Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS20230 and HMPREF1058_RS0119510 are separated by 138 nucleotides HMPREF1058_RS0119510 and HMPREF1058_RS13205 are separated by 56 nucleotides HMPREF1058_RS13205 and HMPREF1058_RS0119515 are separated by 218 nucleotides
HMPREF1058_RS20230: HMPREF1058_RS20230 - DNA-deoxyinosine glycosylase, at 1,556,105 to 1,556,950
_RS20230
HMPREF1058_RS0119510: HMPREF1058_RS0119510 - hypothetical protein, at 1,557,089 to 1,557,337
_RS0119510
HMPREF1058_RS13205: HMPREF1058_RS13205 - DNA primase, at 1,557,394 to 1,557,705
_RS13205
HMPREF1058_RS0119515: HMPREF1058_RS0119515 - hypothetical protein, at 1,557,924 to 1,558,217
_RS0119515
Position (kb) 1557
1558 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1556.095 kb on + strand at 1556.095 kb on + strand at 1556.158 kb on + strand at 1556.193 kb on - strand, within HMPREF1058_RS20230 at 1556.193 kb on - strand, within HMPREF1058_RS20230 at 1556.301 kb on - strand, within HMPREF1058_RS20230 at 1556.331 kb on - strand, within HMPREF1058_RS20230 at 1556.362 kb on - strand, within HMPREF1058_RS20230 at 1556.400 kb on - strand, within HMPREF1058_RS20230 at 1556.400 kb on - strand, within HMPREF1058_RS20230 at 1556.400 kb on - strand, within HMPREF1058_RS20230 at 1556.417 kb on + strand, within HMPREF1058_RS20230 at 1556.418 kb on - strand, within HMPREF1058_RS20230 at 1556.419 kb on + strand, within HMPREF1058_RS20230 at 1556.420 kb on - strand, within HMPREF1058_RS20230 at 1556.455 kb on + strand, within HMPREF1058_RS20230 at 1556.485 kb on + strand, within HMPREF1058_RS20230 at 1556.485 kb on + strand, within HMPREF1058_RS20230 at 1556.486 kb on - strand, within HMPREF1058_RS20230 at 1556.504 kb on - strand, within HMPREF1058_RS20230 at 1556.520 kb on + strand, within HMPREF1058_RS20230 at 1556.521 kb on - strand, within HMPREF1058_RS20230 at 1556.523 kb on + strand, within HMPREF1058_RS20230 at 1556.523 kb on + strand, within HMPREF1058_RS20230 at 1556.523 kb on + strand, within HMPREF1058_RS20230 at 1556.523 kb on + strand, within HMPREF1058_RS20230 at 1556.523 kb on + strand, within HMPREF1058_RS20230 at 1556.524 kb on - strand, within HMPREF1058_RS20230 at 1556.557 kb on + strand, within HMPREF1058_RS20230 at 1556.578 kb on + strand, within HMPREF1058_RS20230 at 1556.578 kb on + strand, within HMPREF1058_RS20230 at 1556.578 kb on + strand, within HMPREF1058_RS20230 at 1556.579 kb on - strand, within HMPREF1058_RS20230 at 1556.614 kb on + strand, within HMPREF1058_RS20230 at 1556.685 kb on - strand at 1556.705 kb on - strand, within HMPREF1058_RS20230 at 1556.714 kb on - strand, within HMPREF1058_RS20230 at 1556.714 kb on - strand, within HMPREF1058_RS20230 at 1556.714 kb on - strand, within HMPREF1058_RS20230 at 1556.714 kb on - strand, within HMPREF1058_RS20230 at 1556.716 kb on - strand, within HMPREF1058_RS20230 at 1556.719 kb on + strand, within HMPREF1058_RS20230 at 1556.722 kb on - strand, within HMPREF1058_RS20230 at 1556.782 kb on - strand, within HMPREF1058_RS20230 at 1556.793 kb on - strand, within HMPREF1058_RS20230 at 1556.804 kb on - strand, within HMPREF1058_RS20230 at 1556.878 kb on + strand at 1556.880 kb on + strand at 1556.881 kb on - strand at 1556.881 kb on - strand at 1556.881 kb on - strand at 1556.922 kb on - strand at 1557.031 kb on - strand at 1557.033 kb on - strand at 1557.044 kb on + strand at 1557.074 kb on - strand at 1557.078 kb on - strand at 1557.121 kb on + strand, within HMPREF1058_RS0119510 at 1557.122 kb on - strand, within HMPREF1058_RS0119510 at 1557.275 kb on - strand, within HMPREF1058_RS0119510 at 1557.290 kb on - strand, within HMPREF1058_RS0119510 at 1557.309 kb on - strand, within HMPREF1058_RS0119510 at 1557.329 kb on + strand at 1557.372 kb on + strand at 1557.373 kb on - strand at 1557.383 kb on + strand at 1557.389 kb on + strand at 1557.448 kb on + strand, within HMPREF1058_RS13205 at 1557.640 kb on + strand, within HMPREF1058_RS13205 at 1557.823 kb on - strand at 1557.883 kb on + strand at 1557.883 kb on + strand at 1557.883 kb on + strand at 1557.883 kb on + strand at 1557.884 kb on - strand at 1557.884 kb on - strand at 1557.890 kb on + strand at 1557.958 kb on - strand, within HMPREF1058_RS0119515 at 1558.012 kb on - strand, within HMPREF1058_RS0119515 at 1558.013 kb on + strand, within HMPREF1058_RS0119515 at 1558.024 kb on - strand, within HMPREF1058_RS0119515 at 1558.024 kb on - strand, within HMPREF1058_RS0119515 at 1558.040 kb on - strand, within HMPREF1058_RS0119515 at 1558.078 kb on + strand, within HMPREF1058_RS0119515 at 1558.154 kb on + strand, within HMPREF1058_RS0119515 at 1558.154 kb on + strand, within HMPREF1058_RS0119515 at 1558.155 kb on - strand, within HMPREF1058_RS0119515 at 1558.155 kb on - strand, within HMPREF1058_RS0119515 at 1558.157 kb on - strand, within HMPREF1058_RS0119515 at 1558.157 kb on - strand, within HMPREF1058_RS0119515 at 1558.157 kb on - strand, within HMPREF1058_RS0119515 at 1558.157 kb on - strand, within HMPREF1058_RS0119515 at 1558.159 kb on - strand, within HMPREF1058_RS0119515 at 1558.211 kb on + strand at 1558.211 kb on + strand at 1558.217 kb on + strand at 1558.217 kb on + strand at 1558.218 kb on - strand at 1558.218 kb on - strand at 1558.218 kb on - strand at 1558.220 kb on - strand at 1558.223 kb on + strand at 1558.319 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 1,556,095 + -0.1 1,556,095 + +2.0 1,556,158 + -0.2 1,556,193 - HMPREF1058_RS20230 0.10 -0.6 1,556,193 - HMPREF1058_RS20230 0.10 -0.3 1,556,301 - HMPREF1058_RS20230 0.23 +0.4 1,556,331 - HMPREF1058_RS20230 0.27 +0.6 1,556,362 - HMPREF1058_RS20230 0.30 -2.0 1,556,400 - HMPREF1058_RS20230 0.35 -1.6 1,556,400 - HMPREF1058_RS20230 0.35 +2.0 1,556,400 - HMPREF1058_RS20230 0.35 -1.1 1,556,417 + HMPREF1058_RS20230 0.37 -0.6 1,556,418 - HMPREF1058_RS20230 0.37 -0.9 1,556,419 + HMPREF1058_RS20230 0.37 -0.6 1,556,420 - HMPREF1058_RS20230 0.37 -0.3 1,556,455 + HMPREF1058_RS20230 0.41 -0.5 1,556,485 + HMPREF1058_RS20230 0.45 +0.9 1,556,485 + HMPREF1058_RS20230 0.45 -1.6 1,556,486 - HMPREF1058_RS20230 0.45 +0.5 1,556,504 - HMPREF1058_RS20230 0.47 +1.1 1,556,520 + HMPREF1058_RS20230 0.49 -0.8 1,556,521 - HMPREF1058_RS20230 0.49 -0.2 1,556,523 + HMPREF1058_RS20230 0.49 -0.3 1,556,523 + HMPREF1058_RS20230 0.49 +1.5 1,556,523 + HMPREF1058_RS20230 0.49 -1.1 1,556,523 + HMPREF1058_RS20230 0.49 +0.6 1,556,523 + HMPREF1058_RS20230 0.49 -0.5 1,556,524 - HMPREF1058_RS20230 0.50 -0.6 1,556,557 + HMPREF1058_RS20230 0.53 +0.1 1,556,578 + HMPREF1058_RS20230 0.56 +0.8 1,556,578 + HMPREF1058_RS20230 0.56 +1.0 1,556,578 + HMPREF1058_RS20230 0.56 -0.9 1,556,579 - HMPREF1058_RS20230 0.56 +0.0 1,556,614 + HMPREF1058_RS20230 0.60 +0.0 1,556,685 - -1.0 1,556,705 - HMPREF1058_RS20230 0.71 +0.3 1,556,714 - HMPREF1058_RS20230 0.72 +0.2 1,556,714 - HMPREF1058_RS20230 0.72 +0.4 1,556,714 - HMPREF1058_RS20230 0.72 -0.3 1,556,714 - HMPREF1058_RS20230 0.72 -0.2 1,556,716 - HMPREF1058_RS20230 0.72 -0.6 1,556,719 + HMPREF1058_RS20230 0.73 -1.4 1,556,722 - HMPREF1058_RS20230 0.73 -0.2 1,556,782 - HMPREF1058_RS20230 0.80 +0.7 1,556,793 - HMPREF1058_RS20230 0.81 -0.3 1,556,804 - HMPREF1058_RS20230 0.83 +0.5 1,556,878 + +0.3 1,556,880 + +0.5 1,556,881 - -1.5 1,556,881 - +0.5 1,556,881 - -1.0 1,556,922 - +0.0 1,557,031 - -0.2 1,557,033 - -1.4 1,557,044 + -0.8 1,557,074 - +0.5 1,557,078 - +0.3 1,557,121 + HMPREF1058_RS0119510 0.13 +0.9 1,557,122 - HMPREF1058_RS0119510 0.13 +1.1 1,557,275 - HMPREF1058_RS0119510 0.75 +0.4 1,557,290 - HMPREF1058_RS0119510 0.81 +0.6 1,557,309 - HMPREF1058_RS0119510 0.88 -0.2 1,557,329 + -0.0 1,557,372 + +1.0 1,557,373 - -0.3 1,557,383 + -1.5 1,557,389 + -1.0 1,557,448 + HMPREF1058_RS13205 0.17 +0.3 1,557,640 + HMPREF1058_RS13205 0.79 -1.2 1,557,823 - -0.1 1,557,883 + +0.8 1,557,883 + -2.0 1,557,883 + +0.5 1,557,883 + +1.1 1,557,884 - -1.0 1,557,884 - +0.3 1,557,890 + +0.3 1,557,958 - HMPREF1058_RS0119515 0.12 +0.6 1,558,012 - HMPREF1058_RS0119515 0.30 -0.5 1,558,013 + HMPREF1058_RS0119515 0.30 +0.3 1,558,024 - HMPREF1058_RS0119515 0.34 +0.5 1,558,024 - HMPREF1058_RS0119515 0.34 +0.0 1,558,040 - HMPREF1058_RS0119515 0.39 +3.1 1,558,078 + HMPREF1058_RS0119515 0.52 -1.6 1,558,154 + HMPREF1058_RS0119515 0.78 +1.1 1,558,154 + HMPREF1058_RS0119515 0.78 -0.2 1,558,155 - HMPREF1058_RS0119515 0.79 -0.3 1,558,155 - HMPREF1058_RS0119515 0.79 +0.0 1,558,157 - HMPREF1058_RS0119515 0.79 +0.2 1,558,157 - HMPREF1058_RS0119515 0.79 +0.3 1,558,157 - HMPREF1058_RS0119515 0.79 -2.0 1,558,157 - HMPREF1058_RS0119515 0.79 -0.4 1,558,159 - HMPREF1058_RS0119515 0.80 -0.3 1,558,211 + +0.5 1,558,211 + -0.5 1,558,217 + -0.6 1,558,217 + +0.6 1,558,218 - -0.7 1,558,218 - -0.7 1,558,218 - -0.5 1,558,220 - +0.4 1,558,223 + -0.1 1,558,319 + +0.9
Or see this region's nucleotide sequence