Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01735 and HMPREF1058_RS01730 are separated by 14 nucleotides HMPREF1058_RS01730 and HMPREF1058_RS01725 are separated by 106 nucleotides HMPREF1058_RS01725 and HMPREF1058_RS01720 are separated by 63 nucleotides HMPREF1058_RS01720 and HMPREF1058_RS01715 overlap by 4 nucleotides
HMPREF1058_RS01735: HMPREF1058_RS01735 - excinuclease ABC subunit UvrA, at 54,084 to 56,912
_RS01735
HMPREF1058_RS01730: HMPREF1058_RS01730 - Cys-tRNA(Pro) deacylase, at 56,927 to 57,412
_RS01730
HMPREF1058_RS01725: HMPREF1058_RS01725 - peptide MFS transporter, at 57,519 to 59,180
_RS01725
HMPREF1058_RS01720: HMPREF1058_RS01720 - lysine exporter LysO family protein, at 59,244 to 59,864
_RS01720
HMPREF1058_RS01715: HMPREF1058_RS01715 - LysO family transporter, at 59,861 to 60,139
_RS01715
Position (kb) 57
58
59
60 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 56.542 kb on - strand, within HMPREF1058_RS01735 at 56.544 kb on - strand, within HMPREF1058_RS01735 at 56.546 kb on + strand, within HMPREF1058_RS01735 at 56.643 kb on + strand at 56.660 kb on + strand at 56.753 kb on + strand at 56.782 kb on - strand at 56.983 kb on - strand, within HMPREF1058_RS01730 at 56.987 kb on + strand, within HMPREF1058_RS01730 at 56.987 kb on + strand, within HMPREF1058_RS01730 at 57.227 kb on + strand, within HMPREF1058_RS01730 at 57.228 kb on - strand, within HMPREF1058_RS01730 at 57.278 kb on + strand, within HMPREF1058_RS01730 at 57.279 kb on - strand, within HMPREF1058_RS01730 at 57.279 kb on - strand, within HMPREF1058_RS01730 at 57.280 kb on + strand, within HMPREF1058_RS01730 at 57.280 kb on + strand, within HMPREF1058_RS01730 at 57.280 kb on + strand at 57.282 kb on + strand, within HMPREF1058_RS01730 at 57.282 kb on + strand, within HMPREF1058_RS01730 at 57.283 kb on - strand, within HMPREF1058_RS01730 at 57.314 kb on + strand, within HMPREF1058_RS01730 at 57.314 kb on + strand, within HMPREF1058_RS01730 at 57.314 kb on + strand, within HMPREF1058_RS01730 at 57.315 kb on - strand, within HMPREF1058_RS01730 at 57.317 kb on - strand, within HMPREF1058_RS01730 at 57.496 kb on + strand at 57.504 kb on - strand at 57.589 kb on - strand at 57.687 kb on + strand, within HMPREF1058_RS01725 at 57.819 kb on + strand, within HMPREF1058_RS01725 at 57.893 kb on - strand, within HMPREF1058_RS01725 at 57.954 kb on + strand, within HMPREF1058_RS01725 at 58.042 kb on - strand, within HMPREF1058_RS01725 at 58.042 kb on - strand, within HMPREF1058_RS01725 at 58.170 kb on - strand, within HMPREF1058_RS01725 at 58.170 kb on - strand, within HMPREF1058_RS01725 at 58.181 kb on + strand, within HMPREF1058_RS01725 at 58.199 kb on + strand, within HMPREF1058_RS01725 at 58.203 kb on + strand, within HMPREF1058_RS01725 at 58.216 kb on + strand, within HMPREF1058_RS01725 at 58.269 kb on - strand, within HMPREF1058_RS01725 at 58.379 kb on - strand, within HMPREF1058_RS01725 at 58.517 kb on + strand, within HMPREF1058_RS01725 at 58.595 kb on + strand, within HMPREF1058_RS01725 at 58.632 kb on - strand, within HMPREF1058_RS01725 at 58.634 kb on + strand, within HMPREF1058_RS01725 at 58.635 kb on - strand, within HMPREF1058_RS01725 at 58.643 kb on + strand, within HMPREF1058_RS01725 at 58.723 kb on + strand, within HMPREF1058_RS01725 at 58.723 kb on + strand, within HMPREF1058_RS01725 at 58.801 kb on + strand, within HMPREF1058_RS01725 at 58.841 kb on + strand, within HMPREF1058_RS01725 at 58.914 kb on + strand, within HMPREF1058_RS01725 at 58.992 kb on + strand, within HMPREF1058_RS01725 at 59.054 kb on + strand at 59.194 kb on + strand at 59.194 kb on + strand at 59.194 kb on + strand at 59.194 kb on - strand at 59.195 kb on - strand at 59.195 kb on - strand at 59.195 kb on - strand at 59.196 kb on + strand at 59.197 kb on - strand at 59.198 kb on + strand at 59.285 kb on + strand at 59.361 kb on + strand, within HMPREF1058_RS01720 at 59.362 kb on - strand, within HMPREF1058_RS01720 at 59.362 kb on - strand, within HMPREF1058_RS01720 at 59.557 kb on + strand, within HMPREF1058_RS01720 at 59.561 kb on - strand, within HMPREF1058_RS01720 at 59.586 kb on - strand, within HMPREF1058_RS01720 at 59.723 kb on + strand, within HMPREF1058_RS01720 at 59.723 kb on + strand, within HMPREF1058_RS01720 at 59.759 kb on - strand, within HMPREF1058_RS01720 at 59.791 kb on + strand, within HMPREF1058_RS01720 at 59.819 kb on + strand at 59.912 kb on + strand at 59.917 kb on + strand, within HMPREF1058_RS01715 at 59.918 kb on - strand, within HMPREF1058_RS01715 at 59.933 kb on + strand, within HMPREF1058_RS01715 at 60.049 kb on + strand, within HMPREF1058_RS01715 at 60.089 kb on + strand, within HMPREF1058_RS01715 at 60.089 kb on + strand, within HMPREF1058_RS01715 at 60.089 kb on + strand, within HMPREF1058_RS01715 at 60.089 kb on + strand, within HMPREF1058_RS01715 at 60.090 kb on - strand, within HMPREF1058_RS01715 at 60.094 kb on - strand, within HMPREF1058_RS01715 at 60.094 kb on - strand, within HMPREF1058_RS01715 at 60.099 kb on - strand, within HMPREF1058_RS01715 at 60.118 kb on + strand at 60.119 kb on - strand at 60.126 kb on - strand at 60.127 kb on + strand at 60.127 kb on + strand at 60.127 kb on + strand at 60.127 kb on + strand at 60.128 kb on - strand at 60.128 kb on - strand at 60.131 kb on - strand at 60.133 kb on + strand at 60.167 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 56,542 - HMPREF1058_RS01735 0.87 -0.8 56,544 - HMPREF1058_RS01735 0.87 +1.4 56,546 + HMPREF1058_RS01735 0.87 +1.3 56,643 + -0.2 56,660 + +0.6 56,753 + +0.3 56,782 - +0.5 56,983 - HMPREF1058_RS01730 0.12 +0.3 56,987 + HMPREF1058_RS01730 0.12 +0.2 56,987 + HMPREF1058_RS01730 0.12 +1.7 57,227 + HMPREF1058_RS01730 0.62 +1.5 57,228 - HMPREF1058_RS01730 0.62 -0.9 57,278 + HMPREF1058_RS01730 0.72 -1.1 57,279 - HMPREF1058_RS01730 0.72 -0.6 57,279 - HMPREF1058_RS01730 0.72 -0.2 57,280 + HMPREF1058_RS01730 0.73 -1.6 57,280 + HMPREF1058_RS01730 0.73 +2.5 57,280 + -0.5 57,282 + HMPREF1058_RS01730 0.73 +0.2 57,282 + HMPREF1058_RS01730 0.73 +0.4 57,283 - HMPREF1058_RS01730 0.73 -0.7 57,314 + HMPREF1058_RS01730 0.80 +0.2 57,314 + HMPREF1058_RS01730 0.80 -1.0 57,314 + HMPREF1058_RS01730 0.80 +3.0 57,315 - HMPREF1058_RS01730 0.80 +1.4 57,317 - HMPREF1058_RS01730 0.80 -1.1 57,496 + -1.8 57,504 - -0.4 57,589 - -0.7 57,687 + HMPREF1058_RS01725 0.10 +1.3 57,819 + HMPREF1058_RS01725 0.18 +3.1 57,893 - HMPREF1058_RS01725 0.23 +0.4 57,954 + HMPREF1058_RS01725 0.26 -0.8 58,042 - HMPREF1058_RS01725 0.31 +1.2 58,042 - HMPREF1058_RS01725 0.31 +1.3 58,170 - HMPREF1058_RS01725 0.39 +1.2 58,170 - HMPREF1058_RS01725 0.39 -0.2 58,181 + HMPREF1058_RS01725 0.40 +0.9 58,199 + HMPREF1058_RS01725 0.41 +0.0 58,203 + HMPREF1058_RS01725 0.41 -0.2 58,216 + HMPREF1058_RS01725 0.42 +0.2 58,269 - HMPREF1058_RS01725 0.45 +2.2 58,379 - HMPREF1058_RS01725 0.52 -0.2 58,517 + HMPREF1058_RS01725 0.60 -1.2 58,595 + HMPREF1058_RS01725 0.65 +0.5 58,632 - HMPREF1058_RS01725 0.67 +2.3 58,634 + HMPREF1058_RS01725 0.67 -0.2 58,635 - HMPREF1058_RS01725 0.67 -0.6 58,643 + HMPREF1058_RS01725 0.68 -0.9 58,723 + HMPREF1058_RS01725 0.72 +0.8 58,723 + HMPREF1058_RS01725 0.72 -0.1 58,801 + HMPREF1058_RS01725 0.77 +1.0 58,841 + HMPREF1058_RS01725 0.80 +0.8 58,914 + HMPREF1058_RS01725 0.84 +0.2 58,992 + HMPREF1058_RS01725 0.89 +0.1 59,054 + -2.1 59,194 + -0.9 59,194 + +0.4 59,194 + -1.4 59,194 - +0.2 59,195 - +0.7 59,195 - -0.0 59,195 - -0.3 59,196 + +1.2 59,197 - -0.8 59,198 + -0.2 59,285 + +2.0 59,361 + HMPREF1058_RS01720 0.19 -0.6 59,362 - HMPREF1058_RS01720 0.19 -0.9 59,362 - HMPREF1058_RS01720 0.19 +0.8 59,557 + HMPREF1058_RS01720 0.50 +0.2 59,561 - HMPREF1058_RS01720 0.51 -0.1 59,586 - HMPREF1058_RS01720 0.55 +0.3 59,723 + HMPREF1058_RS01720 0.77 +0.7 59,723 + HMPREF1058_RS01720 0.77 +1.4 59,759 - HMPREF1058_RS01720 0.83 +0.9 59,791 + HMPREF1058_RS01720 0.88 -0.6 59,819 + -0.2 59,912 + -0.3 59,917 + HMPREF1058_RS01715 0.20 -0.3 59,918 - HMPREF1058_RS01715 0.20 +1.3 59,933 + HMPREF1058_RS01715 0.26 -0.9 60,049 + HMPREF1058_RS01715 0.67 -1.1 60,089 + HMPREF1058_RS01715 0.82 +1.4 60,089 + HMPREF1058_RS01715 0.82 +0.1 60,089 + HMPREF1058_RS01715 0.82 +0.7 60,089 + HMPREF1058_RS01715 0.82 -1.3 60,090 - HMPREF1058_RS01715 0.82 -0.4 60,094 - HMPREF1058_RS01715 0.84 -1.0 60,094 - HMPREF1058_RS01715 0.84 +0.2 60,099 - HMPREF1058_RS01715 0.85 -0.2 60,118 + -0.3 60,119 - -0.4 60,126 - +0.7 60,127 + +0.0 60,127 + -0.4 60,127 + +0.0 60,127 + +0.3 60,128 - +2.0 60,128 - -0.1 60,131 - +0.9 60,133 + +0.3 60,167 + -1.7
Or see this region's nucleotide sequence