Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS0119475

Experiment: Galactan from Potato 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Galactan from Potato 2.5 mg/ml (C)
1,437,668	+		HMPREF1058_RS13565	0.50	-0.2
1,437,673	-		HMPREF1058_RS13565	0.51	-0.9
1,437,673	-		HMPREF1058_RS13565	0.51	-0.1
1,437,673	-		HMPREF1058_RS13565	0.51	-0.6
1,437,682	-		HMPREF1058_RS13565	0.51	+0.3
1,437,775	-		HMPREF1058_RS13565	0.57	-1.0
1,437,786	-		HMPREF1058_RS13565	0.58	+0.3
1,437,786	-		HMPREF1058_RS13565	0.58	-0.4
1,437,795	+		HMPREF1058_RS13565	0.58	-0.6
1,437,815	+		HMPREF1058_RS13565	0.60	-0.8
1,437,816	-		HMPREF1058_RS13565	0.60	-0.9
1,437,927	-		HMPREF1058_RS13565	0.66	-1.2
1,437,930	+		HMPREF1058_RS13565	0.67	+0.8
1,437,931	-		HMPREF1058_RS13565	0.67	-0.3
1,437,974	+		HMPREF1058_RS13565	0.69	-0.8
1,437,993	-		HMPREF1058_RS13565	0.71	-0.6
1,438,082	+		HMPREF1058_RS13565	0.76	-1.9
1,438,083	-		HMPREF1058_RS13565	0.76	-0.5
1,438,148	+		HMPREF1058_RS13565	0.80	+0.4
1,438,155	-		HMPREF1058_RS13565	0.81	+2.0
1,438,168	-		HMPREF1058_RS13565	0.81	+0.6
1,438,273	-		HMPREF1058_RS13565	0.88	+0.3
1,438,305	+		HMPREF1058_RS13565	0.90	+0.2
1,438,350	+				-0.8
1,438,397	-				+1.5
1,438,517	+				+0.4
1,438,547	+				-1.7
1,438,548	-				-1.8
1,438,567	+				+0.4
1,438,573	-				-1.2
1,438,602	+				+0.7
1,438,603	-				-1.9
1,438,603	-				+0.0
1,438,606	+				+0.2
1,438,606	+				+1.4
1,438,608	+				-1.2
1,438,644	-				-1.5
1,438,670	-				-1.4
1,438,684	-				-0.6
1,438,708	+		HMPREF1058_RS0119475	0.11	+0.2
1,438,763	+		HMPREF1058_RS0119475	0.22	+1.6
1,438,868	-		HMPREF1058_RS0119475	0.43	-0.3
1,438,936	+		HMPREF1058_RS0119475	0.57	-0.2
1,438,936	+		HMPREF1058_RS0119475	0.57	+2.6
1,438,974	+		HMPREF1058_RS0119475	0.65	-0.3
1,438,975	-				-0.6
1,438,975	-		HMPREF1058_RS0119475	0.65	+1.6
1,439,078	-		HMPREF1058_RS0119475	0.86	-0.1
1,439,078	-		HMPREF1058_RS0119475	0.86	-2.5
1,439,101	+				-0.5
1,439,156	+				+0.2
1,439,157	-				+0.2
1,439,159	-				-0.5
1,439,159	-				-1.3
1,439,206	+				+4.0
1,439,207	-				+0.1
1,439,207	-				+0.3
1,439,218	-				-0.2
1,439,218	-				+2.6
1,439,278	+				+0.0
1,439,278	+				+0.5
1,439,365	+				+0.8
1,439,447	+				-2.2
1,439,447	+				-0.4
1,439,447	+				-0.9
1,439,511	-				-0.0
1,439,514	+				-1.1
1,439,514	+				-1.0
1,439,515	-				-0.5
1,439,792	+		HMPREF1058_RS13560	0.15	-1.0
1,439,795	+		HMPREF1058_RS13560	0.15	+1.6
1,439,927	+		HMPREF1058_RS13560	0.19	+0.3
1,439,957	+		HMPREF1058_RS13560	0.20	+0.4
1,439,983	-		HMPREF1058_RS13560	0.21	-0.5
1,439,999	+		HMPREF1058_RS13560	0.21	-0.2
1,440,000	+		HMPREF1058_RS13560	0.21	-0.2
1,440,020	+		HMPREF1058_RS13560	0.22	-3.1
1,440,020	+		HMPREF1058_RS13560	0.22	-0.3
1,440,021	-		HMPREF1058_RS13560	0.22	-0.3
1,440,042	-		HMPREF1058_RS13560	0.22	+0.0
1,440,118	+				-0.7
1,440,121	+		HMPREF1058_RS13560	0.25	-0.9
1,440,122	-		HMPREF1058_RS13560	0.25	-2.9
1,440,122	-		HMPREF1058_RS13560	0.25	-0.9