Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01255 and HMPREF1058_RS01250 are separated by 23 nucleotides HMPREF1058_RS01250 and HMPREF1058_RS01245 are separated by 8 nucleotides HMPREF1058_RS01245 and HMPREF1058_RS01240 are separated by 385 nucleotides
HMPREF1058_RS01255: HMPREF1058_RS01255 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 169,439 to 170,752
_RS01255
HMPREF1058_RS01250: HMPREF1058_RS01250 - DUF4738 domain-containing protein, at 170,776 to 171,564
_RS01250
HMPREF1058_RS01245: HMPREF1058_RS01245 - hypothetical protein, at 171,573 to 171,890
_RS01245
HMPREF1058_RS01240: HMPREF1058_RS01240 - DEAD/DEAH box helicase, at 172,276 to 173,553
_RS01240
Position (kb) 170
171
172 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 169.776 kb on - strand, within HMPREF1058_RS01255 at 169.915 kb on + strand, within HMPREF1058_RS01255 at 169.963 kb on - strand, within HMPREF1058_RS01255 at 170.070 kb on - strand, within HMPREF1058_RS01255 at 170.151 kb on + strand, within HMPREF1058_RS01255 at 170.152 kb on - strand, within HMPREF1058_RS01255 at 170.155 kb on + strand, within HMPREF1058_RS01255 at 170.155 kb on + strand, within HMPREF1058_RS01255 at 170.172 kb on + strand at 170.458 kb on - strand, within HMPREF1058_RS01255 at 170.502 kb on - strand, within HMPREF1058_RS01255 at 170.515 kb on + strand, within HMPREF1058_RS01255 at 170.566 kb on + strand, within HMPREF1058_RS01255 at 170.570 kb on + strand, within HMPREF1058_RS01255 at 170.570 kb on + strand, within HMPREF1058_RS01255 at 170.571 kb on - strand, within HMPREF1058_RS01255 at 170.571 kb on - strand, within HMPREF1058_RS01255 at 170.571 kb on - strand, within HMPREF1058_RS01255 at 170.636 kb on - strand at 170.697 kb on - strand at 170.755 kb on - strand at 170.779 kb on + strand at 170.779 kb on + strand at 170.780 kb on - strand at 170.780 kb on - strand at 170.893 kb on - strand, within HMPREF1058_RS01250 at 170.894 kb on + strand, within HMPREF1058_RS01250 at 170.894 kb on + strand, within HMPREF1058_RS01250 at 170.895 kb on - strand, within HMPREF1058_RS01250 at 171.010 kb on - strand, within HMPREF1058_RS01250 at 171.061 kb on - strand, within HMPREF1058_RS01250 at 171.095 kb on + strand, within HMPREF1058_RS01250 at 171.105 kb on + strand, within HMPREF1058_RS01250 at 171.106 kb on - strand, within HMPREF1058_RS01250 at 171.145 kb on - strand, within HMPREF1058_RS01250 at 171.163 kb on + strand, within HMPREF1058_RS01250 at 171.164 kb on - strand, within HMPREF1058_RS01250 at 171.164 kb on - strand, within HMPREF1058_RS01250 at 171.200 kb on - strand, within HMPREF1058_RS01250 at 171.200 kb on - strand, within HMPREF1058_RS01250 at 171.223 kb on + strand, within HMPREF1058_RS01250 at 171.229 kb on + strand, within HMPREF1058_RS01250 at 171.229 kb on + strand, within HMPREF1058_RS01250 at 171.230 kb on - strand, within HMPREF1058_RS01250 at 171.299 kb on + strand, within HMPREF1058_RS01250 at 171.300 kb on - strand, within HMPREF1058_RS01250 at 171.302 kb on - strand, within HMPREF1058_RS01250 at 171.302 kb on - strand, within HMPREF1058_RS01250 at 171.304 kb on + strand, within HMPREF1058_RS01250 at 171.305 kb on - strand, within HMPREF1058_RS01250 at 171.312 kb on + strand, within HMPREF1058_RS01250 at 171.313 kb on - strand, within HMPREF1058_RS01250 at 171.317 kb on + strand, within HMPREF1058_RS01250 at 171.318 kb on - strand, within HMPREF1058_RS01250 at 171.332 kb on - strand, within HMPREF1058_RS01250 at 171.332 kb on - strand, within HMPREF1058_RS01250 at 171.353 kb on - strand, within HMPREF1058_RS01250 at 171.419 kb on + strand, within HMPREF1058_RS01250 at 171.505 kb on + strand at 171.505 kb on + strand at 171.508 kb on - strand at 171.573 kb on - strand at 171.600 kb on + strand at 171.601 kb on - strand at 172.034 kb on + strand at 172.035 kb on - strand at 172.039 kb on + strand at 172.040 kb on - strand at 172.040 kb on - strand at 172.080 kb on + strand at 172.081 kb on - strand at 172.095 kb on - strand at 172.103 kb on + strand at 172.123 kb on + strand at 172.123 kb on + strand at 172.125 kb on + strand at 172.125 kb on + strand at 172.125 kb on + strand at 172.126 kb on - strand at 172.126 kb on - strand at 172.126 kb on - strand at 172.126 kb on - strand at 172.126 kb on - strand at 172.127 kb on + strand at 172.145 kb on + strand at 172.145 kb on + strand at 172.145 kb on + strand at 172.145 kb on + strand at 172.145 kb on + strand at 172.146 kb on - strand at 172.343 kb on + strand at 172.343 kb on + strand at 172.343 kb on + strand at 172.343 kb on + strand at 172.452 kb on - strand, within HMPREF1058_RS01240 at 172.519 kb on - strand, within HMPREF1058_RS01240 at 172.552 kb on - strand, within HMPREF1058_RS01240
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 169,776 - HMPREF1058_RS01255 0.26 -0.2 169,915 + HMPREF1058_RS01255 0.36 +1.2 169,963 - HMPREF1058_RS01255 0.40 -0.6 170,070 - HMPREF1058_RS01255 0.48 +0.2 170,151 + HMPREF1058_RS01255 0.54 +1.4 170,152 - HMPREF1058_RS01255 0.54 -0.2 170,155 + HMPREF1058_RS01255 0.54 +0.0 170,155 + HMPREF1058_RS01255 0.54 +2.7 170,172 + +4.6 170,458 - HMPREF1058_RS01255 0.78 +1.2 170,502 - HMPREF1058_RS01255 0.81 +1.5 170,515 + HMPREF1058_RS01255 0.82 -1.0 170,566 + HMPREF1058_RS01255 0.86 -0.2 170,570 + HMPREF1058_RS01255 0.86 +0.4 170,570 + HMPREF1058_RS01255 0.86 -0.7 170,571 - HMPREF1058_RS01255 0.86 +0.8 170,571 - HMPREF1058_RS01255 0.86 -0.2 170,571 - HMPREF1058_RS01255 0.86 +0.6 170,636 - +1.3 170,697 - +0.2 170,755 - -0.7 170,779 + -0.5 170,779 + -0.4 170,780 - +0.2 170,780 - +0.8 170,893 - HMPREF1058_RS01250 0.15 -1.4 170,894 + HMPREF1058_RS01250 0.15 +1.7 170,894 + HMPREF1058_RS01250 0.15 +2.6 170,895 - HMPREF1058_RS01250 0.15 -1.3 171,010 - HMPREF1058_RS01250 0.30 +1.3 171,061 - HMPREF1058_RS01250 0.36 -2.2 171,095 + HMPREF1058_RS01250 0.40 +0.6 171,105 + HMPREF1058_RS01250 0.42 +3.0 171,106 - HMPREF1058_RS01250 0.42 +0.6 171,145 - HMPREF1058_RS01250 0.47 +3.0 171,163 + HMPREF1058_RS01250 0.49 +2.2 171,164 - HMPREF1058_RS01250 0.49 -1.6 171,164 - HMPREF1058_RS01250 0.49 -0.2 171,200 - HMPREF1058_RS01250 0.54 -0.1 171,200 - HMPREF1058_RS01250 0.54 +2.0 171,223 + HMPREF1058_RS01250 0.57 +0.8 171,229 + HMPREF1058_RS01250 0.57 +0.3 171,229 + HMPREF1058_RS01250 0.57 -1.4 171,230 - HMPREF1058_RS01250 0.58 -0.4 171,299 + HMPREF1058_RS01250 0.66 +1.2 171,300 - HMPREF1058_RS01250 0.66 +1.4 171,302 - HMPREF1058_RS01250 0.67 -0.9 171,302 - HMPREF1058_RS01250 0.67 -0.4 171,304 + HMPREF1058_RS01250 0.67 +0.7 171,305 - HMPREF1058_RS01250 0.67 +1.3 171,312 + HMPREF1058_RS01250 0.68 +0.0 171,313 - HMPREF1058_RS01250 0.68 -0.6 171,317 + HMPREF1058_RS01250 0.69 +0.5 171,318 - HMPREF1058_RS01250 0.69 +0.5 171,332 - HMPREF1058_RS01250 0.70 +0.1 171,332 - HMPREF1058_RS01250 0.70 -0.4 171,353 - HMPREF1058_RS01250 0.73 -0.3 171,419 + HMPREF1058_RS01250 0.81 +1.0 171,505 + +1.3 171,505 + +0.4 171,508 - -0.5 171,573 - -0.0 171,600 + +0.9 171,601 - -2.2 172,034 + +0.9 172,035 - -1.1 172,039 + +0.3 172,040 - +0.8 172,040 - -0.5 172,080 + +0.0 172,081 - -0.2 172,095 - +1.0 172,103 + -0.8 172,123 + +0.8 172,123 + +1.3 172,125 + +0.9 172,125 + +0.3 172,125 + -0.3 172,126 - +1.2 172,126 - +0.8 172,126 - +0.8 172,126 - -0.2 172,126 - +0.8 172,127 + -1.4 172,145 + -2.8 172,145 + -0.2 172,145 + +0.8 172,145 + +1.0 172,145 + +0.5 172,146 - +2.0 172,343 + +0.2 172,343 + -1.9 172,343 + -1.3 172,343 + -0.6 172,452 - HMPREF1058_RS01240 0.14 +0.5 172,519 - HMPREF1058_RS01240 0.19 +1.2 172,552 - HMPREF1058_RS01240 0.22 +1.5
Or see this region's nucleotide sequence