Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02495 and HMPREF1058_RS02490 are separated by 41 nucleotides HMPREF1058_RS02490 and HMPREF1058_RS02485 are separated by 35 nucleotides
HMPREF1058_RS02495: HMPREF1058_RS02495 - acyl-CoA dehydrogenase family protein, at 169,412 to 171,118
_RS02495
HMPREF1058_RS02490: HMPREF1058_RS02490 - four helix bundle protein, at 171,160 to 171,540
_RS02490
HMPREF1058_RS02485: HMPREF1058_RS02485 - electron transfer flavoprotein subunit alpha/FixB family protein, at 171,576 to 172,595
_RS02485
Position (kb) 171
172 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 170.165 kb on - strand, within HMPREF1058_RS02495 at 170.268 kb on + strand, within HMPREF1058_RS02495 at 170.362 kb on + strand at 170.379 kb on - strand, within HMPREF1058_RS02495 at 170.384 kb on + strand, within HMPREF1058_RS02495 at 170.407 kb on - strand, within HMPREF1058_RS02495 at 170.407 kb on - strand, within HMPREF1058_RS02495 at 170.462 kb on + strand, within HMPREF1058_RS02495 at 170.670 kb on + strand, within HMPREF1058_RS02495 at 170.671 kb on - strand, within HMPREF1058_RS02495 at 170.989 kb on - strand at 171.020 kb on - strand at 171.096 kb on - strand at 171.129 kb on - strand at 171.132 kb on + strand at 171.132 kb on + strand at 171.132 kb on + strand at 171.145 kb on - strand at 171.145 kb on - strand at 171.151 kb on + strand at 171.161 kb on + strand at 171.161 kb on + strand at 171.161 kb on + strand at 171.162 kb on - strand at 171.239 kb on - strand, within HMPREF1058_RS02490 at 171.239 kb on - strand, within HMPREF1058_RS02490 at 171.558 kb on - strand at 171.561 kb on + strand at 171.562 kb on - strand at 171.562 kb on - strand at 171.562 kb on - strand at 171.562 kb on - strand at 171.596 kb on - strand at 171.598 kb on + strand at 171.642 kb on + strand at 171.643 kb on - strand at 171.997 kb on + strand, within HMPREF1058_RS02485 at 171.997 kb on + strand, within HMPREF1058_RS02485 at 171.997 kb on + strand, within HMPREF1058_RS02485 at 171.997 kb on + strand, within HMPREF1058_RS02485 at 171.998 kb on - strand, within HMPREF1058_RS02485 at 172.172 kb on - strand, within HMPREF1058_RS02485 at 172.273 kb on - strand, within HMPREF1058_RS02485 at 172.380 kb on - strand, within HMPREF1058_RS02485 at 172.380 kb on - strand, within HMPREF1058_RS02485 at 172.382 kb on - strand at 172.407 kb on + strand, within HMPREF1058_RS02485 at 172.437 kb on + strand, within HMPREF1058_RS02485 at 172.510 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 170,165 - HMPREF1058_RS02495 0.44 +0.3 170,268 + HMPREF1058_RS02495 0.50 -0.4 170,362 + +0.6 170,379 - HMPREF1058_RS02495 0.57 +0.2 170,384 + HMPREF1058_RS02495 0.57 +2.2 170,407 - HMPREF1058_RS02495 0.58 +1.6 170,407 - HMPREF1058_RS02495 0.58 -0.4 170,462 + HMPREF1058_RS02495 0.62 -1.5 170,670 + HMPREF1058_RS02495 0.74 +0.1 170,671 - HMPREF1058_RS02495 0.74 -2.2 170,989 - +1.9 171,020 - +0.4 171,096 - +3.0 171,129 - +1.4 171,132 + -0.8 171,132 + +3.2 171,132 + +0.6 171,145 - +1.2 171,145 - +3.0 171,151 + +1.1 171,161 + +3.8 171,161 + +0.2 171,161 + +0.6 171,162 - +2.1 171,239 - HMPREF1058_RS02490 0.21 +1.2 171,239 - HMPREF1058_RS02490 0.21 -0.2 171,558 - +1.3 171,561 + -0.9 171,562 - +2.0 171,562 - +0.9 171,562 - +3.0 171,562 - +1.3 171,596 - +0.8 171,598 + -0.4 171,642 + +1.7 171,643 - -0.5 171,997 + HMPREF1058_RS02485 0.41 -0.1 171,997 + HMPREF1058_RS02485 0.41 +0.2 171,997 + HMPREF1058_RS02485 0.41 +0.1 171,997 + HMPREF1058_RS02485 0.41 +0.0 171,998 - HMPREF1058_RS02485 0.41 -0.1 172,172 - HMPREF1058_RS02485 0.58 +0.8 172,273 - HMPREF1058_RS02485 0.68 +0.2 172,380 - HMPREF1058_RS02485 0.79 +0.7 172,380 - HMPREF1058_RS02485 0.79 +0.6 172,382 - +0.6 172,407 + HMPREF1058_RS02485 0.81 +2.0 172,437 + HMPREF1058_RS02485 0.84 +0.0 172,510 - +2.3
Or see this region's nucleotide sequence