Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00445 and HMPREF1058_RS00440 are separated by 299 nucleotides HMPREF1058_RS00440 and HMPREF1058_RS00435 overlap by 11 nucleotides HMPREF1058_RS00435 and HMPREF1058_RS00430 are separated by 360 nucleotides
HMPREF1058_RS00445: HMPREF1058_RS00445 - 50S ribosomal protein L13, at 71,498 to 71,959
_RS00445
HMPREF1058_RS00440: HMPREF1058_RS00440 - hypothetical protein, at 72,259 to 72,504
_RS00440
HMPREF1058_RS00435: HMPREF1058_RS00435 - zeta toxin family protein, at 72,494 to 73,069
_RS00435
HMPREF1058_RS00430: HMPREF1058_RS00430 - DUF4488 domain-containing protein, at 73,430 to 73,924
_RS00430
Position (kb) 72
73
74 Strain fitness (log2 ratio) -2
-1
0
1
2 at 72.155 kb on + strand at 72.199 kb on + strand at 72.208 kb on - strand at 72.234 kb on + strand at 72.235 kb on - strand at 72.239 kb on - strand at 72.239 kb on - strand at 72.240 kb on + strand at 72.295 kb on - strand, within HMPREF1058_RS00440 at 72.295 kb on - strand, within HMPREF1058_RS00440 at 72.536 kb on - strand at 72.637 kb on - strand, within HMPREF1058_RS00435 at 72.696 kb on - strand, within HMPREF1058_RS00435 at 72.773 kb on - strand, within HMPREF1058_RS00435 at 72.785 kb on - strand, within HMPREF1058_RS00435 at 72.823 kb on - strand, within HMPREF1058_RS00435 at 72.823 kb on - strand, within HMPREF1058_RS00435 at 72.921 kb on - strand, within HMPREF1058_RS00435 at 73.050 kb on - strand at 73.053 kb on - strand at 73.143 kb on + strand at 73.199 kb on + strand at 73.218 kb on - strand at 73.221 kb on + strand at 73.240 kb on + strand at 73.241 kb on - strand at 73.278 kb on - strand at 73.280 kb on + strand at 73.285 kb on - strand at 73.315 kb on + strand at 73.315 kb on + strand at 73.316 kb on - strand at 73.321 kb on + strand at 73.336 kb on + strand at 73.337 kb on - strand at 73.346 kb on + strand at 73.348 kb on + strand at 73.348 kb on + strand at 73.348 kb on + strand at 73.348 kb on + strand at 73.348 kb on + strand at 73.349 kb on - strand at 73.349 kb on - strand at 73.349 kb on - strand at 73.353 kb on - strand at 73.400 kb on + strand at 73.411 kb on + strand at 73.411 kb on + strand at 73.431 kb on + strand at 73.431 kb on + strand at 73.488 kb on + strand, within HMPREF1058_RS00430 at 73.489 kb on - strand, within HMPREF1058_RS00430 at 73.636 kb on + strand, within HMPREF1058_RS00430 at 73.681 kb on + strand, within HMPREF1058_RS00430 at 73.682 kb on - strand, within HMPREF1058_RS00430 at 73.712 kb on - strand, within HMPREF1058_RS00430 at 73.712 kb on - strand, within HMPREF1058_RS00430 at 73.793 kb on + strand, within HMPREF1058_RS00430 at 73.798 kb on - strand, within HMPREF1058_RS00430 at 73.892 kb on + strand at 73.930 kb on + strand at 73.931 kb on - strand at 73.933 kb on - strand at 73.933 kb on - strand at 73.934 kb on + strand at 73.935 kb on - strand at 73.935 kb on - strand at 73.938 kb on + strand at 73.939 kb on - strand at 73.939 kb on - strand at 74.052 kb on + strand at 74.052 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 72,155 + -0.8 72,199 + -1.7 72,208 - +0.5 72,234 + -0.2 72,235 - +1.3 72,239 - +0.0 72,239 - +1.0 72,240 + -1.5 72,295 - HMPREF1058_RS00440 0.15 -0.4 72,295 - HMPREF1058_RS00440 0.15 -0.4 72,536 - +0.2 72,637 - HMPREF1058_RS00435 0.25 +0.2 72,696 - HMPREF1058_RS00435 0.35 +1.0 72,773 - HMPREF1058_RS00435 0.48 +1.4 72,785 - HMPREF1058_RS00435 0.51 -0.1 72,823 - HMPREF1058_RS00435 0.57 +0.8 72,823 - HMPREF1058_RS00435 0.57 +1.4 72,921 - HMPREF1058_RS00435 0.74 +0.4 73,050 - +1.2 73,053 - +0.9 73,143 + +0.3 73,199 + -1.8 73,218 - +1.1 73,221 + -0.2 73,240 + -1.2 73,241 - +1.7 73,278 - +0.2 73,280 + +0.5 73,285 - +0.2 73,315 + -0.6 73,315 + -0.4 73,316 - +0.7 73,321 + +0.4 73,336 + -0.7 73,337 - +1.2 73,346 + +1.2 73,348 + -0.8 73,348 + -2.5 73,348 + +0.9 73,348 + +0.9 73,348 + +0.5 73,349 - +1.0 73,349 - +1.0 73,349 - -0.5 73,353 - +0.7 73,400 + -0.6 73,411 + -0.0 73,411 + -1.2 73,431 + -0.3 73,431 + +0.0 73,488 + HMPREF1058_RS00430 0.12 -0.8 73,489 - HMPREF1058_RS00430 0.12 +0.1 73,636 + HMPREF1058_RS00430 0.42 -1.1 73,681 + HMPREF1058_RS00430 0.51 -0.5 73,682 - HMPREF1058_RS00430 0.51 +1.6 73,712 - HMPREF1058_RS00430 0.57 +0.6 73,712 - HMPREF1058_RS00430 0.57 -0.5 73,793 + HMPREF1058_RS00430 0.73 -0.0 73,798 - HMPREF1058_RS00430 0.74 +0.6 73,892 + -1.2 73,930 + -0.9 73,931 - -0.9 73,933 - +0.3 73,933 - +0.4 73,934 + -1.3 73,935 - -0.9 73,935 - -1.5 73,938 + -0.6 73,939 - -0.8 73,939 - +0.4 74,052 + +0.1 74,052 + +1.9
Or see this region's nucleotide sequence