Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01250 and HMPREF1058_RS01245 are separated by 8 nucleotides HMPREF1058_RS01245 and HMPREF1058_RS01240 are separated by 385 nucleotides HMPREF1058_RS01240 and HMPREF1058_RS01235 are separated by 20 nucleotides
HMPREF1058_RS01250: HMPREF1058_RS01250 - DUF4738 domain-containing protein, at 170,776 to 171,564
_RS01250
HMPREF1058_RS01245: HMPREF1058_RS01245 - hypothetical protein, at 171,573 to 171,890
_RS01245
HMPREF1058_RS01240: HMPREF1058_RS01240 - DEAD/DEAH box helicase, at 172,276 to 173,553
_RS01240
HMPREF1058_RS01235: HMPREF1058_RS01235 - phosphoserine phosphatase SerB, at 173,574 to 174,806
_RS01235
Position (kb) 172
173
174 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 171.299 kb on + strand, within HMPREF1058_RS01250 at 171.300 kb on - strand, within HMPREF1058_RS01250 at 171.302 kb on - strand, within HMPREF1058_RS01250 at 171.302 kb on - strand, within HMPREF1058_RS01250 at 171.304 kb on + strand, within HMPREF1058_RS01250 at 171.305 kb on - strand, within HMPREF1058_RS01250 at 171.312 kb on + strand, within HMPREF1058_RS01250 at 171.313 kb on - strand, within HMPREF1058_RS01250 at 171.317 kb on + strand, within HMPREF1058_RS01250 at 171.318 kb on - strand, within HMPREF1058_RS01250 at 171.332 kb on - strand, within HMPREF1058_RS01250 at 171.332 kb on - strand, within HMPREF1058_RS01250 at 171.353 kb on - strand, within HMPREF1058_RS01250 at 171.419 kb on + strand, within HMPREF1058_RS01250 at 171.505 kb on + strand at 171.505 kb on + strand at 171.508 kb on - strand at 171.573 kb on - strand at 171.600 kb on + strand at 171.601 kb on - strand at 172.034 kb on + strand at 172.035 kb on - strand at 172.039 kb on + strand at 172.040 kb on - strand at 172.040 kb on - strand at 172.080 kb on + strand at 172.081 kb on - strand at 172.095 kb on - strand at 172.103 kb on + strand at 172.123 kb on + strand at 172.123 kb on + strand at 172.125 kb on + strand at 172.125 kb on + strand at 172.125 kb on + strand at 172.126 kb on - strand at 172.126 kb on - strand at 172.126 kb on - strand at 172.126 kb on - strand at 172.126 kb on - strand at 172.127 kb on + strand at 172.145 kb on + strand at 172.145 kb on + strand at 172.145 kb on + strand at 172.145 kb on + strand at 172.145 kb on + strand at 172.146 kb on - strand at 172.343 kb on + strand at 172.343 kb on + strand at 172.343 kb on + strand at 172.343 kb on + strand at 172.452 kb on - strand, within HMPREF1058_RS01240 at 172.519 kb on - strand, within HMPREF1058_RS01240 at 172.552 kb on - strand, within HMPREF1058_RS01240 at 172.571 kb on + strand, within HMPREF1058_RS01240 at 172.572 kb on - strand, within HMPREF1058_RS01240 at 172.572 kb on - strand, within HMPREF1058_RS01240 at 172.599 kb on - strand, within HMPREF1058_RS01240 at 172.630 kb on + strand, within HMPREF1058_RS01240 at 172.631 kb on - strand, within HMPREF1058_RS01240 at 172.695 kb on + strand, within HMPREF1058_RS01240 at 172.695 kb on + strand, within HMPREF1058_RS01240 at 172.741 kb on + strand, within HMPREF1058_RS01240 at 172.742 kb on - strand, within HMPREF1058_RS01240 at 172.851 kb on + strand, within HMPREF1058_RS01240 at 172.852 kb on - strand, within HMPREF1058_RS01240 at 172.881 kb on + strand, within HMPREF1058_RS01240 at 172.881 kb on + strand, within HMPREF1058_RS01240 at 172.881 kb on + strand, within HMPREF1058_RS01240 at 172.882 kb on - strand at 172.882 kb on - strand, within HMPREF1058_RS01240 at 172.883 kb on + strand, within HMPREF1058_RS01240 at 172.883 kb on + strand, within HMPREF1058_RS01240 at 172.884 kb on - strand, within HMPREF1058_RS01240 at 172.972 kb on + strand, within HMPREF1058_RS01240 at 173.028 kb on - strand, within HMPREF1058_RS01240 at 173.043 kb on + strand, within HMPREF1058_RS01240 at 173.074 kb on - strand, within HMPREF1058_RS01240 at 173.120 kb on - strand, within HMPREF1058_RS01240 at 173.123 kb on + strand, within HMPREF1058_RS01240 at 173.160 kb on + strand, within HMPREF1058_RS01240 at 173.170 kb on + strand, within HMPREF1058_RS01240 at 173.290 kb on + strand, within HMPREF1058_RS01240 at 173.464 kb on - strand at 173.474 kb on - strand at 173.555 kb on + strand at 173.557 kb on + strand at 173.558 kb on - strand at 173.558 kb on - strand at 173.558 kb on - strand at 173.558 kb on - strand at 173.558 kb on - strand at 173.559 kb on + strand at 173.559 kb on + strand at 173.560 kb on - strand at 173.599 kb on + strand at 173.649 kb on - strand at 173.649 kb on - strand at 173.676 kb on + strand at 173.752 kb on - strand, within HMPREF1058_RS01235 at 173.760 kb on - strand, within HMPREF1058_RS01235 at 173.760 kb on - strand, within HMPREF1058_RS01235 at 173.769 kb on + strand, within HMPREF1058_RS01235 at 173.769 kb on + strand, within HMPREF1058_RS01235 at 173.770 kb on - strand, within HMPREF1058_RS01235 at 173.816 kb on + strand, within HMPREF1058_RS01235 at 173.833 kb on - strand, within HMPREF1058_RS01235 at 173.833 kb on - strand, within HMPREF1058_RS01235 at 173.857 kb on - strand, within HMPREF1058_RS01235 at 173.893 kb on - strand, within HMPREF1058_RS01235 at 173.893 kb on - strand, within HMPREF1058_RS01235 at 173.897 kb on - strand, within HMPREF1058_RS01235 at 173.912 kb on + strand, within HMPREF1058_RS01235 at 173.913 kb on - strand, within HMPREF1058_RS01235 at 173.923 kb on + strand, within HMPREF1058_RS01235 at 173.924 kb on - strand, within HMPREF1058_RS01235 at 173.935 kb on + strand, within HMPREF1058_RS01235 at 173.936 kb on - strand, within HMPREF1058_RS01235 at 174.183 kb on - strand, within HMPREF1058_RS01235 at 174.196 kb on - strand, within HMPREF1058_RS01235 at 174.248 kb on + strand, within HMPREF1058_RS01235 at 174.248 kb on + strand, within HMPREF1058_RS01235 at 174.248 kb on + strand, within HMPREF1058_RS01235 at 174.357 kb on - strand, within HMPREF1058_RS01235 at 174.366 kb on + strand, within HMPREF1058_RS01235 at 174.405 kb on - strand, within HMPREF1058_RS01235 at 174.447 kb on + strand, within HMPREF1058_RS01235 at 174.447 kb on + strand at 174.448 kb on - strand, within HMPREF1058_RS01235
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 171,299 + HMPREF1058_RS01250 0.66 +1.2 171,300 - HMPREF1058_RS01250 0.66 +1.4 171,302 - HMPREF1058_RS01250 0.67 -0.9 171,302 - HMPREF1058_RS01250 0.67 -0.4 171,304 + HMPREF1058_RS01250 0.67 +0.7 171,305 - HMPREF1058_RS01250 0.67 +1.3 171,312 + HMPREF1058_RS01250 0.68 +0.0 171,313 - HMPREF1058_RS01250 0.68 -0.6 171,317 + HMPREF1058_RS01250 0.69 +0.5 171,318 - HMPREF1058_RS01250 0.69 +0.5 171,332 - HMPREF1058_RS01250 0.70 +0.1 171,332 - HMPREF1058_RS01250 0.70 -0.4 171,353 - HMPREF1058_RS01250 0.73 -0.3 171,419 + HMPREF1058_RS01250 0.81 +1.0 171,505 + +1.3 171,505 + +0.4 171,508 - -0.5 171,573 - -0.0 171,600 + +0.9 171,601 - -2.2 172,034 + +0.9 172,035 - -1.1 172,039 + +0.3 172,040 - +0.8 172,040 - -0.5 172,080 + +0.0 172,081 - -0.2 172,095 - +1.0 172,103 + -0.8 172,123 + +0.8 172,123 + +1.3 172,125 + +0.9 172,125 + +0.3 172,125 + -0.3 172,126 - +1.2 172,126 - +0.8 172,126 - +0.8 172,126 - -0.2 172,126 - +0.8 172,127 + -1.4 172,145 + -2.8 172,145 + -0.2 172,145 + +0.8 172,145 + +1.0 172,145 + +0.5 172,146 - +2.0 172,343 + +0.2 172,343 + -1.9 172,343 + -1.3 172,343 + -0.6 172,452 - HMPREF1058_RS01240 0.14 +0.5 172,519 - HMPREF1058_RS01240 0.19 +1.2 172,552 - HMPREF1058_RS01240 0.22 +1.5 172,571 + HMPREF1058_RS01240 0.23 +0.7 172,572 - HMPREF1058_RS01240 0.23 -1.1 172,572 - HMPREF1058_RS01240 0.23 +1.2 172,599 - HMPREF1058_RS01240 0.25 -0.0 172,630 + HMPREF1058_RS01240 0.28 +1.1 172,631 - HMPREF1058_RS01240 0.28 +1.8 172,695 + HMPREF1058_RS01240 0.33 +1.6 172,695 + HMPREF1058_RS01240 0.33 +0.1 172,741 + HMPREF1058_RS01240 0.36 +2.9 172,742 - HMPREF1058_RS01240 0.36 -0.3 172,851 + HMPREF1058_RS01240 0.45 +0.6 172,852 - HMPREF1058_RS01240 0.45 +0.8 172,881 + HMPREF1058_RS01240 0.47 -0.4 172,881 + HMPREF1058_RS01240 0.47 +0.1 172,881 + HMPREF1058_RS01240 0.47 +0.1 172,882 - +2.2 172,882 - HMPREF1058_RS01240 0.47 +1.7 172,883 + HMPREF1058_RS01240 0.47 +1.1 172,883 + HMPREF1058_RS01240 0.47 +1.5 172,884 - HMPREF1058_RS01240 0.48 +0.4 172,972 + HMPREF1058_RS01240 0.54 +0.6 173,028 - HMPREF1058_RS01240 0.59 +0.3 173,043 + HMPREF1058_RS01240 0.60 +0.8 173,074 - HMPREF1058_RS01240 0.62 +2.5 173,120 - HMPREF1058_RS01240 0.66 +0.9 173,123 + HMPREF1058_RS01240 0.66 -0.1 173,160 + HMPREF1058_RS01240 0.69 -0.7 173,170 + HMPREF1058_RS01240 0.70 -0.3 173,290 + HMPREF1058_RS01240 0.79 +1.4 173,464 - +0.3 173,474 - +0.7 173,555 + +0.4 173,557 + +0.8 173,558 - +0.8 173,558 - +0.9 173,558 - +3.6 173,558 - -0.6 173,558 - +1.0 173,559 + -0.2 173,559 + +1.4 173,560 - +1.4 173,599 + +0.4 173,649 - +0.6 173,649 - +0.9 173,676 + +0.7 173,752 - HMPREF1058_RS01235 0.14 +0.7 173,760 - HMPREF1058_RS01235 0.15 +0.4 173,760 - HMPREF1058_RS01235 0.15 +0.9 173,769 + HMPREF1058_RS01235 0.16 -0.1 173,769 + HMPREF1058_RS01235 0.16 -0.8 173,770 - HMPREF1058_RS01235 0.16 +0.9 173,816 + HMPREF1058_RS01235 0.20 +2.0 173,833 - HMPREF1058_RS01235 0.21 +0.9 173,833 - HMPREF1058_RS01235 0.21 +0.2 173,857 - HMPREF1058_RS01235 0.23 -0.1 173,893 - HMPREF1058_RS01235 0.26 +0.1 173,893 - HMPREF1058_RS01235 0.26 +3.0 173,897 - HMPREF1058_RS01235 0.26 -1.5 173,912 + HMPREF1058_RS01235 0.27 +0.6 173,913 - HMPREF1058_RS01235 0.27 +1.4 173,923 + HMPREF1058_RS01235 0.28 +2.2 173,924 - HMPREF1058_RS01235 0.28 +0.0 173,935 + HMPREF1058_RS01235 0.29 +0.4 173,936 - HMPREF1058_RS01235 0.29 +2.0 174,183 - HMPREF1058_RS01235 0.49 -0.5 174,196 - HMPREF1058_RS01235 0.50 -0.6 174,248 + HMPREF1058_RS01235 0.55 +0.7 174,248 + HMPREF1058_RS01235 0.55 -0.8 174,248 + HMPREF1058_RS01235 0.55 +1.4 174,357 - HMPREF1058_RS01235 0.64 -0.6 174,366 + HMPREF1058_RS01235 0.64 +0.5 174,405 - HMPREF1058_RS01235 0.67 +0.2 174,447 + HMPREF1058_RS01235 0.71 +0.5 174,447 + +2.7 174,448 - HMPREF1058_RS01235 0.71 -0.3
Or see this region's nucleotide sequence