Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00205 and HMPREF1058_RS00200 overlap by 14 nucleotides HMPREF1058_RS00200 and HMPREF1058_RS00195 are separated by 2 nucleotides HMPREF1058_RS00195 and HMPREF1058_RS00190 are separated by 11 nucleotides
HMPREF1058_RS00205: HMPREF1058_RS00205 - cation:proton antiporter, at 32,680 to 34,827
_RS00205
HMPREF1058_RS00200: HMPREF1058_RS00200 - tRNA threonylcarbamoyladenosine dehydratase, at 34,814 to 35,536
_RS00200
HMPREF1058_RS00195: HMPREF1058_RS00195 - ABC transporter ATP-binding protein, at 35,539 to 36,198
_RS00195
HMPREF1058_RS00190: HMPREF1058_RS00190 - FimB/Mfa2 family fimbrial subunit, at 36,210 to 37,163
_RS00190
Position (kb) 34
35
36 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 33.837 kb on + strand, within HMPREF1058_RS00205 at 33.837 kb on + strand, within HMPREF1058_RS00205 at 33.839 kb on + strand, within HMPREF1058_RS00205 at 33.839 kb on + strand, within HMPREF1058_RS00205 at 33.959 kb on + strand, within HMPREF1058_RS00205 at 34.047 kb on + strand, within HMPREF1058_RS00205 at 34.047 kb on + strand, within HMPREF1058_RS00205 at 34.167 kb on + strand, within HMPREF1058_RS00205 at 34.189 kb on + strand, within HMPREF1058_RS00205 at 34.211 kb on + strand, within HMPREF1058_RS00205 at 34.310 kb on + strand, within HMPREF1058_RS00205 at 34.326 kb on + strand, within HMPREF1058_RS00205 at 34.458 kb on + strand, within HMPREF1058_RS00205 at 34.768 kb on + strand at 34.830 kb on + strand at 34.908 kb on + strand, within HMPREF1058_RS00200 at 35.213 kb on + strand, within HMPREF1058_RS00200 at 35.218 kb on + strand, within HMPREF1058_RS00200 at 35.220 kb on + strand, within HMPREF1058_RS00200 at 35.222 kb on + strand, within HMPREF1058_RS00200 at 35.224 kb on + strand, within HMPREF1058_RS00200 at 35.321 kb on + strand, within HMPREF1058_RS00200 at 35.321 kb on + strand, within HMPREF1058_RS00200 at 35.321 kb on + strand, within HMPREF1058_RS00200 at 35.401 kb on + strand, within HMPREF1058_RS00200 at 35.480 kb on + strand at 35.482 kb on + strand at 36.223 kb on - strand at 36.295 kb on - strand at 36.295 kb on - strand at 36.305 kb on + strand at 36.347 kb on + strand, within HMPREF1058_RS00190 at 36.373 kb on - strand, within HMPREF1058_RS00190 at 36.387 kb on + strand, within HMPREF1058_RS00190 at 36.410 kb on + strand, within HMPREF1058_RS00190
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 33,837 + HMPREF1058_RS00205 0.54 -2.2 33,837 + HMPREF1058_RS00205 0.54 -2.4 33,839 + HMPREF1058_RS00205 0.54 -2.0 33,839 + HMPREF1058_RS00205 0.54 -2.7 33,959 + HMPREF1058_RS00205 0.60 +0.8 34,047 + HMPREF1058_RS00205 0.64 +0.2 34,047 + HMPREF1058_RS00205 0.64 -1.6 34,167 + HMPREF1058_RS00205 0.69 -1.4 34,189 + HMPREF1058_RS00205 0.70 -1.1 34,211 + HMPREF1058_RS00205 0.71 -1.6 34,310 + HMPREF1058_RS00205 0.76 -1.8 34,326 + HMPREF1058_RS00205 0.77 -2.3 34,458 + HMPREF1058_RS00205 0.83 -2.7 34,768 + -0.1 34,830 + +1.1 34,908 + HMPREF1058_RS00200 0.13 +0.8 35,213 + HMPREF1058_RS00200 0.55 -0.2 35,218 + HMPREF1058_RS00200 0.56 +1.4 35,220 + HMPREF1058_RS00200 0.56 +1.2 35,222 + HMPREF1058_RS00200 0.56 +3.2 35,224 + HMPREF1058_RS00200 0.57 +0.5 35,321 + HMPREF1058_RS00200 0.70 +0.4 35,321 + HMPREF1058_RS00200 0.70 +1.0 35,321 + HMPREF1058_RS00200 0.70 +0.7 35,401 + HMPREF1058_RS00200 0.81 -0.8 35,480 + +0.1 35,482 + +0.7 36,223 - -0.4 36,295 - +0.8 36,295 - +0.3 36,305 + -0.8 36,347 + HMPREF1058_RS00190 0.14 -2.2 36,373 - HMPREF1058_RS00190 0.17 -0.7 36,387 + HMPREF1058_RS00190 0.19 -0.9 36,410 + HMPREF1058_RS00190 0.21 +0.9
Or see this region's nucleotide sequence