Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02160 and HMPREF1058_RS02155 are separated by 27 nucleotides HMPREF1058_RS02155 and HMPREF1058_RS02150 overlap by 4 nucleotides HMPREF1058_RS02150 and HMPREF1058_RS02145 overlap by 8 nucleotides HMPREF1058_RS02145 and HMPREF1058_RS02140 are separated by 161 nucleotides
HMPREF1058_RS02160: HMPREF1058_RS02160 - hypothetical protein, at 268,188 to 269,972
_RS02160
HMPREF1058_RS02155: HMPREF1058_RS02155 - ParB-like nuclease domain-containing protein, at 270,000 to 270,512
_RS02155
HMPREF1058_RS02150: HMPREF1058_RS02150 - DUF3440 domain-containing protein, at 270,509 to 271,810
_RS02150
HMPREF1058_RS02145: HMPREF1058_RS02145 - hypothetical protein, at 271,803 to 272,195
_RS02145
HMPREF1058_RS02140: HMPREF1058_RS02140 - NADP-specific glutamate dehydrogenase, at 272,357 to 273,694
_RS02140
Position (kb) 270
271
272 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 269.607 kb on + strand, within HMPREF1058_RS02160 at 269.607 kb on + strand, within HMPREF1058_RS02160 at 269.607 kb on + strand, within HMPREF1058_RS02160 at 269.607 kb on + strand, within HMPREF1058_RS02160 at 269.608 kb on - strand, within HMPREF1058_RS02160 at 269.608 kb on - strand, within HMPREF1058_RS02160 at 269.630 kb on + strand, within HMPREF1058_RS02160 at 269.650 kb on + strand, within HMPREF1058_RS02160 at 269.676 kb on + strand, within HMPREF1058_RS02160 at 269.750 kb on + strand, within HMPREF1058_RS02160 at 269.751 kb on - strand, within HMPREF1058_RS02160 at 269.752 kb on + strand, within HMPREF1058_RS02160 at 269.753 kb on - strand, within HMPREF1058_RS02160 at 269.753 kb on - strand, within HMPREF1058_RS02160 at 269.861 kb on - strand at 269.861 kb on - strand at 269.865 kb on - strand at 269.865 kb on - strand at 269.865 kb on - strand at 269.901 kb on - strand at 269.950 kb on - strand at 269.950 kb on - strand at 269.953 kb on - strand at 269.956 kb on - strand at 269.966 kb on - strand at 269.984 kb on - strand at 269.984 kb on - strand at 270.070 kb on - strand, within HMPREF1058_RS02155 at 270.095 kb on + strand, within HMPREF1058_RS02155 at 270.153 kb on + strand, within HMPREF1058_RS02155 at 270.153 kb on + strand, within HMPREF1058_RS02155 at 270.253 kb on - strand, within HMPREF1058_RS02155 at 270.328 kb on + strand, within HMPREF1058_RS02155 at 270.328 kb on + strand, within HMPREF1058_RS02155 at 270.328 kb on + strand, within HMPREF1058_RS02155 at 270.329 kb on - strand, within HMPREF1058_RS02155 at 270.330 kb on + strand, within HMPREF1058_RS02155 at 270.330 kb on + strand, within HMPREF1058_RS02155 at 270.331 kb on - strand, within HMPREF1058_RS02155 at 270.347 kb on + strand, within HMPREF1058_RS02155 at 270.352 kb on + strand, within HMPREF1058_RS02155 at 270.357 kb on + strand, within HMPREF1058_RS02155 at 270.369 kb on - strand, within HMPREF1058_RS02155 at 270.371 kb on + strand, within HMPREF1058_RS02155 at 270.372 kb on - strand, within HMPREF1058_RS02155 at 270.372 kb on - strand, within HMPREF1058_RS02155 at 270.437 kb on + strand, within HMPREF1058_RS02155 at 270.438 kb on - strand, within HMPREF1058_RS02155 at 270.484 kb on + strand at 270.485 kb on - strand at 270.529 kb on - strand at 270.593 kb on - strand at 270.596 kb on + strand at 270.597 kb on - strand at 270.597 kb on - strand at 270.628 kb on + strand at 270.628 kb on + strand at 270.634 kb on + strand at 270.636 kb on + strand at 270.668 kb on + strand, within HMPREF1058_RS02150 at 270.668 kb on + strand, within HMPREF1058_RS02150 at 270.677 kb on + strand, within HMPREF1058_RS02150 at 270.731 kb on + strand, within HMPREF1058_RS02150 at 270.767 kb on + strand, within HMPREF1058_RS02150 at 270.767 kb on + strand, within HMPREF1058_RS02150 at 270.869 kb on + strand, within HMPREF1058_RS02150 at 270.880 kb on - strand, within HMPREF1058_RS02150 at 270.883 kb on + strand, within HMPREF1058_RS02150 at 270.883 kb on + strand, within HMPREF1058_RS02150 at 270.883 kb on + strand, within HMPREF1058_RS02150 at 270.884 kb on - strand, within HMPREF1058_RS02150 at 270.885 kb on + strand, within HMPREF1058_RS02150 at 270.900 kb on + strand, within HMPREF1058_RS02150 at 270.901 kb on - strand, within HMPREF1058_RS02150 at 270.986 kb on + strand, within HMPREF1058_RS02150 at 271.006 kb on + strand, within HMPREF1058_RS02150 at 271.023 kb on + strand, within HMPREF1058_RS02150 at 271.025 kb on + strand, within HMPREF1058_RS02150 at 271.104 kb on + strand, within HMPREF1058_RS02150 at 271.146 kb on + strand, within HMPREF1058_RS02150 at 271.147 kb on - strand, within HMPREF1058_RS02150 at 271.157 kb on + strand, within HMPREF1058_RS02150 at 271.158 kb on - strand, within HMPREF1058_RS02150 at 271.159 kb on + strand, within HMPREF1058_RS02150 at 271.159 kb on + strand, within HMPREF1058_RS02150 at 271.180 kb on - strand, within HMPREF1058_RS02150 at 271.184 kb on - strand, within HMPREF1058_RS02150 at 271.268 kb on - strand, within HMPREF1058_RS02150 at 271.268 kb on - strand, within HMPREF1058_RS02150 at 271.399 kb on - strand, within HMPREF1058_RS02150 at 271.463 kb on - strand, within HMPREF1058_RS02150 at 271.486 kb on - strand, within HMPREF1058_RS02150 at 271.498 kb on + strand, within HMPREF1058_RS02150 at 271.551 kb on - strand, within HMPREF1058_RS02150 at 271.551 kb on - strand, within HMPREF1058_RS02150 at 271.585 kb on - strand, within HMPREF1058_RS02150 at 271.614 kb on + strand, within HMPREF1058_RS02150 at 271.626 kb on + strand, within HMPREF1058_RS02150 at 271.627 kb on - strand, within HMPREF1058_RS02150 at 271.629 kb on - strand, within HMPREF1058_RS02150 at 271.629 kb on - strand, within HMPREF1058_RS02150 at 271.666 kb on - strand, within HMPREF1058_RS02150 at 271.672 kb on + strand, within HMPREF1058_RS02150 at 271.677 kb on - strand, within HMPREF1058_RS02150 at 271.723 kb on - strand at 271.726 kb on + strand at 271.793 kb on - strand at 271.886 kb on + strand, within HMPREF1058_RS02145 at 271.916 kb on - strand, within HMPREF1058_RS02145 at 271.917 kb on + strand, within HMPREF1058_RS02145 at 271.984 kb on + strand, within HMPREF1058_RS02145 at 271.985 kb on - strand, within HMPREF1058_RS02145 at 271.985 kb on - strand, within HMPREF1058_RS02145 at 271.988 kb on - strand, within HMPREF1058_RS02145 at 271.988 kb on - strand, within HMPREF1058_RS02145 at 272.065 kb on + strand, within HMPREF1058_RS02145 at 272.157 kb on + strand at 272.179 kb on - strand at 272.200 kb on + strand at 272.237 kb on + strand at 272.253 kb on + strand at 272.306 kb on - strand at 272.306 kb on - strand at 272.319 kb on - strand at 272.347 kb on + strand at 272.347 kb on + strand at 272.390 kb on + strand at 272.428 kb on - strand at 272.435 kb on - strand at 272.435 kb on - strand at 272.457 kb on + strand at 272.489 kb on - strand at 272.489 kb on - strand at 272.498 kb on + strand, within HMPREF1058_RS02140 at 272.503 kb on + strand, within HMPREF1058_RS02140 at 272.510 kb on + strand, within HMPREF1058_RS02140 at 272.569 kb on + strand, within HMPREF1058_RS02140 at 272.570 kb on - strand, within HMPREF1058_RS02140 at 272.573 kb on + strand, within HMPREF1058_RS02140 at 272.607 kb on + strand, within HMPREF1058_RS02140 at 272.608 kb on - strand, within HMPREF1058_RS02140 at 272.608 kb on - strand, within HMPREF1058_RS02140 at 272.660 kb on - strand, within HMPREF1058_RS02140 at 272.704 kb on + strand, within HMPREF1058_RS02140 at 272.724 kb on - strand, within HMPREF1058_RS02140 at 272.756 kb on - strand, within HMPREF1058_RS02140 at 272.756 kb on - strand, within HMPREF1058_RS02140 at 272.760 kb on - strand, within HMPREF1058_RS02140 at 272.760 kb on - strand, within HMPREF1058_RS02140 at 272.765 kb on - strand, within HMPREF1058_RS02140 at 272.803 kb on + strand, within HMPREF1058_RS02140
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 269,607 + HMPREF1058_RS02160 0.79 -2.2 269,607 + HMPREF1058_RS02160 0.79 -1.5 269,607 + HMPREF1058_RS02160 0.79 -0.0 269,607 + HMPREF1058_RS02160 0.79 -1.1 269,608 - HMPREF1058_RS02160 0.80 +0.1 269,608 - HMPREF1058_RS02160 0.80 +0.4 269,630 + HMPREF1058_RS02160 0.81 -0.5 269,650 + HMPREF1058_RS02160 0.82 -0.1 269,676 + HMPREF1058_RS02160 0.83 -0.4 269,750 + HMPREF1058_RS02160 0.88 -0.3 269,751 - HMPREF1058_RS02160 0.88 +0.2 269,752 + HMPREF1058_RS02160 0.88 -0.3 269,753 - HMPREF1058_RS02160 0.88 +0.3 269,753 - HMPREF1058_RS02160 0.88 -0.4 269,861 - +0.4 269,861 - +0.5 269,865 - +0.5 269,865 - -0.2 269,865 - +1.1 269,901 - +0.7 269,950 - +0.3 269,950 - +0.2 269,953 - +0.7 269,956 - +0.0 269,966 - +0.2 269,984 - +1.6 269,984 - +0.3 270,070 - HMPREF1058_RS02155 0.14 +1.9 270,095 + HMPREF1058_RS02155 0.19 +1.2 270,153 + HMPREF1058_RS02155 0.30 +3.2 270,153 + HMPREF1058_RS02155 0.30 +1.5 270,253 - HMPREF1058_RS02155 0.49 +3.8 270,328 + HMPREF1058_RS02155 0.64 +1.9 270,328 + HMPREF1058_RS02155 0.64 +1.7 270,328 + HMPREF1058_RS02155 0.64 +0.1 270,329 - HMPREF1058_RS02155 0.64 +3.3 270,330 + HMPREF1058_RS02155 0.64 +2.7 270,330 + HMPREF1058_RS02155 0.64 +4.1 270,331 - HMPREF1058_RS02155 0.65 +2.2 270,347 + HMPREF1058_RS02155 0.68 +2.7 270,352 + HMPREF1058_RS02155 0.69 +2.4 270,357 + HMPREF1058_RS02155 0.70 +1.2 270,369 - HMPREF1058_RS02155 0.72 +2.8 270,371 + HMPREF1058_RS02155 0.72 +1.5 270,372 - HMPREF1058_RS02155 0.73 +3.2 270,372 - HMPREF1058_RS02155 0.73 +3.6 270,437 + HMPREF1058_RS02155 0.85 +2.5 270,438 - HMPREF1058_RS02155 0.85 +3.2 270,484 + +0.4 270,485 - +2.2 270,529 - +2.2 270,593 - +3.7 270,596 + +0.5 270,597 - +3.6 270,597 - +2.1 270,628 + +2.0 270,628 + -0.4 270,634 + +0.9 270,636 + +1.5 270,668 + HMPREF1058_RS02150 0.12 +2.2 270,668 + HMPREF1058_RS02150 0.12 +1.7 270,677 + HMPREF1058_RS02150 0.13 +2.4 270,731 + HMPREF1058_RS02150 0.17 +3.0 270,767 + HMPREF1058_RS02150 0.20 +3.0 270,767 + HMPREF1058_RS02150 0.20 +2.2 270,869 + HMPREF1058_RS02150 0.28 +2.1 270,880 - HMPREF1058_RS02150 0.28 +3.3 270,883 + HMPREF1058_RS02150 0.29 +2.0 270,883 + HMPREF1058_RS02150 0.29 -0.8 270,883 + HMPREF1058_RS02150 0.29 +2.0 270,884 - HMPREF1058_RS02150 0.29 +4.4 270,885 + HMPREF1058_RS02150 0.29 +3.3 270,900 + HMPREF1058_RS02150 0.30 +3.0 270,901 - HMPREF1058_RS02150 0.30 +3.5 270,986 + HMPREF1058_RS02150 0.37 +0.7 271,006 + HMPREF1058_RS02150 0.38 +2.3 271,023 + HMPREF1058_RS02150 0.39 +2.6 271,025 + HMPREF1058_RS02150 0.40 +2.0 271,104 + HMPREF1058_RS02150 0.46 +3.1 271,146 + HMPREF1058_RS02150 0.49 +0.8 271,147 - HMPREF1058_RS02150 0.49 +3.5 271,157 + HMPREF1058_RS02150 0.50 +1.1 271,158 - HMPREF1058_RS02150 0.50 +3.3 271,159 + HMPREF1058_RS02150 0.50 +2.3 271,159 + HMPREF1058_RS02150 0.50 +1.6 271,180 - HMPREF1058_RS02150 0.52 +3.0 271,184 - HMPREF1058_RS02150 0.52 +2.6 271,268 - HMPREF1058_RS02150 0.58 +0.2 271,268 - HMPREF1058_RS02150 0.58 +2.5 271,399 - HMPREF1058_RS02150 0.68 +3.2 271,463 - HMPREF1058_RS02150 0.73 +2.6 271,486 - HMPREF1058_RS02150 0.75 +3.1 271,498 + HMPREF1058_RS02150 0.76 +2.7 271,551 - HMPREF1058_RS02150 0.80 +3.6 271,551 - HMPREF1058_RS02150 0.80 +1.9 271,585 - HMPREF1058_RS02150 0.83 +2.4 271,614 + HMPREF1058_RS02150 0.85 +2.8 271,626 + HMPREF1058_RS02150 0.86 +2.9 271,627 - HMPREF1058_RS02150 0.86 +5.3 271,629 - HMPREF1058_RS02150 0.86 +2.6 271,629 - HMPREF1058_RS02150 0.86 +3.2 271,666 - HMPREF1058_RS02150 0.89 +2.7 271,672 + HMPREF1058_RS02150 0.89 +2.9 271,677 - HMPREF1058_RS02150 0.90 +2.9 271,723 - +2.0 271,726 + +1.4 271,793 - +2.5 271,886 + HMPREF1058_RS02145 0.21 +1.9 271,916 - HMPREF1058_RS02145 0.29 +1.5 271,917 + HMPREF1058_RS02145 0.29 +3.4 271,984 + HMPREF1058_RS02145 0.46 +2.0 271,985 - HMPREF1058_RS02145 0.46 +1.9 271,985 - HMPREF1058_RS02145 0.46 +1.3 271,988 - HMPREF1058_RS02145 0.47 +1.1 271,988 - HMPREF1058_RS02145 0.47 +3.7 272,065 + HMPREF1058_RS02145 0.67 +1.7 272,157 + +1.7 272,179 - +0.8 272,200 + +1.9 272,237 + +3.0 272,253 + +1.2 272,306 - +1.5 272,306 - +1.4 272,319 - +0.3 272,347 + -0.2 272,347 + +0.4 272,390 + -2.2 272,428 - +0.1 272,435 - -1.4 272,435 - +1.4 272,457 + -2.0 272,489 - -0.6 272,489 - -0.2 272,498 + HMPREF1058_RS02140 0.11 -1.5 272,503 + HMPREF1058_RS02140 0.11 +0.2 272,510 + HMPREF1058_RS02140 0.11 -0.5 272,569 + HMPREF1058_RS02140 0.16 -1.9 272,570 - HMPREF1058_RS02140 0.16 +0.4 272,573 + HMPREF1058_RS02140 0.16 -0.6 272,607 + HMPREF1058_RS02140 0.19 -2.9 272,608 - HMPREF1058_RS02140 0.19 -0.9 272,608 - HMPREF1058_RS02140 0.19 -2.9 272,660 - HMPREF1058_RS02140 0.23 -1.0 272,704 + HMPREF1058_RS02140 0.26 +0.8 272,724 - HMPREF1058_RS02140 0.27 -1.8 272,756 - HMPREF1058_RS02140 0.30 -1.0 272,756 - HMPREF1058_RS02140 0.30 +1.5 272,760 - HMPREF1058_RS02140 0.30 -0.6 272,760 - HMPREF1058_RS02140 0.30 -1.7 272,765 - HMPREF1058_RS02140 0.30 +0.4 272,803 + HMPREF1058_RS02140 0.33 -1.4
Or see this region's nucleotide sequence