Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02485 and HMPREF1058_RS02480 are separated by 5 nucleotides HMPREF1058_RS02480 and HMPREF1058_RS02475 are separated by 366 nucleotides HMPREF1058_RS02475 and HMPREF1058_RS02470 are separated by 78 nucleotides
HMPREF1058_RS02485: HMPREF1058_RS02485 - electron transfer flavoprotein subunit alpha/FixB family protein, at 171,576 to 172,595
_RS02485
HMPREF1058_RS02480: HMPREF1058_RS02480 - electron transfer flavoprotein subunit beta/FixA family protein, at 172,601 to 173,494
_RS02480
HMPREF1058_RS02475: HMPREF1058_RS02475 - hypothetical protein, at 173,861 to 174,119
_RS02475
HMPREF1058_RS02470: HMPREF1058_RS02470 - hypothetical protein, at 174,198 to 175,262
_RS02470
Position (kb) 172
173
174 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 171.642 kb on + strand at 171.643 kb on - strand at 171.997 kb on + strand, within HMPREF1058_RS02485 at 171.997 kb on + strand, within HMPREF1058_RS02485 at 171.997 kb on + strand, within HMPREF1058_RS02485 at 171.997 kb on + strand, within HMPREF1058_RS02485 at 171.998 kb on - strand, within HMPREF1058_RS02485 at 172.172 kb on - strand, within HMPREF1058_RS02485 at 172.273 kb on - strand, within HMPREF1058_RS02485 at 172.380 kb on - strand, within HMPREF1058_RS02485 at 172.380 kb on - strand, within HMPREF1058_RS02485 at 172.382 kb on - strand at 172.407 kb on + strand, within HMPREF1058_RS02485 at 172.437 kb on + strand, within HMPREF1058_RS02485 at 172.510 kb on - strand at 172.578 kb on + strand at 172.578 kb on + strand at 172.584 kb on + strand at 172.608 kb on - strand at 172.612 kb on + strand at 172.613 kb on - strand at 172.764 kb on - strand, within HMPREF1058_RS02480 at 172.814 kb on + strand, within HMPREF1058_RS02480 at 172.814 kb on + strand, within HMPREF1058_RS02480 at 172.814 kb on + strand, within HMPREF1058_RS02480 at 172.815 kb on - strand, within HMPREF1058_RS02480 at 173.057 kb on - strand, within HMPREF1058_RS02480 at 173.168 kb on - strand, within HMPREF1058_RS02480 at 173.235 kb on + strand, within HMPREF1058_RS02480 at 173.236 kb on - strand, within HMPREF1058_RS02480 at 173.238 kb on - strand, within HMPREF1058_RS02480 at 173.475 kb on - strand at 173.477 kb on + strand at 173.496 kb on + strand at 173.497 kb on - strand at 173.507 kb on - strand at 173.516 kb on + strand at 173.517 kb on - strand at 173.517 kb on - strand at 173.517 kb on - strand at 173.580 kb on + strand at 173.634 kb on - strand at 173.643 kb on - strand at 173.655 kb on - strand at 173.710 kb on + strand at 173.807 kb on + strand at 173.837 kb on - strand at 173.925 kb on - strand, within HMPREF1058_RS02475 at 173.959 kb on - strand, within HMPREF1058_RS02475 at 174.004 kb on + strand, within HMPREF1058_RS02475 at 174.004 kb on + strand, within HMPREF1058_RS02475 at 174.005 kb on - strand, within HMPREF1058_RS02475 at 174.009 kb on - strand, within HMPREF1058_RS02475 at 174.009 kb on - strand, within HMPREF1058_RS02475 at 174.043 kb on - strand, within HMPREF1058_RS02475 at 174.062 kb on + strand, within HMPREF1058_RS02475 at 174.129 kb on + strand at 174.130 kb on - strand at 174.157 kb on - strand at 174.159 kb on + strand at 174.198 kb on - strand at 174.261 kb on - strand at 174.313 kb on - strand, within HMPREF1058_RS02470 at 174.313 kb on - strand, within HMPREF1058_RS02470 at 174.313 kb on - strand at 174.330 kb on - strand, within HMPREF1058_RS02470 at 174.393 kb on - strand, within HMPREF1058_RS02470 at 174.411 kb on - strand, within HMPREF1058_RS02470 at 174.453 kb on - strand, within HMPREF1058_RS02470
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 171,642 + +1.7 171,643 - -0.5 171,997 + HMPREF1058_RS02485 0.41 -0.1 171,997 + HMPREF1058_RS02485 0.41 +0.2 171,997 + HMPREF1058_RS02485 0.41 +0.1 171,997 + HMPREF1058_RS02485 0.41 +0.0 171,998 - HMPREF1058_RS02485 0.41 -0.1 172,172 - HMPREF1058_RS02485 0.58 +0.8 172,273 - HMPREF1058_RS02485 0.68 +0.2 172,380 - HMPREF1058_RS02485 0.79 +0.7 172,380 - HMPREF1058_RS02485 0.79 +0.6 172,382 - +0.6 172,407 + HMPREF1058_RS02485 0.81 +2.0 172,437 + HMPREF1058_RS02485 0.84 +0.0 172,510 - +2.3 172,578 + +1.0 172,578 + +2.8 172,584 + -0.5 172,608 - +2.1 172,612 + +0.9 172,613 - -0.0 172,764 - HMPREF1058_RS02480 0.18 +1.1 172,814 + HMPREF1058_RS02480 0.24 +0.8 172,814 + HMPREF1058_RS02480 0.24 +1.8 172,814 + HMPREF1058_RS02480 0.24 -2.3 172,815 - HMPREF1058_RS02480 0.24 +1.9 173,057 - HMPREF1058_RS02480 0.51 +0.2 173,168 - HMPREF1058_RS02480 0.63 +0.2 173,235 + HMPREF1058_RS02480 0.71 +0.6 173,236 - HMPREF1058_RS02480 0.71 +4.4 173,238 - HMPREF1058_RS02480 0.71 +0.2 173,475 - -2.7 173,477 + +1.0 173,496 + +1.2 173,497 - -1.1 173,507 - +1.6 173,516 + +0.8 173,517 - +0.6 173,517 - +0.1 173,517 - -0.6 173,580 + -1.2 173,634 - -0.6 173,643 - +0.8 173,655 - -0.5 173,710 + -0.6 173,807 + -2.0 173,837 - -0.4 173,925 - HMPREF1058_RS02475 0.25 +0.1 173,959 - HMPREF1058_RS02475 0.38 -2.6 174,004 + HMPREF1058_RS02475 0.55 -1.9 174,004 + HMPREF1058_RS02475 0.55 +0.4 174,005 - HMPREF1058_RS02475 0.56 +0.5 174,009 - HMPREF1058_RS02475 0.57 -0.0 174,009 - HMPREF1058_RS02475 0.57 -1.4 174,043 - HMPREF1058_RS02475 0.70 -0.2 174,062 + HMPREF1058_RS02475 0.78 +0.1 174,129 + -1.1 174,130 - -0.4 174,157 - +3.2 174,159 + -1.1 174,198 - -0.4 174,261 - +2.6 174,313 - HMPREF1058_RS02470 0.11 +1.4 174,313 - HMPREF1058_RS02470 0.11 +0.6 174,313 - -0.9 174,330 - HMPREF1058_RS02470 0.12 -0.3 174,393 - HMPREF1058_RS02470 0.18 -0.6 174,411 - HMPREF1058_RS02470 0.20 -0.0 174,453 - HMPREF1058_RS02470 0.24 -0.2
Or see this region's nucleotide sequence