 -0.5 144,045 - HMPREF1058_RS02610 0.33 +1.0 144,045 - HMPREF1058_RS02610 0.33 +0.8 144,092 + +0.9 144,092 + HMPREF1058_RS02610 0.36 -0.9 144,092 + HMPREF1058_RS02610 0.36 -0.1 144,093 - HMPREF1058_RS02610 0.37 +0.9 144,224 - HMPREF1058_RS02610 0.45 +0.4 144,225 + HMPREF1058_RS02610 0.46 -0.4 144,258 - HMPREF1058_RS02610 0.48 +0.6 144,260 - HMPREF1058_RS02610 0.48 -0.0 144,260 - -1.1 144,260 - HMPREF1058_RS02610 0.48 +1.5 144,260 - HMPREF1058_RS02610 0.48 -0.3 144,405 + HMPREF1058_RS02610 0.58 -0.6 144,418 - HMPREF1058_RS02610 0.59 -1.5 144,424 - HMPREF1058_RS02610 0.59 +0.6 144,424 - HMPREF1058_RS02610 0.59 +1.1 144,442 + HMPREF1058_RS02610 0.60 -1.1 144,505 - HMPREF1058_RS02610 0.65 +2.1 144,506 + HMPREF1058_RS02610 0.65 -1.6 144,507 - HMPREF1058_RS02610 0.65 -1.5 144,544 - HMPREF1058_RS02610 0.67 +2.1
Or see this region's nucleotide sequence