Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01795 and HMPREF1058_RS01790 are separated by 57 nucleotides HMPREF1058_RS01790 and HMPREF1058_RS01785 overlap by 18 nucleotides
HMPREF1058_RS01795: HMPREF1058_RS01795 - type I pullulanase, at 39,139 to 41,133
_RS01795
HMPREF1058_RS01790: HMPREF1058_RS01790 - mannonate dehydratase, at 41,191 to 42,369
_RS01790
HMPREF1058_RS01785: HMPREF1058_RS01785 - patatin-like phospholipase family protein, at 42,352 to 44,571
_RS01785
Position (kb) 41
42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 40.193 kb on + strand, within HMPREF1058_RS01795 at 40.220 kb on + strand, within HMPREF1058_RS01795 at 40.221 kb on - strand, within HMPREF1058_RS01795 at 40.404 kb on + strand, within HMPREF1058_RS01795 at 40.419 kb on - strand, within HMPREF1058_RS01795 at 40.489 kb on - strand, within HMPREF1058_RS01795 at 40.510 kb on - strand, within HMPREF1058_RS01795 at 40.512 kb on + strand, within HMPREF1058_RS01795 at 40.529 kb on + strand, within HMPREF1058_RS01795 at 40.547 kb on + strand, within HMPREF1058_RS01795 at 40.552 kb on + strand, within HMPREF1058_RS01795 at 40.552 kb on + strand, within HMPREF1058_RS01795 at 40.557 kb on - strand, within HMPREF1058_RS01795 at 40.731 kb on + strand, within HMPREF1058_RS01795 at 40.740 kb on + strand, within HMPREF1058_RS01795 at 40.766 kb on + strand, within HMPREF1058_RS01795 at 40.823 kb on + strand, within HMPREF1058_RS01795 at 40.824 kb on - strand, within HMPREF1058_RS01795 at 40.827 kb on + strand, within HMPREF1058_RS01795 at 40.827 kb on + strand, within HMPREF1058_RS01795 at 40.874 kb on + strand, within HMPREF1058_RS01795 at 40.874 kb on + strand, within HMPREF1058_RS01795 at 41.026 kb on + strand at 41.049 kb on + strand at 41.122 kb on - strand at 41.123 kb on + strand at 41.131 kb on + strand at 41.132 kb on - strand at 41.167 kb on + strand at 41.174 kb on + strand at 41.186 kb on + strand at 41.291 kb on + strand at 41.292 kb on - strand at 41.450 kb on + strand, within HMPREF1058_RS01790 at 41.489 kb on + strand, within HMPREF1058_RS01790 at 41.495 kb on - strand, within HMPREF1058_RS01790 at 41.496 kb on + strand, within HMPREF1058_RS01790 at 41.604 kb on + strand, within HMPREF1058_RS01790 at 41.639 kb on - strand, within HMPREF1058_RS01790 at 41.683 kb on - strand, within HMPREF1058_RS01790 at 41.721 kb on + strand, within HMPREF1058_RS01790 at 41.721 kb on + strand, within HMPREF1058_RS01790 at 41.722 kb on - strand, within HMPREF1058_RS01790 at 41.723 kb on + strand, within HMPREF1058_RS01790 at 41.745 kb on - strand, within HMPREF1058_RS01790 at 41.756 kb on + strand, within HMPREF1058_RS01790 at 41.757 kb on - strand, within HMPREF1058_RS01790 at 41.786 kb on + strand, within HMPREF1058_RS01790 at 41.809 kb on + strand, within HMPREF1058_RS01790 at 41.810 kb on - strand, within HMPREF1058_RS01790 at 41.888 kb on - strand, within HMPREF1058_RS01790 at 41.894 kb on + strand, within HMPREF1058_RS01790 at 41.895 kb on - strand, within HMPREF1058_RS01790 at 41.895 kb on - strand, within HMPREF1058_RS01790 at 41.898 kb on + strand, within HMPREF1058_RS01790 at 41.898 kb on + strand, within HMPREF1058_RS01790 at 41.898 kb on + strand, within HMPREF1058_RS01790 at 42.060 kb on - strand, within HMPREF1058_RS01790 at 42.076 kb on - strand, within HMPREF1058_RS01790 at 42.101 kb on + strand, within HMPREF1058_RS01790 at 42.101 kb on + strand, within HMPREF1058_RS01790 at 42.320 kb on + strand at 42.321 kb on - strand at 42.378 kb on - strand at 42.381 kb on + strand at 42.381 kb on + strand at 42.382 kb on - strand at 42.408 kb on - strand at 42.438 kb on + strand at 42.457 kb on + strand at 42.458 kb on - strand at 42.478 kb on - strand at 42.521 kb on + strand at 42.522 kb on - strand at 42.700 kb on - strand, within HMPREF1058_RS01785 at 42.836 kb on + strand, within HMPREF1058_RS01785 at 42.836 kb on + strand, within HMPREF1058_RS01785 at 42.974 kb on - strand, within HMPREF1058_RS01785 at 42.993 kb on - strand, within HMPREF1058_RS01785 at 42.994 kb on + strand, within HMPREF1058_RS01785 at 42.995 kb on - strand, within HMPREF1058_RS01785 at 43.087 kb on - strand, within HMPREF1058_RS01785 at 43.120 kb on - strand, within HMPREF1058_RS01785 at 43.138 kb on - strand, within HMPREF1058_RS01785 at 43.139 kb on + strand, within HMPREF1058_RS01785 at 43.139 kb on + strand, within HMPREF1058_RS01785 at 43.140 kb on - strand, within HMPREF1058_RS01785 at 43.233 kb on + strand, within HMPREF1058_RS01785 at 43.282 kb on - strand, within HMPREF1058_RS01785 at 43.312 kb on + strand, within HMPREF1058_RS01785 at 43.359 kb on + strand, within HMPREF1058_RS01785
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 40,193 + HMPREF1058_RS01795 0.53 -0.2 40,220 + HMPREF1058_RS01795 0.54 -0.5 40,221 - HMPREF1058_RS01795 0.54 -0.0 40,404 + HMPREF1058_RS01795 0.63 +0.0 40,419 - HMPREF1058_RS01795 0.64 +0.1 40,489 - HMPREF1058_RS01795 0.68 -0.5 40,510 - HMPREF1058_RS01795 0.69 -1.0 40,512 + HMPREF1058_RS01795 0.69 +1.8 40,529 + HMPREF1058_RS01795 0.70 +0.5 40,547 + HMPREF1058_RS01795 0.71 +1.3 40,552 + HMPREF1058_RS01795 0.71 +1.7 40,552 + HMPREF1058_RS01795 0.71 -0.9 40,557 - HMPREF1058_RS01795 0.71 -0.7 40,731 + HMPREF1058_RS01795 0.80 +0.6 40,740 + HMPREF1058_RS01795 0.80 +0.2 40,766 + HMPREF1058_RS01795 0.82 +1.0 40,823 + HMPREF1058_RS01795 0.84 +1.5 40,824 - HMPREF1058_RS01795 0.84 +0.0 40,827 + HMPREF1058_RS01795 0.85 +1.0 40,827 + HMPREF1058_RS01795 0.85 +0.6 40,874 + HMPREF1058_RS01795 0.87 +0.4 40,874 + HMPREF1058_RS01795 0.87 -0.5 41,026 + -0.2 41,049 + -0.8 41,122 - +1.4 41,123 + +0.0 41,131 + +1.1 41,132 - -0.7 41,167 + +0.2 41,174 + +0.7 41,186 + -0.7 41,291 + +0.3 41,292 - -0.5 41,450 + HMPREF1058_RS01790 0.22 +0.4 41,489 + HMPREF1058_RS01790 0.25 -0.3 41,495 - HMPREF1058_RS01790 0.26 +1.1 41,496 + HMPREF1058_RS01790 0.26 +2.0 41,604 + HMPREF1058_RS01790 0.35 +0.5 41,639 - HMPREF1058_RS01790 0.38 -0.5 41,683 - HMPREF1058_RS01790 0.42 -1.8 41,721 + HMPREF1058_RS01790 0.45 +0.4 41,721 + HMPREF1058_RS01790 0.45 -0.3 41,722 - HMPREF1058_RS01790 0.45 -0.4 41,723 + HMPREF1058_RS01790 0.45 -2.1 41,745 - HMPREF1058_RS01790 0.47 -1.7 41,756 + HMPREF1058_RS01790 0.48 -2.8 41,757 - HMPREF1058_RS01790 0.48 -0.1 41,786 + HMPREF1058_RS01790 0.50 +0.0 41,809 + HMPREF1058_RS01790 0.52 -0.2 41,810 - HMPREF1058_RS01790 0.53 -1.5 41,888 - HMPREF1058_RS01790 0.59 +0.9 41,894 + HMPREF1058_RS01790 0.60 +0.9 41,895 - HMPREF1058_RS01790 0.60 +0.7 41,895 - HMPREF1058_RS01790 0.60 -0.5 41,898 + HMPREF1058_RS01790 0.60 +1.1 41,898 + HMPREF1058_RS01790 0.60 +0.2 41,898 + HMPREF1058_RS01790 0.60 -0.6 42,060 - HMPREF1058_RS01790 0.74 -0.5 42,076 - HMPREF1058_RS01790 0.75 +0.2 42,101 + HMPREF1058_RS01790 0.77 -0.5 42,101 + HMPREF1058_RS01790 0.77 +0.1 42,320 + +0.6 42,321 - +3.0 42,378 - -1.3 42,381 + -0.2 42,381 + +0.5 42,382 - -0.7 42,408 - +1.4 42,438 + -0.0 42,457 + +0.5 42,458 - -1.7 42,478 - -1.2 42,521 + +0.7 42,522 - +1.0 42,700 - HMPREF1058_RS01785 0.16 -2.2 42,836 + HMPREF1058_RS01785 0.22 -0.5 42,836 + HMPREF1058_RS01785 0.22 -0.4 42,974 - HMPREF1058_RS01785 0.28 -0.9 42,993 - HMPREF1058_RS01785 0.29 -1.4 42,994 + HMPREF1058_RS01785 0.29 -0.9 42,995 - HMPREF1058_RS01785 0.29 +1.4 43,087 - HMPREF1058_RS01785 0.33 +0.1 43,120 - HMPREF1058_RS01785 0.35 -1.2 43,138 - HMPREF1058_RS01785 0.35 -0.8 43,139 + HMPREF1058_RS01785 0.35 -1.6 43,139 + HMPREF1058_RS01785 0.35 -0.3 43,140 - HMPREF1058_RS01785 0.35 +0.6 43,233 + HMPREF1058_RS01785 0.40 +1.7 43,282 - HMPREF1058_RS01785 0.42 -0.5 43,312 + HMPREF1058_RS01785 0.43 +2.7 43,359 + HMPREF1058_RS01785 0.45 -0.5
Or see this region's nucleotide sequence