Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02145

Experiment: Galactan from Potato 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02150 and HMPREF1058_RS02145 overlap by 8 nucleotidesHMPREF1058_RS02145 and HMPREF1058_RS02140 are separated by 161 nucleotides HMPREF1058_RS02150: HMPREF1058_RS02150 - DUF3440 domain-containing protein, at 270,509 to 271,810 _RS02150 HMPREF1058_RS02145: HMPREF1058_RS02145 - hypothetical protein, at 271,803 to 272,195 _RS02145 HMPREF1058_RS02140: HMPREF1058_RS02140 - NADP-specific glutamate dehydrogenase, at 272,357 to 273,694 _RS02140 Position (kb) 271 272 273Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 270.869 kb on + strand, within HMPREF1058_RS02150at 270.880 kb on - strand, within HMPREF1058_RS02150at 270.883 kb on + strand, within HMPREF1058_RS02150at 270.883 kb on + strand, within HMPREF1058_RS02150at 270.883 kb on + strand, within HMPREF1058_RS02150at 270.884 kb on - strand, within HMPREF1058_RS02150at 270.885 kb on + strand, within HMPREF1058_RS02150at 270.900 kb on + strand, within HMPREF1058_RS02150at 270.901 kb on - strand, within HMPREF1058_RS02150at 270.986 kb on + strand, within HMPREF1058_RS02150at 271.006 kb on + strand, within HMPREF1058_RS02150at 271.023 kb on + strand, within HMPREF1058_RS02150at 271.025 kb on + strand, within HMPREF1058_RS02150at 271.104 kb on + strand, within HMPREF1058_RS02150at 271.146 kb on + strand, within HMPREF1058_RS02150at 271.147 kb on - strand, within HMPREF1058_RS02150at 271.157 kb on + strand, within HMPREF1058_RS02150at 271.158 kb on - strand, within HMPREF1058_RS02150at 271.159 kb on + strand, within HMPREF1058_RS02150at 271.159 kb on + strand, within HMPREF1058_RS02150at 271.180 kb on - strand, within HMPREF1058_RS02150at 271.184 kb on - strand, within HMPREF1058_RS02150at 271.268 kb on - strand, within HMPREF1058_RS02150at 271.268 kb on - strand, within HMPREF1058_RS02150at 271.399 kb on - strand, within HMPREF1058_RS02150at 271.463 kb on - strand, within HMPREF1058_RS02150at 271.486 kb on - strand, within HMPREF1058_RS02150at 271.498 kb on + strand, within HMPREF1058_RS02150at 271.551 kb on - strand, within HMPREF1058_RS02150at 271.551 kb on - strand, within HMPREF1058_RS02150at 271.585 kb on - strand, within HMPREF1058_RS02150at 271.614 kb on + strand, within HMPREF1058_RS02150at 271.626 kb on + strand, within HMPREF1058_RS02150at 271.627 kb on - strand, within HMPREF1058_RS02150at 271.629 kb on - strand, within HMPREF1058_RS02150at 271.629 kb on - strand, within HMPREF1058_RS02150at 271.666 kb on - strand, within HMPREF1058_RS02150at 271.672 kb on + strand, within HMPREF1058_RS02150at 271.677 kb on - strand, within HMPREF1058_RS02150at 271.723 kb on - strandat 271.726 kb on + strandat 271.793 kb on - strandat 271.886 kb on + strand, within HMPREF1058_RS02145at 271.916 kb on - strand, within HMPREF1058_RS02145at 271.917 kb on + strand, within HMPREF1058_RS02145at 271.984 kb on + strand, within HMPREF1058_RS02145at 271.985 kb on - strand, within HMPREF1058_RS02145at 271.985 kb on - strand, within HMPREF1058_RS02145at 271.988 kb on - strand, within HMPREF1058_RS02145at 271.988 kb on - strand, within HMPREF1058_RS02145at 272.065 kb on + strand, within HMPREF1058_RS02145at 272.157 kb on + strandat 272.179 kb on - strandat 272.200 kb on + strandat 272.237 kb on + strandat 272.253 kb on + strandat 272.306 kb on - strandat 272.306 kb on - strandat 272.319 kb on - strandat 272.347 kb on + strandat 272.347 kb on + strandat 272.390 kb on + strandat 272.428 kb on - strandat 272.435 kb on - strandat 272.435 kb on - strandat 272.457 kb on + strandat 272.489 kb on - strandat 272.489 kb on - strandat 272.498 kb on + strand, within HMPREF1058_RS02140at 272.503 kb on + strand, within HMPREF1058_RS02140at 272.510 kb on + strand, within HMPREF1058_RS02140at 272.569 kb on + strand, within HMPREF1058_RS02140at 272.570 kb on - strand, within HMPREF1058_RS02140at 272.573 kb on + strand, within HMPREF1058_RS02140at 272.607 kb on + strand, within HMPREF1058_RS02140at 272.608 kb on - strand, within HMPREF1058_RS02140at 272.608 kb on - strand, within HMPREF1058_RS02140at 272.660 kb on - strand, within HMPREF1058_RS02140at 272.704 kb on + strand, within HMPREF1058_RS02140at 272.724 kb on - strand, within HMPREF1058_RS02140at 272.756 kb on - strand, within HMPREF1058_RS02140at 272.756 kb on - strand, within HMPREF1058_RS02140at 272.760 kb on - strand, within HMPREF1058_RS02140at 272.760 kb on - strand, within HMPREF1058_RS02140at 272.765 kb on - strand, within HMPREF1058_RS02140at 272.803 kb on + strand, within HMPREF1058_RS02140at 272.828 kb on + strand, within HMPREF1058_RS02140at 272.901 kb on + strand, within HMPREF1058_RS02140at 272.901 kb on + strand, within HMPREF1058_RS02140at 272.902 kb on - strand, within HMPREF1058_RS02140at 272.905 kb on + strand, within HMPREF1058_RS02140at 272.905 kb on + strand, within HMPREF1058_RS02140at 272.959 kb on + strand, within HMPREF1058_RS02140at 273.016 kb on + strand, within HMPREF1058_RS02140at 273.137 kb on - strand, within HMPREF1058_RS02140at 273.174 kb on + strand, within HMPREF1058_RS02140at 273.174 kb on + strand, within HMPREF1058_RS02140at 273.174 kb on + strand, within HMPREF1058_RS02140at 273.175 kb on - strand, within HMPREF1058_RS02140at 273.175 kb on - strand, within HMPREF1058_RS02140at 273.179 kb on + strand, within HMPREF1058_RS02140

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C)
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270,869 + HMPREF1058_RS02150 0.28 +2.1
270,880 - HMPREF1058_RS02150 0.28 +3.3
270,883 + HMPREF1058_RS02150 0.29 +2.0
270,883 + HMPREF1058_RS02150 0.29 -0.8
270,883 + HMPREF1058_RS02150 0.29 +2.0
270,884 - HMPREF1058_RS02150 0.29 +4.4
270,885 + HMPREF1058_RS02150 0.29 +3.3
270,900 + HMPREF1058_RS02150 0.30 +3.0
270,901 - HMPREF1058_RS02150 0.30 +3.5
270,986 + HMPREF1058_RS02150 0.37 +0.7
271,006 + HMPREF1058_RS02150 0.38 +2.3
271,023 + HMPREF1058_RS02150 0.39 +2.6
271,025 + HMPREF1058_RS02150 0.40 +2.0
271,104 + HMPREF1058_RS02150 0.46 +3.1
271,146 + HMPREF1058_RS02150 0.49 +0.8
271,147 - HMPREF1058_RS02150 0.49 +3.5
271,157 + HMPREF1058_RS02150 0.50 +1.1
271,158 - HMPREF1058_RS02150 0.50 +3.3
271,159 + HMPREF1058_RS02150 0.50 +2.3
271,159 + HMPREF1058_RS02150 0.50 +1.6
271,180 - HMPREF1058_RS02150 0.52 +3.0
271,184 - HMPREF1058_RS02150 0.52 +2.6
271,268 - HMPREF1058_RS02150 0.58 +0.2
271,268 - HMPREF1058_RS02150 0.58 +2.5
271,399 - HMPREF1058_RS02150 0.68 +3.2
271,463 - HMPREF1058_RS02150 0.73 +2.6
271,486 - HMPREF1058_RS02150 0.75 +3.1
271,498 + HMPREF1058_RS02150 0.76 +2.7
271,551 - HMPREF1058_RS02150 0.80 +3.6
271,551 - HMPREF1058_RS02150 0.80 +1.9
271,585 - HMPREF1058_RS02150 0.83 +2.4
271,614 + HMPREF1058_RS02150 0.85 +2.8
271,626 + HMPREF1058_RS02150 0.86 +2.9
271,627 - HMPREF1058_RS02150 0.86 +5.3
271,629 - HMPREF1058_RS02150 0.86 +2.6
271,629 - HMPREF1058_RS02150 0.86 +3.2
271,666 - HMPREF1058_RS02150 0.89 +2.7
271,672 + HMPREF1058_RS02150 0.89 +2.9
271,677 - HMPREF1058_RS02150 0.90 +2.9
271,723 - +2.0
271,726 + +1.4
271,793 - +2.5
271,886 + HMPREF1058_RS02145 0.21 +1.9
271,916 - HMPREF1058_RS02145 0.29 +1.5
271,917 + HMPREF1058_RS02145 0.29 +3.4
271,984 + HMPREF1058_RS02145 0.46 +2.0
271,985 - HMPREF1058_RS02145 0.46 +1.9
271,985 - HMPREF1058_RS02145 0.46 +1.3
271,988 - HMPREF1058_RS02145 0.47 +1.1
271,988 - HMPREF1058_RS02145 0.47 +3.7
272,065 + HMPREF1058_RS02145 0.67 +1.7
272,157 + +1.7
272,179 - +0.8
272,200 + +1.9
272,237 + +3.0
272,253 + +1.2
272,306 - +1.5
272,306 - +1.4
272,319 - +0.3
272,347 + -0.2
272,347 + +0.4
272,390 + -2.2
272,428 - +0.1
272,435 - -1.4
272,435 - +1.4
272,457 + -2.0
272,489 - -0.6
272,489 - -0.2
272,498 + HMPREF1058_RS02140 0.11 -1.5
272,503 + HMPREF1058_RS02140 0.11 +0.2
272,510 + HMPREF1058_RS02140 0.11 -0.5
272,569 + HMPREF1058_RS02140 0.16 -1.9
272,570 - HMPREF1058_RS02140 0.16 +0.4
272,573 + HMPREF1058_RS02140 0.16 -0.6
272,607 + HMPREF1058_RS02140 0.19 -2.9
272,608 - HMPREF1058_RS02140 0.19 -0.9
272,608 - HMPREF1058_RS02140 0.19 -2.9
272,660 - HMPREF1058_RS02140 0.23 -1.0
272,704 + HMPREF1058_RS02140 0.26 +0.8
272,724 - HMPREF1058_RS02140 0.27 -1.8
272,756 - HMPREF1058_RS02140 0.30 -1.0
272,756 - HMPREF1058_RS02140 0.30 +1.5
272,760 - HMPREF1058_RS02140 0.30 -0.6
272,760 - HMPREF1058_RS02140 0.30 -1.7
272,765 - HMPREF1058_RS02140 0.30 +0.4
272,803 + HMPREF1058_RS02140 0.33 -1.4
272,828 + HMPREF1058_RS02140 0.35 -0.7
272,901 + HMPREF1058_RS02140 0.41 +0.2
272,901 + HMPREF1058_RS02140 0.41 -1.6
272,902 - HMPREF1058_RS02140 0.41 -3.1
272,905 + HMPREF1058_RS02140 0.41 -0.5
272,905 + HMPREF1058_RS02140 0.41 -1.1
272,959 + HMPREF1058_RS02140 0.45 -0.4
273,016 + HMPREF1058_RS02140 0.49 -0.6
273,137 - HMPREF1058_RS02140 0.58 -0.5
273,174 + HMPREF1058_RS02140 0.61 -0.8
273,174 + HMPREF1058_RS02140 0.61 +0.2
273,174 + HMPREF1058_RS02140 0.61 -1.0
273,175 - HMPREF1058_RS02140 0.61 -1.3
273,175 - HMPREF1058_RS02140 0.61 -1.2
273,179 + HMPREF1058_RS02140 0.61 -0.4

Or see this region's nucleotide sequence