Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01085 and HMPREF1058_RS01080 are separated by 73 nucleotides HMPREF1058_RS01080 and HMPREF1058_RS01075 are separated by 205 nucleotides HMPREF1058_RS01075 and HMPREF1058_RS01065 are separated by 653 nucleotides
HMPREF1058_RS01085: HMPREF1058_RS01085 - DUF134 domain-containing protein, at 214,405 to 215,214
_RS01085
HMPREF1058_RS01080: HMPREF1058_RS01080 - hypothetical protein, at 215,288 to 215,593
_RS01080
HMPREF1058_RS01075: HMPREF1058_RS01075 - site-specific integrase, at 215,799 to 217,013
_RS01075
HMPREF1058_RS01065: HMPREF1058_RS01065 - hypothetical protein, at 217,667 to 218,284
_RS01065
Position (kb) 215
216
217
218 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 214.907 kb on - strand, within HMPREF1058_RS01085 at 214.908 kb on + strand, within HMPREF1058_RS01085 at 214.995 kb on - strand, within HMPREF1058_RS01085 at 215.014 kb on - strand, within HMPREF1058_RS01085 at 215.071 kb on - strand, within HMPREF1058_RS01085 at 215.205 kb on + strand at 215.206 kb on - strand at 215.206 kb on - strand at 215.223 kb on - strand at 215.230 kb on - strand at 215.622 kb on + strand at 215.870 kb on - strand at 216.248 kb on + strand, within HMPREF1058_RS01075 at 216.248 kb on + strand, within HMPREF1058_RS01075 at 216.274 kb on - strand, within HMPREF1058_RS01075 at 216.274 kb on - strand, within HMPREF1058_RS01075 at 217.144 kb on + strand at 217.145 kb on - strand at 217.145 kb on - strand at 217.165 kb on + strand at 217.170 kb on - strand at 217.321 kb on - strand at 217.323 kb on + strand at 217.323 kb on + strand at 217.358 kb on - strand at 217.360 kb on - strand at 217.453 kb on - strand at 217.563 kb on + strand at 217.603 kb on - strand at 217.603 kb on - strand at 217.606 kb on - strand at 217.634 kb on - strand at 217.643 kb on + strand at 217.643 kb on + strand at 217.644 kb on - strand at 217.679 kb on - strand at 217.691 kb on - strand at 217.693 kb on + strand at 217.740 kb on - strand, within HMPREF1058_RS01065 at 217.854 kb on + strand, within HMPREF1058_RS01065 at 217.882 kb on - strand, within HMPREF1058_RS01065 at 217.884 kb on - strand, within HMPREF1058_RS01065 at 217.913 kb on - strand, within HMPREF1058_RS01065 at 217.914 kb on + strand, within HMPREF1058_RS01065 at 217.914 kb on + strand, within HMPREF1058_RS01065
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 214,907 - HMPREF1058_RS01085 0.62 +0.3 214,908 + HMPREF1058_RS01085 0.62 -0.0 214,995 - HMPREF1058_RS01085 0.73 +0.3 215,014 - HMPREF1058_RS01085 0.75 -1.8 215,071 - HMPREF1058_RS01085 0.82 +0.7 215,205 + -0.7 215,206 - +1.4 215,206 - -1.5 215,223 - +0.7 215,230 - +1.2 215,622 + -0.3 215,870 - -1.8 216,248 + HMPREF1058_RS01075 0.37 +0.7 216,248 + HMPREF1058_RS01075 0.37 -0.6 216,274 - HMPREF1058_RS01075 0.39 +2.3 216,274 - HMPREF1058_RS01075 0.39 -0.2 217,144 + +1.1 217,145 - -0.0 217,145 - +0.1 217,165 + +1.4 217,170 - -0.0 217,321 - -0.2 217,323 + +3.0 217,323 + +3.0 217,358 - +0.1 217,360 - +0.2 217,453 - -0.8 217,563 + +3.0 217,603 - -0.7 217,603 - -2.1 217,606 - +0.3 217,634 - +0.8 217,643 + -2.3 217,643 + -0.2 217,644 - -0.5 217,679 - -1.0 217,691 - +0.2 217,693 + +0.3 217,740 - HMPREF1058_RS01065 0.12 +0.7 217,854 + HMPREF1058_RS01065 0.30 +0.2 217,882 - HMPREF1058_RS01065 0.35 -0.7 217,884 - HMPREF1058_RS01065 0.35 -1.7 217,913 - HMPREF1058_RS01065 0.40 -1.9 217,914 + HMPREF1058_RS01065 0.40 -2.0 217,914 + HMPREF1058_RS01065 0.40 +0.2
Or see this region's nucleotide sequence