Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01235 and HMPREF1058_RS01230 are separated by 272 nucleotides HMPREF1058_RS01230 and HMPREF1058_RS01225 are separated by 158 nucleotides HMPREF1058_RS01225 and HMPREF1058_RS01220 are separated by 0 nucleotides
HMPREF1058_RS01235: HMPREF1058_RS01235 - phosphoserine phosphatase SerB, at 173,574 to 174,806
_RS01235
HMPREF1058_RS01230: HMPREF1058_RS01230 - redoxin domain-containing protein, at 175,079 to 175,573
_RS01230
HMPREF1058_RS01225: HMPREF1058_RS01225 - HAD family phosphatase, at 175,732 to 176,352
_RS01225
HMPREF1058_RS01220: HMPREF1058_RS01220 - YjgP/YjgQ family permease, at 176,353 to 177,525
_RS01220
Position (kb) 175
176 Strain fitness (log2 ratio) -2
-1
0
1
2 at 174.183 kb on - strand, within HMPREF1058_RS01235 at 174.196 kb on - strand, within HMPREF1058_RS01235 at 174.248 kb on + strand, within HMPREF1058_RS01235 at 174.248 kb on + strand, within HMPREF1058_RS01235 at 174.248 kb on + strand, within HMPREF1058_RS01235 at 174.357 kb on - strand, within HMPREF1058_RS01235 at 174.366 kb on + strand, within HMPREF1058_RS01235 at 174.405 kb on - strand, within HMPREF1058_RS01235 at 174.447 kb on + strand, within HMPREF1058_RS01235 at 174.447 kb on + strand at 174.448 kb on - strand, within HMPREF1058_RS01235 at 174.604 kb on - strand, within HMPREF1058_RS01235 at 174.795 kb on - strand at 174.797 kb on + strand at 174.807 kb on - strand at 174.825 kb on - strand at 174.843 kb on + strand at 174.945 kb on - strand at 175.059 kb on - strand at 175.065 kb on + strand at 175.066 kb on - strand at 175.077 kb on - strand at 175.077 kb on - strand at 175.114 kb on - strand at 175.201 kb on + strand, within HMPREF1058_RS01230 at 175.202 kb on - strand, within HMPREF1058_RS01230 at 175.204 kb on + strand, within HMPREF1058_RS01230 at 175.205 kb on - strand, within HMPREF1058_RS01230 at 175.249 kb on + strand, within HMPREF1058_RS01230 at 175.253 kb on + strand, within HMPREF1058_RS01230 at 175.253 kb on + strand, within HMPREF1058_RS01230 at 175.254 kb on - strand, within HMPREF1058_RS01230 at 175.254 kb on - strand, within HMPREF1058_RS01230 at 175.254 kb on - strand, within HMPREF1058_RS01230 at 175.258 kb on - strand, within HMPREF1058_RS01230 at 175.264 kb on - strand, within HMPREF1058_RS01230 at 175.280 kb on + strand, within HMPREF1058_RS01230 at 175.373 kb on + strand, within HMPREF1058_RS01230 at 175.373 kb on + strand, within HMPREF1058_RS01230 at 175.424 kb on - strand, within HMPREF1058_RS01230 at 175.461 kb on + strand, within HMPREF1058_RS01230 at 175.461 kb on + strand, within HMPREF1058_RS01230 at 175.472 kb on + strand, within HMPREF1058_RS01230 at 175.653 kb on + strand at 175.654 kb on - strand at 175.655 kb on + strand at 175.673 kb on + strand at 175.673 kb on + strand at 175.674 kb on - strand at 175.674 kb on - strand at 175.723 kb on - strand at 175.744 kb on - strand at 175.749 kb on + strand at 175.844 kb on + strand, within HMPREF1058_RS01225 at 175.845 kb on - strand, within HMPREF1058_RS01225 at 175.855 kb on + strand, within HMPREF1058_RS01225 at 175.954 kb on + strand, within HMPREF1058_RS01225 at 176.007 kb on + strand, within HMPREF1058_RS01225 at 176.048 kb on + strand, within HMPREF1058_RS01225 at 176.049 kb on - strand, within HMPREF1058_RS01225 at 176.049 kb on - strand, within HMPREF1058_RS01225 at 176.049 kb on - strand, within HMPREF1058_RS01225 at 176.050 kb on + strand, within HMPREF1058_RS01225 at 176.050 kb on + strand, within HMPREF1058_RS01225 at 176.050 kb on + strand, within HMPREF1058_RS01225 at 176.051 kb on - strand, within HMPREF1058_RS01225 at 176.052 kb on + strand, within HMPREF1058_RS01225 at 176.052 kb on + strand, within HMPREF1058_RS01225 at 176.052 kb on + strand, within HMPREF1058_RS01225 at 176.053 kb on - strand, within HMPREF1058_RS01225 at 176.054 kb on + strand, within HMPREF1058_RS01225 at 176.055 kb on - strand, within HMPREF1058_RS01225 at 176.150 kb on - strand, within HMPREF1058_RS01225 at 176.150 kb on - strand, within HMPREF1058_RS01225 at 176.197 kb on - strand, within HMPREF1058_RS01225 at 176.200 kb on + strand, within HMPREF1058_RS01225 at 176.202 kb on + strand, within HMPREF1058_RS01225 at 176.272 kb on - strand, within HMPREF1058_RS01225 at 176.348 kb on + strand at 176.355 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 174,183 - HMPREF1058_RS01235 0.49 -0.5 174,196 - HMPREF1058_RS01235 0.50 -0.6 174,248 + HMPREF1058_RS01235 0.55 +0.7 174,248 + HMPREF1058_RS01235 0.55 -0.8 174,248 + HMPREF1058_RS01235 0.55 +1.4 174,357 - HMPREF1058_RS01235 0.64 -0.6 174,366 + HMPREF1058_RS01235 0.64 +0.5 174,405 - HMPREF1058_RS01235 0.67 +0.2 174,447 + HMPREF1058_RS01235 0.71 +0.5 174,447 + +2.7 174,448 - HMPREF1058_RS01235 0.71 -0.3 174,604 - HMPREF1058_RS01235 0.84 +0.3 174,795 - +0.8 174,797 + +2.6 174,807 - +0.4 174,825 - -1.1 174,843 + +0.9 174,945 - -0.7 175,059 - +1.1 175,065 + +0.2 175,066 - -0.5 175,077 - -1.9 175,077 - -0.3 175,114 - -0.0 175,201 + HMPREF1058_RS01230 0.25 +1.3 175,202 - HMPREF1058_RS01230 0.25 +0.0 175,204 + HMPREF1058_RS01230 0.25 +1.5 175,205 - HMPREF1058_RS01230 0.25 +0.1 175,249 + HMPREF1058_RS01230 0.34 +0.5 175,253 + HMPREF1058_RS01230 0.35 +0.0 175,253 + HMPREF1058_RS01230 0.35 +0.5 175,254 - HMPREF1058_RS01230 0.35 +0.2 175,254 - HMPREF1058_RS01230 0.35 +0.8 175,254 - HMPREF1058_RS01230 0.35 +1.3 175,258 - HMPREF1058_RS01230 0.36 -0.6 175,264 - HMPREF1058_RS01230 0.37 +1.0 175,280 + HMPREF1058_RS01230 0.41 -0.9 175,373 + HMPREF1058_RS01230 0.59 +0.7 175,373 + HMPREF1058_RS01230 0.59 +0.8 175,424 - HMPREF1058_RS01230 0.70 -1.5 175,461 + HMPREF1058_RS01230 0.77 +1.5 175,461 + HMPREF1058_RS01230 0.77 -0.1 175,472 + HMPREF1058_RS01230 0.79 +0.4 175,653 + +0.6 175,654 - -0.7 175,655 + -1.5 175,673 + -0.7 175,673 + +0.7 175,674 - -1.4 175,674 - -2.0 175,723 - -1.7 175,744 - +0.0 175,749 + +1.3 175,844 + HMPREF1058_RS01225 0.18 +1.2 175,845 - HMPREF1058_RS01225 0.18 -1.7 175,855 + HMPREF1058_RS01225 0.20 +1.3 175,954 + HMPREF1058_RS01225 0.36 +0.1 176,007 + HMPREF1058_RS01225 0.44 +0.7 176,048 + HMPREF1058_RS01225 0.51 -1.0 176,049 - HMPREF1058_RS01225 0.51 -0.5 176,049 - HMPREF1058_RS01225 0.51 -0.0 176,049 - HMPREF1058_RS01225 0.51 +1.1 176,050 + HMPREF1058_RS01225 0.51 +1.5 176,050 + HMPREF1058_RS01225 0.51 +0.2 176,050 + HMPREF1058_RS01225 0.51 -0.6 176,051 - HMPREF1058_RS01225 0.51 -0.7 176,052 + HMPREF1058_RS01225 0.52 +1.0 176,052 + HMPREF1058_RS01225 0.52 +1.2 176,052 + HMPREF1058_RS01225 0.52 +0.7 176,053 - HMPREF1058_RS01225 0.52 -0.3 176,054 + HMPREF1058_RS01225 0.52 +0.5 176,055 - HMPREF1058_RS01225 0.52 +0.7 176,150 - HMPREF1058_RS01225 0.67 -0.9 176,150 - HMPREF1058_RS01225 0.67 -0.2 176,197 - HMPREF1058_RS01225 0.75 -0.5 176,200 + HMPREF1058_RS01225 0.75 -0.1 176,202 + HMPREF1058_RS01225 0.76 +0.3 176,272 - HMPREF1058_RS01225 0.87 -0.7 176,348 + -0.5 176,355 - -0.3
Or see this region's nucleotide sequence