Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS01605

Experiment: Galactan from Potato 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato 2.5 mg/ml (C)
80,826	-				+0.2
80,869	-				-0.0
80,873	-				-0.2
80,939	+				+1.3
80,983	-				-0.1
81,026	-				+0.8
81,082	-		HMPREF1058_RS01625	0.11	+1.4
81,123	-		HMPREF1058_RS01625	0.30	-1.8
81,147	+		HMPREF1058_RS01625	0.41	-0.4
81,148	-		HMPREF1058_RS01625	0.41	+1.0
81,153	-		HMPREF1058_RS01625	0.43	-0.8
81,201	+		HMPREF1058_RS01625	0.65	-3.8
81,274	+				-1.5
81,275	-				+0.5
81,279	+				-1.0
81,375	+				-1.8
81,462	+		HMPREF1058_RS01620	0.71	+0.5
81,474	+		HMPREF1058_RS01620	0.88	-1.0
81,475	-				+0.4
81,540	-		HMPREF1058_RS01615	0.51	+0.5
81,568	-				+0.0
81,568	-				+1.8
81,664	+		HMPREF1058_RS01610	0.88	+3.4
81,801	-				+2.2
81,902	-		HMPREF1058_RS01605	0.18	-0.2
81,979	+		HMPREF1058_RS01605	0.27	+0.4
81,979	+		HMPREF1058_RS01605	0.27	+1.0
81,979	+		HMPREF1058_RS01605	0.27	+1.0
82,001	-		HMPREF1058_RS01605	0.30	+0.6
82,084	+		HMPREF1058_RS01605	0.40	+1.3
82,085	-		HMPREF1058_RS01605	0.40	-0.7
82,088	+		HMPREF1058_RS01605	0.41	-0.8
82,088	+		HMPREF1058_RS01605	0.41	-2.5
82,088	+		HMPREF1058_RS01605	0.41	+2.5
82,089	-		HMPREF1058_RS01605	0.41	-0.5
82,090	+		HMPREF1058_RS01605	0.41	+0.4
82,091	-		HMPREF1058_RS01605	0.41	-0.5
82,092	+		HMPREF1058_RS01605	0.41	+0.6
82,093	-		HMPREF1058_RS01605	0.41	-0.6
82,093	-		HMPREF1058_RS01605	0.41	+2.2
82,093	-		HMPREF1058_RS01605	0.41	-0.3
82,157	-		HMPREF1058_RS01605	0.49	+0.2
82,161	-		HMPREF1058_RS01605	0.50	-0.8
82,260	-		HMPREF1058_RS01605	0.62	+2.2
82,314	-		HMPREF1058_RS01605	0.69	-0.6
82,460	-		HMPREF1058_RS01605	0.87	-0.4
82,547	+				+0.4
82,624	+				+1.7
82,626	+				+2.3
82,626	+				-0.2
82,758	-				+0.7
82,956	-		HMPREF1058_RS01600	0.25	+0.2
82,959	+		HMPREF1058_RS01600	0.25	+1.4
83,090	+		HMPREF1058_RS01600	0.39	-0.2
83,119	-		HMPREF1058_RS01600	0.42	-1.1
83,160	-				+0.2
83,160	-		HMPREF1058_RS01600	0.46	-0.5
83,163	-		HMPREF1058_RS01600	0.46	+0.3
83,176	+		HMPREF1058_RS01600	0.48	-0.7
83,181	+		HMPREF1058_RS01600	0.48	+0.7
83,238	+		HMPREF1058_RS01600	0.54	+0.5
83,246	-		HMPREF1058_RS01600	0.55	+2.6
83,327	+		HMPREF1058_RS01600	0.63	-1.2
83,336	+		HMPREF1058_RS01600	0.64	-1.0
83,398	-		HMPREF1058_RS01600	0.71	+2.0
83,423	+		HMPREF1058_RS01600	0.73	+1.1
83,468	-		HMPREF1058_RS01600	0.78	+0.7
83,468	-		HMPREF1058_RS01600	0.78	-0.5
83,508	+		HMPREF1058_RS01600	0.82	-0.6
83,509	-		HMPREF1058_RS01600	0.82	+1.9