Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00145 and HMPREF1058_RS00140 overlap by 1 nucleotides HMPREF1058_RS00140 and HMPREF1058_RS00135 are separated by 708 nucleotides
HMPREF1058_RS00145: HMPREF1058_RS00145 - ROK family protein, at 46,666 to 47,637
_RS00145
HMPREF1058_RS00140: HMPREF1058_RS00140 - L-rhamnose mutarotase, at 47,637 to 48,026
_RS00140
HMPREF1058_RS00135: HMPREF1058_RS00135 - isoaspartyl peptidase/L-asparaginase, at 48,735 to 49,721
_RS00135
Position (kb) 47
48
49 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 47.395 kb on - strand, within HMPREF1058_RS00145 at 47.660 kb on + strand at 47.712 kb on - strand, within HMPREF1058_RS00140 at 47.745 kb on - strand, within HMPREF1058_RS00140 at 47.793 kb on - strand, within HMPREF1058_RS00140 at 47.826 kb on + strand at 47.826 kb on + strand, within HMPREF1058_RS00140 at 47.850 kb on - strand, within HMPREF1058_RS00140 at 47.907 kb on - strand, within HMPREF1058_RS00140 at 47.937 kb on + strand, within HMPREF1058_RS00140 at 47.937 kb on + strand, within HMPREF1058_RS00140 at 47.938 kb on - strand, within HMPREF1058_RS00140 at 47.938 kb on - strand, within HMPREF1058_RS00140 at 47.938 kb on - strand, within HMPREF1058_RS00140 at 47.939 kb on + strand, within HMPREF1058_RS00140 at 47.939 kb on + strand, within HMPREF1058_RS00140 at 47.939 kb on + strand, within HMPREF1058_RS00140 at 47.939 kb on + strand, within HMPREF1058_RS00140 at 47.940 kb on - strand, within HMPREF1058_RS00140 at 47.940 kb on - strand, within HMPREF1058_RS00140 at 48.012 kb on + strand at 48.016 kb on + strand at 48.018 kb on + strand at 48.018 kb on + strand at 48.019 kb on - strand at 48.024 kb on + strand at 48.036 kb on + strand at 48.037 kb on - strand at 48.047 kb on - strand at 48.047 kb on - strand at 48.058 kb on - strand at 48.085 kb on + strand at 48.086 kb on - strand at 48.086 kb on - strand at 48.097 kb on - strand at 48.098 kb on + strand at 48.119 kb on - strand at 48.262 kb on - strand at 48.266 kb on - strand at 48.277 kb on - strand at 48.303 kb on - strand at 48.449 kb on - strand at 48.467 kb on + strand at 48.467 kb on + strand at 48.467 kb on + strand at 48.467 kb on + strand at 48.467 kb on + strand at 48.468 kb on - strand at 48.468 kb on - strand at 48.468 kb on - strand at 48.468 kb on - strand at 48.468 kb on - strand at 48.524 kb on + strand at 48.601 kb on - strand at 48.656 kb on + strand at 48.656 kb on + strand at 48.656 kb on + strand at 48.668 kb on + strand at 48.699 kb on - strand at 48.711 kb on + strand at 48.712 kb on - strand at 48.728 kb on + strand at 48.728 kb on + strand at 48.734 kb on + strand at 48.745 kb on + strand at 48.766 kb on + strand at 48.804 kb on + strand at 48.877 kb on - strand, within HMPREF1058_RS00135 at 48.877 kb on - strand, within HMPREF1058_RS00135 at 48.918 kb on - strand, within HMPREF1058_RS00135 at 48.918 kb on - strand, within HMPREF1058_RS00135 at 48.920 kb on - strand, within HMPREF1058_RS00135 at 48.980 kb on + strand, within HMPREF1058_RS00135
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 47,395 - HMPREF1058_RS00145 0.75 -1.2 47,660 + +1.5 47,712 - HMPREF1058_RS00140 0.19 +0.5 47,745 - HMPREF1058_RS00140 0.28 +1.5 47,793 - HMPREF1058_RS00140 0.40 +0.3 47,826 + +1.4 47,826 + HMPREF1058_RS00140 0.48 +1.2 47,850 - HMPREF1058_RS00140 0.55 +1.6 47,907 - HMPREF1058_RS00140 0.69 +1.1 47,937 + HMPREF1058_RS00140 0.77 +1.5 47,937 + HMPREF1058_RS00140 0.77 +0.6 47,938 - HMPREF1058_RS00140 0.77 +0.8 47,938 - HMPREF1058_RS00140 0.77 -1.0 47,938 - HMPREF1058_RS00140 0.77 -1.8 47,939 + HMPREF1058_RS00140 0.77 +0.6 47,939 + HMPREF1058_RS00140 0.77 -0.6 47,939 + HMPREF1058_RS00140 0.77 +0.3 47,939 + HMPREF1058_RS00140 0.77 +1.1 47,940 - HMPREF1058_RS00140 0.78 +0.1 47,940 - HMPREF1058_RS00140 0.78 +0.5 48,012 + +0.4 48,016 + +1.4 48,018 + +0.2 48,018 + +1.4 48,019 - -0.6 48,024 + +1.3 48,036 + +0.1 48,037 - +0.6 48,047 - +0.5 48,047 - -0.7 48,058 - +0.9 48,085 + +0.4 48,086 - +1.0 48,086 - +0.5 48,097 - +0.6 48,098 + -0.4 48,119 - +0.5 48,262 - +1.5 48,266 - +0.3 48,277 - +1.0 48,303 - +1.3 48,449 - -0.0 48,467 + +0.6 48,467 + +0.2 48,467 + +0.0 48,467 + -0.9 48,467 + -0.4 48,468 - -0.1 48,468 - +0.0 48,468 - -0.3 48,468 - +0.9 48,468 - +1.6 48,524 + +0.4 48,601 - +0.0 48,656 + +0.0 48,656 + +0.6 48,656 + +0.2 48,668 + +0.2 48,699 - +0.3 48,711 + +0.1 48,712 - -4.0 48,728 + +1.3 48,728 + -0.1 48,734 + -0.7 48,745 + +0.5 48,766 + +0.9 48,804 + -1.6 48,877 - HMPREF1058_RS00135 0.14 -0.7 48,877 - HMPREF1058_RS00135 0.14 +0.5 48,918 - HMPREF1058_RS00135 0.19 +2.4 48,918 - HMPREF1058_RS00135 0.19 -0.3 48,920 - HMPREF1058_RS00135 0.19 -0.5 48,980 + HMPREF1058_RS00135 0.25 -0.0
Or see this region's nucleotide sequence