Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06530 and HMPREF1058_RS0119785 are separated by 126 nucleotides HMPREF1058_RS0119785 and HMPREF1058_RS06525 are separated by 222 nucleotides
HMPREF1058_RS06530: HMPREF1058_RS06530 - flippase, at 454,519 to 455,991
_RS06530
HMPREF1058_RS0119785: HMPREF1058_RS0119785 - hypothetical protein, at 456,118 to 457,161
_RS0119785
HMPREF1058_RS06525: HMPREF1058_RS06525 - hypothetical protein, at 457,384 to 458,661
_RS06525
Position (kb) 456
457
458 Strain fitness (log2 ratio) -2
-1
0
1
2 at 455.163 kb on - strand, within HMPREF1058_RS06530 at 455.167 kb on - strand, within HMPREF1058_RS06530 at 455.167 kb on - strand, within HMPREF1058_RS06530 at 455.197 kb on + strand, within HMPREF1058_RS06530 at 455.198 kb on - strand, within HMPREF1058_RS06530 at 455.216 kb on + strand, within HMPREF1058_RS06530 at 455.290 kb on - strand, within HMPREF1058_RS06530 at 455.318 kb on + strand, within HMPREF1058_RS06530 at 455.319 kb on - strand, within HMPREF1058_RS06530 at 455.400 kb on + strand, within HMPREF1058_RS06530 at 455.406 kb on - strand, within HMPREF1058_RS06530 at 455.439 kb on - strand, within HMPREF1058_RS06530 at 455.451 kb on + strand, within HMPREF1058_RS06530 at 455.463 kb on - strand, within HMPREF1058_RS06530 at 455.468 kb on + strand, within HMPREF1058_RS06530 at 455.469 kb on - strand, within HMPREF1058_RS06530 at 455.493 kb on + strand, within HMPREF1058_RS06530 at 455.494 kb on - strand, within HMPREF1058_RS06530 at 455.514 kb on - strand, within HMPREF1058_RS06530 at 455.529 kb on - strand, within HMPREF1058_RS06530 at 455.529 kb on - strand, within HMPREF1058_RS06530 at 455.589 kb on + strand, within HMPREF1058_RS06530 at 455.589 kb on + strand, within HMPREF1058_RS06530 at 455.589 kb on + strand at 455.613 kb on - strand, within HMPREF1058_RS06530 at 455.643 kb on - strand, within HMPREF1058_RS06530 at 455.643 kb on - strand, within HMPREF1058_RS06530 at 455.667 kb on + strand, within HMPREF1058_RS06530 at 455.668 kb on - strand, within HMPREF1058_RS06530 at 455.668 kb on - strand, within HMPREF1058_RS06530 at 455.673 kb on + strand, within HMPREF1058_RS06530 at 455.689 kb on - strand, within HMPREF1058_RS06530 at 455.689 kb on - strand, within HMPREF1058_RS06530 at 455.740 kb on + strand, within HMPREF1058_RS06530 at 455.743 kb on - strand, within HMPREF1058_RS06530 at 455.779 kb on + strand, within HMPREF1058_RS06530 at 455.780 kb on - strand, within HMPREF1058_RS06530 at 455.786 kb on + strand, within HMPREF1058_RS06530 at 455.813 kb on + strand at 455.848 kb on - strand at 455.848 kb on - strand at 455.858 kb on + strand at 455.858 kb on + strand at 455.874 kb on - strand at 455.888 kb on - strand at 455.888 kb on - strand at 455.889 kb on + strand at 455.891 kb on + strand at 455.892 kb on - strand at 455.892 kb on - strand at 455.892 kb on - strand at 455.906 kb on + strand at 455.906 kb on + strand at 455.926 kb on - strand at 455.930 kb on + strand at 455.930 kb on + strand at 455.942 kb on + strand at 456.104 kb on - strand at 456.110 kb on - strand at 456.132 kb on + strand at 456.133 kb on - strand at 456.144 kb on + strand at 456.220 kb on + strand at 456.221 kb on - strand at 456.237 kb on + strand, within HMPREF1058_RS0119785 at 456.238 kb on - strand, within HMPREF1058_RS0119785 at 456.275 kb on + strand, within HMPREF1058_RS0119785 at 456.307 kb on + strand, within HMPREF1058_RS0119785 at 456.308 kb on - strand, within HMPREF1058_RS0119785 at 456.357 kb on + strand, within HMPREF1058_RS0119785 at 456.381 kb on + strand, within HMPREF1058_RS0119785 at 456.382 kb on - strand, within HMPREF1058_RS0119785 at 456.383 kb on + strand, within HMPREF1058_RS0119785 at 456.383 kb on + strand, within HMPREF1058_RS0119785 at 456.384 kb on - strand, within HMPREF1058_RS0119785 at 456.385 kb on + strand, within HMPREF1058_RS0119785 at 456.385 kb on + strand, within HMPREF1058_RS0119785 at 456.386 kb on - strand, within HMPREF1058_RS0119785 at 456.386 kb on - strand, within HMPREF1058_RS0119785 at 456.386 kb on - strand, within HMPREF1058_RS0119785 at 456.451 kb on - strand, within HMPREF1058_RS0119785 at 456.492 kb on + strand, within HMPREF1058_RS0119785 at 456.493 kb on - strand, within HMPREF1058_RS0119785 at 456.514 kb on + strand, within HMPREF1058_RS0119785 at 456.514 kb on + strand, within HMPREF1058_RS0119785 at 456.539 kb on + strand, within HMPREF1058_RS0119785 at 456.554 kb on - strand, within HMPREF1058_RS0119785 at 456.557 kb on + strand, within HMPREF1058_RS0119785 at 456.568 kb on - strand, within HMPREF1058_RS0119785 at 456.648 kb on + strand, within HMPREF1058_RS0119785 at 456.648 kb on + strand, within HMPREF1058_RS0119785 at 456.662 kb on + strand, within HMPREF1058_RS0119785 at 456.662 kb on + strand, within HMPREF1058_RS0119785 at 456.666 kb on + strand, within HMPREF1058_RS0119785 at 456.667 kb on - strand, within HMPREF1058_RS0119785 at 456.709 kb on - strand, within HMPREF1058_RS0119785 at 456.713 kb on + strand, within HMPREF1058_RS0119785 at 456.713 kb on + strand, within HMPREF1058_RS0119785 at 456.714 kb on - strand, within HMPREF1058_RS0119785 at 456.729 kb on + strand, within HMPREF1058_RS0119785 at 456.730 kb on - strand, within HMPREF1058_RS0119785 at 456.735 kb on + strand, within HMPREF1058_RS0119785 at 456.781 kb on + strand, within HMPREF1058_RS0119785 at 456.795 kb on - strand, within HMPREF1058_RS0119785 at 456.825 kb on + strand, within HMPREF1058_RS0119785 at 456.839 kb on + strand, within HMPREF1058_RS0119785 at 456.862 kb on - strand, within HMPREF1058_RS0119785 at 456.894 kb on + strand, within HMPREF1058_RS0119785 at 456.894 kb on + strand, within HMPREF1058_RS0119785 at 456.907 kb on + strand, within HMPREF1058_RS0119785 at 456.951 kb on - strand, within HMPREF1058_RS0119785 at 456.951 kb on - strand, within HMPREF1058_RS0119785 at 456.951 kb on - strand, within HMPREF1058_RS0119785 at 456.951 kb on - strand, within HMPREF1058_RS0119785 at 456.953 kb on - strand, within HMPREF1058_RS0119785 at 456.964 kb on - strand, within HMPREF1058_RS0119785 at 456.964 kb on - strand, within HMPREF1058_RS0119785 at 456.973 kb on - strand, within HMPREF1058_RS0119785 at 457.015 kb on + strand, within HMPREF1058_RS0119785 at 457.106 kb on - strand at 457.106 kb on - strand at 457.126 kb on - strand at 457.144 kb on - strand at 457.173 kb on + strand at 457.173 kb on + strand at 457.173 kb on + strand at 457.174 kb on - strand at 457.191 kb on + strand at 457.192 kb on - strand at 457.212 kb on - strand at 457.218 kb on + strand at 457.247 kb on - strand at 457.259 kb on + strand at 457.260 kb on - strand at 457.276 kb on - strand at 457.309 kb on + strand at 457.350 kb on - strand at 457.350 kb on - strand at 457.380 kb on - strand at 457.383 kb on + strand at 457.485 kb on + strand at 457.509 kb on + strand at 457.509 kb on + strand at 457.510 kb on - strand at 457.594 kb on + strand, within HMPREF1058_RS06525 at 457.611 kb on + strand, within HMPREF1058_RS06525 at 457.615 kb on - strand, within HMPREF1058_RS06525 at 457.617 kb on + strand, within HMPREF1058_RS06525 at 457.636 kb on - strand, within HMPREF1058_RS06525 at 457.639 kb on + strand, within HMPREF1058_RS06525 at 457.645 kb on + strand, within HMPREF1058_RS06525 at 457.666 kb on - strand, within HMPREF1058_RS06525 at 457.668 kb on - strand, within HMPREF1058_RS06525 at 457.668 kb on - strand, within HMPREF1058_RS06525 at 457.672 kb on - strand, within HMPREF1058_RS06525 at 457.675 kb on + strand, within HMPREF1058_RS06525 at 457.675 kb on + strand, within HMPREF1058_RS06525 at 457.678 kb on + strand, within HMPREF1058_RS06525 at 457.686 kb on + strand, within HMPREF1058_RS06525 at 457.687 kb on - strand, within HMPREF1058_RS06525 at 457.692 kb on - strand, within HMPREF1058_RS06525 at 457.707 kb on + strand, within HMPREF1058_RS06525 at 457.773 kb on + strand, within HMPREF1058_RS06525 at 457.802 kb on + strand, within HMPREF1058_RS06525 at 457.818 kb on + strand, within HMPREF1058_RS06525 at 457.818 kb on + strand, within HMPREF1058_RS06525 at 457.821 kb on + strand, within HMPREF1058_RS06525 at 457.823 kb on + strand, within HMPREF1058_RS06525 at 457.824 kb on - strand, within HMPREF1058_RS06525 at 457.824 kb on - strand, within HMPREF1058_RS06525 at 457.845 kb on + strand, within HMPREF1058_RS06525 at 457.845 kb on + strand, within HMPREF1058_RS06525 at 457.845 kb on + strand, within HMPREF1058_RS06525 at 457.870 kb on - strand, within HMPREF1058_RS06525 at 457.893 kb on + strand, within HMPREF1058_RS06525 at 457.903 kb on - strand, within HMPREF1058_RS06525 at 457.905 kb on + strand, within HMPREF1058_RS06525 at 457.932 kb on - strand, within HMPREF1058_RS06525 at 457.966 kb on - strand, within HMPREF1058_RS06525 at 457.966 kb on - strand, within HMPREF1058_RS06525 at 457.977 kb on - strand, within HMPREF1058_RS06525 at 458.033 kb on + strand, within HMPREF1058_RS06525 at 458.054 kb on + strand, within HMPREF1058_RS06525 at 458.055 kb on - strand, within HMPREF1058_RS06525 at 458.055 kb on - strand, within HMPREF1058_RS06525 at 458.071 kb on - strand, within HMPREF1058_RS06525 at 458.077 kb on + strand, within HMPREF1058_RS06525 at 458.079 kb on + strand, within HMPREF1058_RS06525
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 455,163 - HMPREF1058_RS06530 0.44 +0.8 455,167 - HMPREF1058_RS06530 0.44 -1.1 455,167 - HMPREF1058_RS06530 0.44 -0.8 455,197 + HMPREF1058_RS06530 0.46 -0.5 455,198 - HMPREF1058_RS06530 0.46 +1.0 455,216 + HMPREF1058_RS06530 0.47 +0.6 455,290 - HMPREF1058_RS06530 0.52 +1.5 455,318 + HMPREF1058_RS06530 0.54 +0.3 455,319 - HMPREF1058_RS06530 0.54 -1.3 455,400 + HMPREF1058_RS06530 0.60 +0.3 455,406 - HMPREF1058_RS06530 0.60 -0.4 455,439 - HMPREF1058_RS06530 0.62 +1.3 455,451 + HMPREF1058_RS06530 0.63 +1.3 455,463 - HMPREF1058_RS06530 0.64 -1.1 455,468 + HMPREF1058_RS06530 0.64 -1.6 455,469 - HMPREF1058_RS06530 0.64 +1.3 455,493 + HMPREF1058_RS06530 0.66 -1.4 455,494 - HMPREF1058_RS06530 0.66 +1.0 455,514 - HMPREF1058_RS06530 0.68 -0.9 455,529 - HMPREF1058_RS06530 0.69 -0.0 455,529 - HMPREF1058_RS06530 0.69 +0.4 455,589 + HMPREF1058_RS06530 0.73 +2.6 455,589 + HMPREF1058_RS06530 0.73 +1.6 455,589 + +2.6 455,613 - HMPREF1058_RS06530 0.74 -0.2 455,643 - HMPREF1058_RS06530 0.76 -1.3 455,643 - HMPREF1058_RS06530 0.76 -0.2 455,667 + HMPREF1058_RS06530 0.78 -1.2 455,668 - HMPREF1058_RS06530 0.78 +0.8 455,668 - HMPREF1058_RS06530 0.78 +0.1 455,673 + HMPREF1058_RS06530 0.78 +1.0 455,689 - HMPREF1058_RS06530 0.79 +0.4 455,689 - HMPREF1058_RS06530 0.79 -2.6 455,740 + HMPREF1058_RS06530 0.83 -1.7 455,743 - HMPREF1058_RS06530 0.83 +0.3 455,779 + HMPREF1058_RS06530 0.86 +1.1 455,780 - HMPREF1058_RS06530 0.86 +1.1 455,786 + HMPREF1058_RS06530 0.86 -2.0 455,813 + +0.6 455,848 - -2.1 455,848 - +0.8 455,858 + -1.2 455,858 + +2.4 455,874 - +1.4 455,888 - -0.3 455,888 - -1.1 455,889 + +0.1 455,891 + +1.0 455,892 - -1.6 455,892 - +1.0 455,892 - -0.2 455,906 + -0.6 455,906 + -0.2 455,926 - -0.5 455,930 + +0.0 455,930 + +0.6 455,942 + +0.5 456,104 - -0.6 456,110 - -1.1 456,132 + -1.0 456,133 - -1.1 456,144 + +0.7 456,220 + +0.4 456,221 - -0.4 456,237 + HMPREF1058_RS0119785 0.11 +0.3 456,238 - HMPREF1058_RS0119785 0.11 +1.0 456,275 + HMPREF1058_RS0119785 0.15 -0.5 456,307 + HMPREF1058_RS0119785 0.18 +1.6 456,308 - HMPREF1058_RS0119785 0.18 -0.1 456,357 + HMPREF1058_RS0119785 0.23 +1.8 456,381 + HMPREF1058_RS0119785 0.25 +1.3 456,382 - HMPREF1058_RS0119785 0.25 -1.1 456,383 + HMPREF1058_RS0119785 0.25 -0.1 456,383 + HMPREF1058_RS0119785 0.25 +1.2 456,384 - HMPREF1058_RS0119785 0.25 +0.8 456,385 + HMPREF1058_RS0119785 0.26 +0.7 456,385 + HMPREF1058_RS0119785 0.26 +0.4 456,386 - HMPREF1058_RS0119785 0.26 +2.1 456,386 - HMPREF1058_RS0119785 0.26 -1.9 456,386 - HMPREF1058_RS0119785 0.26 +0.5 456,451 - HMPREF1058_RS0119785 0.32 -0.1 456,492 + HMPREF1058_RS0119785 0.36 -1.0 456,493 - HMPREF1058_RS0119785 0.36 -0.2 456,514 + HMPREF1058_RS0119785 0.38 -0.6 456,514 + HMPREF1058_RS0119785 0.38 +1.0 456,539 + HMPREF1058_RS0119785 0.40 +1.0 456,554 - HMPREF1058_RS0119785 0.42 +1.7 456,557 + HMPREF1058_RS0119785 0.42 -1.9 456,568 - HMPREF1058_RS0119785 0.43 +1.2 456,648 + HMPREF1058_RS0119785 0.51 -1.0 456,648 + HMPREF1058_RS0119785 0.51 -1.3 456,662 + HMPREF1058_RS0119785 0.52 +1.9 456,662 + HMPREF1058_RS0119785 0.52 -1.4 456,666 + HMPREF1058_RS0119785 0.52 -0.4 456,667 - HMPREF1058_RS0119785 0.53 +0.7 456,709 - HMPREF1058_RS0119785 0.57 +0.5 456,713 + HMPREF1058_RS0119785 0.57 +2.0 456,713 + HMPREF1058_RS0119785 0.57 +1.4 456,714 - HMPREF1058_RS0119785 0.57 -0.3 456,729 + HMPREF1058_RS0119785 0.59 -1.7 456,730 - HMPREF1058_RS0119785 0.59 +1.1 456,735 + HMPREF1058_RS0119785 0.59 -1.7 456,781 + HMPREF1058_RS0119785 0.64 +0.3 456,795 - HMPREF1058_RS0119785 0.65 +1.0 456,825 + HMPREF1058_RS0119785 0.68 +2.2 456,839 + HMPREF1058_RS0119785 0.69 -1.8 456,862 - HMPREF1058_RS0119785 0.71 +1.2 456,894 + HMPREF1058_RS0119785 0.74 -2.1 456,894 + HMPREF1058_RS0119785 0.74 +0.3 456,907 + HMPREF1058_RS0119785 0.76 +0.2 456,951 - HMPREF1058_RS0119785 0.80 +0.2 456,951 - HMPREF1058_RS0119785 0.80 +1.8 456,951 - HMPREF1058_RS0119785 0.80 -0.7 456,951 - HMPREF1058_RS0119785 0.80 -0.5 456,953 - HMPREF1058_RS0119785 0.80 -2.1 456,964 - HMPREF1058_RS0119785 0.81 +1.3 456,964 - HMPREF1058_RS0119785 0.81 +1.3 456,973 - HMPREF1058_RS0119785 0.82 +1.2 457,015 + HMPREF1058_RS0119785 0.86 +2.6 457,106 - -1.2 457,106 - +1.5 457,126 - -1.0 457,144 - +1.5 457,173 + +1.0 457,173 + +0.3 457,173 + -1.2 457,174 - -0.3 457,191 + -0.9 457,192 - -0.8 457,212 - +0.1 457,218 + -0.2 457,247 - -0.8 457,259 + -0.1 457,260 - +2.2 457,276 - -0.7 457,309 + +0.5 457,350 - +1.8 457,350 - +0.7 457,380 - +1.1 457,383 + +2.1 457,485 + -0.3 457,509 + -0.9 457,509 + -0.4 457,510 - +0.7 457,594 + HMPREF1058_RS06525 0.16 -1.6 457,611 + HMPREF1058_RS06525 0.18 -0.4 457,615 - HMPREF1058_RS06525 0.18 +1.6 457,617 + HMPREF1058_RS06525 0.18 -0.3 457,636 - HMPREF1058_RS06525 0.20 +1.0 457,639 + HMPREF1058_RS06525 0.20 -0.0 457,645 + HMPREF1058_RS06525 0.20 -0.8 457,666 - HMPREF1058_RS06525 0.22 -0.8 457,668 - HMPREF1058_RS06525 0.22 +0.0 457,668 - HMPREF1058_RS06525 0.22 +2.1 457,672 - HMPREF1058_RS06525 0.23 +1.3 457,675 + HMPREF1058_RS06525 0.23 -1.4 457,675 + HMPREF1058_RS06525 0.23 +0.1 457,678 + HMPREF1058_RS06525 0.23 -1.0 457,686 + HMPREF1058_RS06525 0.24 -0.9 457,687 - HMPREF1058_RS06525 0.24 +0.7 457,692 - HMPREF1058_RS06525 0.24 -0.9 457,707 + HMPREF1058_RS06525 0.25 -2.3 457,773 + HMPREF1058_RS06525 0.30 -0.2 457,802 + HMPREF1058_RS06525 0.33 -0.3 457,818 + HMPREF1058_RS06525 0.34 -0.4 457,818 + HMPREF1058_RS06525 0.34 -2.6 457,821 + HMPREF1058_RS06525 0.34 +1.7 457,823 + HMPREF1058_RS06525 0.34 -0.3 457,824 - HMPREF1058_RS06525 0.34 +0.4 457,824 - HMPREF1058_RS06525 0.34 -2.2 457,845 + HMPREF1058_RS06525 0.36 -0.3 457,845 + HMPREF1058_RS06525 0.36 -0.8 457,845 + HMPREF1058_RS06525 0.36 -0.6 457,870 - HMPREF1058_RS06525 0.38 +2.0 457,893 + HMPREF1058_RS06525 0.40 +1.4 457,903 - HMPREF1058_RS06525 0.41 +2.1 457,905 + HMPREF1058_RS06525 0.41 +0.0 457,932 - HMPREF1058_RS06525 0.43 +1.5 457,966 - HMPREF1058_RS06525 0.46 +0.4 457,966 - HMPREF1058_RS06525 0.46 +1.8 457,977 - HMPREF1058_RS06525 0.46 +1.5 458,033 + HMPREF1058_RS06525 0.51 +1.1 458,054 + HMPREF1058_RS06525 0.52 -1.5 458,055 - HMPREF1058_RS06525 0.53 +1.3 458,055 - HMPREF1058_RS06525 0.53 +0.1 458,071 - HMPREF1058_RS06525 0.54 +1.7 458,077 + HMPREF1058_RS06525 0.54 -1.0 458,079 + HMPREF1058_RS06525 0.54 -2.4
Or see this region's nucleotide sequence