Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01885 and HMPREF1058_RS01880 are separated by 4 nucleotides HMPREF1058_RS01880 and HMPREF1058_RS01875 are separated by 259 nucleotides HMPREF1058_RS01875 and HMPREF1058_RS21185 overlap by 88 nucleotides HMPREF1058_RS21185 and HMPREF1058_RS01870 are separated by 2 nucleotides
HMPREF1058_RS01885: HMPREF1058_RS01885 - hypothetical protein, at 18,200 to 18,595
_RS01885
HMPREF1058_RS01880: HMPREF1058_RS01880 - hypothetical protein, at 18,600 to 19,154
_RS01880
HMPREF1058_RS01875: HMPREF1058_RS01875 - hypothetical protein, at 19,414 to 19,800
_RS01875
HMPREF1058_RS21185: HMPREF1058_RS21185 - hypothetical protein, at 19,713 to 19,994
_RS21185
HMPREF1058_RS01870: HMPREF1058_RS01870 - tape measure protein, at 19,997 to 24,631
_RS01870
Position (kb) 19
20 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 18.466 kb on - strand, within HMPREF1058_RS01885 at 18.466 kb on - strand, within HMPREF1058_RS01885 at 18.468 kb on + strand, within HMPREF1058_RS01885 at 18.469 kb on - strand at 18.469 kb on - strand, within HMPREF1058_RS01885 at 18.484 kb on + strand, within HMPREF1058_RS01885 at 18.492 kb on - strand, within HMPREF1058_RS01885 at 18.548 kb on + strand, within HMPREF1058_RS01885 at 18.567 kb on + strand at 18.594 kb on - strand at 18.599 kb on + strand at 18.862 kb on - strand, within HMPREF1058_RS01880 at 18.862 kb on - strand, within HMPREF1058_RS01880 at 18.954 kb on - strand, within HMPREF1058_RS01880 at 19.113 kb on + strand at 19.115 kb on + strand at 19.116 kb on - strand at 19.116 kb on - strand at 19.172 kb on - strand at 19.255 kb on - strand at 19.342 kb on + strand at 19.383 kb on + strand at 19.385 kb on + strand at 19.385 kb on + strand at 19.386 kb on - strand at 19.386 kb on - strand at 19.386 kb on - strand at 19.387 kb on + strand at 19.388 kb on - strand at 19.388 kb on - strand at 19.478 kb on + strand, within HMPREF1058_RS01875 at 19.492 kb on + strand, within HMPREF1058_RS01875 at 19.493 kb on - strand, within HMPREF1058_RS01875 at 19.495 kb on - strand, within HMPREF1058_RS01875 at 19.521 kb on + strand, within HMPREF1058_RS01875 at 19.584 kb on + strand, within HMPREF1058_RS01875 at 19.585 kb on - strand, within HMPREF1058_RS01875 at 19.585 kb on - strand, within HMPREF1058_RS01875 at 19.825 kb on + strand, within HMPREF1058_RS21185 at 19.857 kb on + strand, within HMPREF1058_RS21185 at 19.860 kb on - strand, within HMPREF1058_RS21185 at 19.860 kb on - strand, within HMPREF1058_RS21185 at 19.927 kb on + strand, within HMPREF1058_RS21185 at 19.928 kb on - strand, within HMPREF1058_RS21185 at 19.950 kb on - strand, within HMPREF1058_RS21185 at 19.992 kb on + strand at 20.009 kb on + strand at 20.291 kb on - strand at 20.530 kb on + strand, within HMPREF1058_RS01870 at 20.531 kb on - strand, within HMPREF1058_RS01870 at 20.534 kb on - strand, within HMPREF1058_RS01870 at 20.534 kb on - strand, within HMPREF1058_RS01870 at 20.602 kb on - strand, within HMPREF1058_RS01870
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 18,466 - HMPREF1058_RS01885 0.67 -0.3 18,466 - HMPREF1058_RS01885 0.67 -0.4 18,468 + HMPREF1058_RS01885 0.68 -0.3 18,469 - +0.0 18,469 - HMPREF1058_RS01885 0.68 -0.8 18,484 + HMPREF1058_RS01885 0.72 -2.2 18,492 - HMPREF1058_RS01885 0.74 +0.1 18,548 + HMPREF1058_RS01885 0.88 +0.4 18,567 + +0.0 18,594 - -0.8 18,599 + -2.6 18,862 - HMPREF1058_RS01880 0.47 -0.6 18,862 - HMPREF1058_RS01880 0.47 -0.7 18,954 - HMPREF1058_RS01880 0.64 -1.6 19,113 + -0.2 19,115 + +1.6 19,116 - +0.0 19,116 - +1.5 19,172 - -0.7 19,255 - +0.4 19,342 + -0.4 19,383 + +1.5 19,385 + -0.7 19,385 + -1.1 19,386 - +0.8 19,386 - -0.8 19,386 - +0.8 19,387 + -2.2 19,388 - -0.2 19,388 - -0.4 19,478 + HMPREF1058_RS01875 0.17 +0.3 19,492 + HMPREF1058_RS01875 0.20 -1.1 19,493 - HMPREF1058_RS01875 0.20 -0.6 19,495 - HMPREF1058_RS01875 0.21 -2.1 19,521 + HMPREF1058_RS01875 0.28 +2.8 19,584 + HMPREF1058_RS01875 0.44 +1.4 19,585 - HMPREF1058_RS01875 0.44 +4.0 19,585 - HMPREF1058_RS01875 0.44 +0.4 19,825 + HMPREF1058_RS21185 0.40 +1.0 19,857 + HMPREF1058_RS21185 0.51 -1.6 19,860 - HMPREF1058_RS21185 0.52 -1.8 19,860 - HMPREF1058_RS21185 0.52 -0.4 19,927 + HMPREF1058_RS21185 0.76 +0.6 19,928 - HMPREF1058_RS21185 0.76 -1.2 19,950 - HMPREF1058_RS21185 0.84 -0.3 19,992 + -1.0 20,009 + -0.6 20,291 - +0.0 20,530 + HMPREF1058_RS01870 0.11 +1.7 20,531 - HMPREF1058_RS01870 0.12 +0.0 20,534 - HMPREF1058_RS01870 0.12 -0.4 20,534 - HMPREF1058_RS01870 0.12 -0.5 20,602 - HMPREF1058_RS01870 0.13 -0.3
Or see this region's nucleotide sequence