Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01215 and HMPREF1058_RS01210 are separated by 2 nucleotides HMPREF1058_RS01210 and HMPREF1058_RS01205 are separated by 181 nucleotides HMPREF1058_RS01205 and HMPREF1058_RS01200 are separated by 80 nucleotides
HMPREF1058_RS01215: HMPREF1058_RS01215 - tRNA guanosine(34) transglycosylase Tgt, at 177,536 to 178,666
_RS01215
HMPREF1058_RS01210: HMPREF1058_RS01210 - endopeptidase La, at 178,669 to 181,146
_RS01210
HMPREF1058_RS01205: HMPREF1058_RS01205 - methyltransferase, at 181,328 to 182,032
_RS01205
HMPREF1058_RS01200: HMPREF1058_RS01200 - diacylglycerol kinase family lipid kinase, at 182,113 to 183,147
_RS01200
Position (kb) 178
179
180
181
182 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 177.729 kb on - strand, within HMPREF1058_RS01215 at 177.729 kb on - strand, within HMPREF1058_RS01215 at 177.729 kb on - strand, within HMPREF1058_RS01215 at 177.863 kb on - strand, within HMPREF1058_RS01215 at 177.867 kb on - strand, within HMPREF1058_RS01215 at 177.897 kb on - strand, within HMPREF1058_RS01215 at 177.897 kb on - strand, within HMPREF1058_RS01215 at 177.897 kb on - strand, within HMPREF1058_RS01215 at 177.973 kb on - strand, within HMPREF1058_RS01215 at 178.089 kb on - strand, within HMPREF1058_RS01215 at 178.101 kb on - strand, within HMPREF1058_RS01215 at 178.223 kb on - strand, within HMPREF1058_RS01215 at 178.247 kb on - strand, within HMPREF1058_RS01215 at 178.314 kb on - strand, within HMPREF1058_RS01215 at 178.316 kb on - strand, within HMPREF1058_RS01215 at 178.316 kb on - strand, within HMPREF1058_RS01215 at 178.316 kb on - strand, within HMPREF1058_RS01215 at 178.470 kb on - strand, within HMPREF1058_RS01215 at 178.474 kb on - strand, within HMPREF1058_RS01215 at 178.483 kb on - strand, within HMPREF1058_RS01215 at 178.483 kb on - strand, within HMPREF1058_RS01215 at 178.646 kb on - strand at 178.646 kb on - strand at 178.648 kb on - strand at 178.754 kb on - strand at 179.080 kb on - strand, within HMPREF1058_RS01210 at 179.080 kb on - strand, within HMPREF1058_RS01210 at 179.090 kb on - strand, within HMPREF1058_RS01210 at 179.153 kb on - strand, within HMPREF1058_RS01210 at 179.204 kb on - strand, within HMPREF1058_RS01210 at 179.289 kb on - strand, within HMPREF1058_RS01210 at 179.304 kb on - strand, within HMPREF1058_RS01210 at 179.330 kb on - strand, within HMPREF1058_RS01210 at 179.330 kb on - strand, within HMPREF1058_RS01210 at 179.411 kb on - strand, within HMPREF1058_RS01210 at 179.464 kb on - strand, within HMPREF1058_RS01210 at 179.464 kb on - strand at 179.464 kb on - strand, within HMPREF1058_RS01210 at 179.464 kb on - strand, within HMPREF1058_RS01210 at 179.464 kb on - strand, within HMPREF1058_RS01210 at 179.496 kb on - strand, within HMPREF1058_RS01210 at 179.665 kb on - strand, within HMPREF1058_RS01210 at 179.865 kb on - strand, within HMPREF1058_RS01210 at 179.920 kb on - strand, within HMPREF1058_RS01210 at 179.920 kb on - strand, within HMPREF1058_RS01210 at 179.920 kb on - strand, within HMPREF1058_RS01210 at 179.924 kb on - strand, within HMPREF1058_RS01210 at 179.924 kb on - strand, within HMPREF1058_RS01210 at 179.924 kb on - strand, within HMPREF1058_RS01210 at 179.928 kb on - strand, within HMPREF1058_RS01210 at 179.928 kb on - strand, within HMPREF1058_RS01210 at 180.119 kb on - strand, within HMPREF1058_RS01210 at 180.119 kb on - strand, within HMPREF1058_RS01210 at 180.119 kb on - strand, within HMPREF1058_RS01210 at 180.121 kb on - strand, within HMPREF1058_RS01210 at 180.177 kb on - strand, within HMPREF1058_RS01210 at 180.181 kb on - strand, within HMPREF1058_RS01210 at 180.181 kb on - strand, within HMPREF1058_RS01210 at 180.471 kb on - strand, within HMPREF1058_RS01210 at 180.471 kb on - strand, within HMPREF1058_RS01210 at 180.471 kb on - strand, within HMPREF1058_RS01210 at 180.471 kb on - strand, within HMPREF1058_RS01210 at 180.471 kb on - strand, within HMPREF1058_RS01210 at 180.471 kb on - strand at 180.791 kb on - strand, within HMPREF1058_RS01210 at 180.791 kb on - strand, within HMPREF1058_RS01210 at 180.791 kb on - strand, within HMPREF1058_RS01210 at 180.848 kb on - strand, within HMPREF1058_RS01210 at 180.848 kb on - strand, within HMPREF1058_RS01210 at 180.855 kb on - strand, within HMPREF1058_RS01210 at 180.855 kb on - strand, within HMPREF1058_RS01210 at 180.883 kb on - strand, within HMPREF1058_RS01210 at 180.930 kb on - strand at 180.986 kb on - strand at 181.090 kb on - strand at 181.090 kb on - strand at 181.270 kb on + strand at 181.283 kb on + strand at 181.322 kb on + strand at 181.323 kb on - strand at 181.324 kb on + strand at 181.325 kb on - strand at 181.325 kb on - strand at 181.367 kb on + strand at 181.668 kb on - strand, within HMPREF1058_RS01205 at 181.746 kb on + strand, within HMPREF1058_RS01205 at 181.799 kb on - strand, within HMPREF1058_RS01205 at 181.985 kb on - strand at 181.985 kb on - strand at 181.996 kb on + strand at 181.997 kb on - strand at 181.998 kb on + strand at 181.998 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 177,729 - HMPREF1058_RS01215 0.17 -1.1 177,729 - HMPREF1058_RS01215 0.17 -0.5 177,729 - HMPREF1058_RS01215 0.17 -0.2 177,863 - HMPREF1058_RS01215 0.29 +1.3 177,867 - HMPREF1058_RS01215 0.29 -2.6 177,897 - HMPREF1058_RS01215 0.32 -1.1 177,897 - HMPREF1058_RS01215 0.32 -0.7 177,897 - HMPREF1058_RS01215 0.32 -0.0 177,973 - HMPREF1058_RS01215 0.39 -0.9 178,089 - HMPREF1058_RS01215 0.49 -0.8 178,101 - HMPREF1058_RS01215 0.50 -2.2 178,223 - HMPREF1058_RS01215 0.61 -0.7 178,247 - HMPREF1058_RS01215 0.63 +0.2 178,314 - HMPREF1058_RS01215 0.69 -1.6 178,316 - HMPREF1058_RS01215 0.69 -1.6 178,316 - HMPREF1058_RS01215 0.69 +0.2 178,316 - HMPREF1058_RS01215 0.69 -0.4 178,470 - HMPREF1058_RS01215 0.83 -0.5 178,474 - HMPREF1058_RS01215 0.83 -1.5 178,483 - HMPREF1058_RS01215 0.84 -0.3 178,483 - HMPREF1058_RS01215 0.84 +0.7 178,646 - -2.5 178,646 - -1.8 178,648 - +0.5 178,754 - +1.9 179,080 - HMPREF1058_RS01210 0.17 +1.2 179,080 - HMPREF1058_RS01210 0.17 +2.3 179,090 - HMPREF1058_RS01210 0.17 +3.4 179,153 - HMPREF1058_RS01210 0.20 +1.5 179,204 - HMPREF1058_RS01210 0.22 +2.5 179,289 - HMPREF1058_RS01210 0.25 +1.4 179,304 - HMPREF1058_RS01210 0.26 +1.4 179,330 - HMPREF1058_RS01210 0.27 +2.5 179,330 - HMPREF1058_RS01210 0.27 +2.3 179,411 - HMPREF1058_RS01210 0.30 +3.5 179,464 - HMPREF1058_RS01210 0.32 +2.1 179,464 - +0.7 179,464 - HMPREF1058_RS01210 0.32 +0.1 179,464 - HMPREF1058_RS01210 0.32 +1.6 179,464 - HMPREF1058_RS01210 0.32 +2.7 179,496 - HMPREF1058_RS01210 0.33 +1.7 179,665 - HMPREF1058_RS01210 0.40 +2.0 179,865 - HMPREF1058_RS01210 0.48 +1.5 179,920 - HMPREF1058_RS01210 0.50 +3.0 179,920 - HMPREF1058_RS01210 0.50 +2.0 179,920 - HMPREF1058_RS01210 0.50 +2.6 179,924 - HMPREF1058_RS01210 0.51 +2.3 179,924 - HMPREF1058_RS01210 0.51 +3.0 179,924 - HMPREF1058_RS01210 0.51 +1.8 179,928 - HMPREF1058_RS01210 0.51 +1.2 179,928 - HMPREF1058_RS01210 0.51 -0.7 180,119 - HMPREF1058_RS01210 0.59 -0.7 180,119 - HMPREF1058_RS01210 0.59 +2.3 180,119 - HMPREF1058_RS01210 0.59 +1.5 180,121 - HMPREF1058_RS01210 0.59 +4.7 180,177 - HMPREF1058_RS01210 0.61 +1.2 180,181 - HMPREF1058_RS01210 0.61 +0.8 180,181 - HMPREF1058_RS01210 0.61 +1.6 180,471 - HMPREF1058_RS01210 0.73 +1.0 180,471 - HMPREF1058_RS01210 0.73 +2.9 180,471 - HMPREF1058_RS01210 0.73 +2.0 180,471 - HMPREF1058_RS01210 0.73 +1.1 180,471 - HMPREF1058_RS01210 0.73 +1.9 180,471 - -0.3 180,791 - HMPREF1058_RS01210 0.86 -0.6 180,791 - HMPREF1058_RS01210 0.86 +0.4 180,791 - HMPREF1058_RS01210 0.86 +1.3 180,848 - HMPREF1058_RS01210 0.88 +2.4 180,848 - HMPREF1058_RS01210 0.88 +0.8 180,855 - HMPREF1058_RS01210 0.88 +0.7 180,855 - HMPREF1058_RS01210 0.88 +0.9 180,883 - HMPREF1058_RS01210 0.89 -0.8 180,930 - +1.2 180,986 - +0.9 181,090 - +0.4 181,090 - +0.0 181,270 + -2.0 181,283 + +0.2 181,322 + +1.4 181,323 - +0.7 181,324 + -0.9 181,325 - +0.3 181,325 - +1.5 181,367 + +1.0 181,668 - HMPREF1058_RS01205 0.48 -1.6 181,746 + HMPREF1058_RS01205 0.59 -0.1 181,799 - HMPREF1058_RS01205 0.67 -1.5 181,985 - -1.2 181,985 - +0.2 181,996 + +0.1 181,997 - +0.8 181,998 + -1.7 181,998 + +2.0
Or see this region's nucleotide sequence