Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00130 and HMPREF1058_RS00125 are separated by 16 nucleotides HMPREF1058_RS00125 and HMPREF1058_RS00120 are separated by 15 nucleotides HMPREF1058_RS00120 and HMPREF1058_RS00115 overlap by 4 nucleotides
HMPREF1058_RS00130: HMPREF1058_RS00130 - glycosyl hydrolase family 2, at 50,672 to 53,434
_RS00130
HMPREF1058_RS00125: HMPREF1058_RS00125 - glycoside hydrolase family 28 protein, at 53,451 to 54,875
_RS00125
HMPREF1058_RS00120: HMPREF1058_RS00120 - hypothetical protein, at 54,891 to 55,694
_RS00120
HMPREF1058_RS00115: HMPREF1058_RS00115 - DUF4450 domain-containing protein, at 55,691 to 56,389
_RS00115
Position (kb) 53
54
55 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 52.586 kb on + strand, within HMPREF1058_RS00130 at 52.674 kb on - strand, within HMPREF1058_RS00130 at 52.674 kb on - strand, within HMPREF1058_RS00130 at 52.674 kb on - strand, within HMPREF1058_RS00130 at 52.727 kb on - strand, within HMPREF1058_RS00130 at 52.791 kb on + strand, within HMPREF1058_RS00130 at 52.792 kb on - strand, within HMPREF1058_RS00130 at 52.842 kb on - strand, within HMPREF1058_RS00130 at 52.843 kb on + strand, within HMPREF1058_RS00130 at 52.843 kb on + strand at 52.843 kb on + strand, within HMPREF1058_RS00130 at 52.845 kb on + strand, within HMPREF1058_RS00130 at 52.845 kb on + strand, within HMPREF1058_RS00130 at 52.846 kb on - strand, within HMPREF1058_RS00130 at 52.846 kb on - strand, within HMPREF1058_RS00130 at 52.847 kb on + strand, within HMPREF1058_RS00130 at 52.847 kb on + strand, within HMPREF1058_RS00130 at 52.848 kb on - strand, within HMPREF1058_RS00130 at 52.890 kb on - strand, within HMPREF1058_RS00130 at 52.946 kb on - strand, within HMPREF1058_RS00130 at 52.947 kb on + strand, within HMPREF1058_RS00130 at 52.948 kb on - strand, within HMPREF1058_RS00130 at 52.964 kb on + strand, within HMPREF1058_RS00130 at 53.009 kb on + strand, within HMPREF1058_RS00130 at 53.041 kb on - strand, within HMPREF1058_RS00130 at 53.041 kb on - strand, within HMPREF1058_RS00130 at 53.054 kb on - strand, within HMPREF1058_RS00130 at 53.077 kb on + strand, within HMPREF1058_RS00130 at 53.122 kb on + strand, within HMPREF1058_RS00130 at 53.123 kb on - strand, within HMPREF1058_RS00130 at 53.141 kb on - strand, within HMPREF1058_RS00130 at 53.174 kb on - strand at 53.232 kb on + strand at 53.237 kb on - strand at 53.290 kb on - strand at 53.498 kb on - strand at 53.565 kb on + strand at 53.565 kb on + strand at 53.693 kb on + strand, within HMPREF1058_RS00125 at 53.710 kb on + strand, within HMPREF1058_RS00125 at 53.711 kb on - strand, within HMPREF1058_RS00125 at 53.715 kb on - strand, within HMPREF1058_RS00125 at 53.933 kb on + strand, within HMPREF1058_RS00125 at 54.009 kb on + strand, within HMPREF1058_RS00125 at 54.159 kb on + strand, within HMPREF1058_RS00125 at 54.273 kb on + strand, within HMPREF1058_RS00125 at 54.307 kb on - strand, within HMPREF1058_RS00125 at 54.331 kb on - strand, within HMPREF1058_RS00125 at 54.524 kb on + strand, within HMPREF1058_RS00125 at 54.524 kb on + strand, within HMPREF1058_RS00125 at 54.646 kb on - strand, within HMPREF1058_RS00125 at 54.648 kb on - strand, within HMPREF1058_RS00125 at 54.649 kb on + strand, within HMPREF1058_RS00125 at 54.650 kb on - strand, within HMPREF1058_RS00125 at 54.657 kb on + strand, within HMPREF1058_RS00125 at 54.657 kb on + strand, within HMPREF1058_RS00125 at 54.657 kb on + strand, within HMPREF1058_RS00125 at 54.658 kb on - strand, within HMPREF1058_RS00125 at 54.660 kb on - strand, within HMPREF1058_RS00125 at 54.660 kb on - strand, within HMPREF1058_RS00125 at 54.682 kb on + strand, within HMPREF1058_RS00125 at 54.709 kb on + strand, within HMPREF1058_RS00125 at 54.710 kb on - strand, within HMPREF1058_RS00125 at 54.777 kb on - strand at 54.850 kb on - strand at 54.862 kb on - strand at 54.862 kb on - strand at 54.892 kb on + strand at 54.892 kb on + strand at 54.907 kb on - strand at 54.907 kb on - strand at 54.921 kb on + strand at 54.940 kb on + strand at 54.941 kb on - strand at 54.941 kb on - strand at 54.948 kb on - strand at 54.948 kb on - strand at 55.063 kb on - strand, within HMPREF1058_RS00120 at 55.106 kb on - strand, within HMPREF1058_RS00120 at 55.151 kb on - strand, within HMPREF1058_RS00120 at 55.212 kb on - strand, within HMPREF1058_RS00120 at 55.547 kb on + strand, within HMPREF1058_RS00120 at 55.548 kb on - strand, within HMPREF1058_RS00120 at 55.548 kb on - strand, within HMPREF1058_RS00120 at 55.591 kb on - strand, within HMPREF1058_RS00120 at 55.676 kb on - strand at 55.747 kb on + strand at 55.806 kb on - strand, within HMPREF1058_RS00115 at 55.873 kb on + strand, within HMPREF1058_RS00115
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 52,586 + HMPREF1058_RS00130 0.69 -1.6 52,674 - HMPREF1058_RS00130 0.72 +0.3 52,674 - HMPREF1058_RS00130 0.72 -1.0 52,674 - HMPREF1058_RS00130 0.72 -0.9 52,727 - HMPREF1058_RS00130 0.74 -0.6 52,791 + HMPREF1058_RS00130 0.77 -2.2 52,792 - HMPREF1058_RS00130 0.77 -0.6 52,842 - HMPREF1058_RS00130 0.79 +0.5 52,843 + HMPREF1058_RS00130 0.79 -0.9 52,843 + -0.2 52,843 + HMPREF1058_RS00130 0.79 +0.2 52,845 + HMPREF1058_RS00130 0.79 +0.2 52,845 + HMPREF1058_RS00130 0.79 -2.5 52,846 - HMPREF1058_RS00130 0.79 -0.5 52,846 - HMPREF1058_RS00130 0.79 -0.6 52,847 + HMPREF1058_RS00130 0.79 +0.3 52,847 + HMPREF1058_RS00130 0.79 -1.9 52,848 - HMPREF1058_RS00130 0.79 -0.3 52,890 - HMPREF1058_RS00130 0.80 -2.0 52,946 - HMPREF1058_RS00130 0.82 -1.7 52,947 + HMPREF1058_RS00130 0.82 +2.4 52,948 - HMPREF1058_RS00130 0.82 -0.6 52,964 + HMPREF1058_RS00130 0.83 -1.3 53,009 + HMPREF1058_RS00130 0.85 -1.6 53,041 - HMPREF1058_RS00130 0.86 -0.5 53,041 - HMPREF1058_RS00130 0.86 -0.6 53,054 - HMPREF1058_RS00130 0.86 -1.0 53,077 + HMPREF1058_RS00130 0.87 -1.6 53,122 + HMPREF1058_RS00130 0.89 -0.8 53,123 - HMPREF1058_RS00130 0.89 -0.6 53,141 - HMPREF1058_RS00130 0.89 +0.2 53,174 - +0.1 53,232 + +0.3 53,237 - +0.6 53,290 - +1.1 53,498 - -0.4 53,565 + +0.9 53,565 + -0.1 53,693 + HMPREF1058_RS00125 0.17 -0.4 53,710 + HMPREF1058_RS00125 0.18 +0.4 53,711 - HMPREF1058_RS00125 0.18 -0.9 53,715 - HMPREF1058_RS00125 0.19 -2.0 53,933 + HMPREF1058_RS00125 0.34 -3.1 54,009 + HMPREF1058_RS00125 0.39 +1.6 54,159 + HMPREF1058_RS00125 0.50 -0.2 54,273 + HMPREF1058_RS00125 0.58 -0.9 54,307 - HMPREF1058_RS00125 0.60 +0.3 54,331 - HMPREF1058_RS00125 0.62 -1.4 54,524 + HMPREF1058_RS00125 0.75 -2.3 54,524 + HMPREF1058_RS00125 0.75 -0.9 54,646 - HMPREF1058_RS00125 0.84 +0.8 54,648 - HMPREF1058_RS00125 0.84 -1.0 54,649 + HMPREF1058_RS00125 0.84 -1.3 54,650 - HMPREF1058_RS00125 0.84 -0.6 54,657 + HMPREF1058_RS00125 0.85 -0.7 54,657 + HMPREF1058_RS00125 0.85 +0.2 54,657 + HMPREF1058_RS00125 0.85 +0.8 54,658 - HMPREF1058_RS00125 0.85 +1.4 54,660 - HMPREF1058_RS00125 0.85 +0.4 54,660 - HMPREF1058_RS00125 0.85 -0.3 54,682 + HMPREF1058_RS00125 0.86 -0.8 54,709 + HMPREF1058_RS00125 0.88 +0.6 54,710 - HMPREF1058_RS00125 0.88 +0.5 54,777 - -1.3 54,850 - -0.2 54,862 - -0.3 54,862 - -0.7 54,892 + -0.4 54,892 + -0.9 54,907 - -0.9 54,907 - -0.7 54,921 + -0.2 54,940 + -1.6 54,941 - +1.0 54,941 - -1.2 54,948 - +0.1 54,948 - -0.3 55,063 - HMPREF1058_RS00120 0.21 -1.2 55,106 - HMPREF1058_RS00120 0.27 -2.4 55,151 - HMPREF1058_RS00120 0.32 -0.7 55,212 - HMPREF1058_RS00120 0.40 +0.5 55,547 + HMPREF1058_RS00120 0.82 -0.7 55,548 - HMPREF1058_RS00120 0.82 +1.2 55,548 - HMPREF1058_RS00120 0.82 -0.2 55,591 - HMPREF1058_RS00120 0.87 -0.8 55,676 - -0.9 55,747 + +0.1 55,806 - HMPREF1058_RS00115 0.16 +2.5 55,873 + HMPREF1058_RS00115 0.26 -2.8
Or see this region's nucleotide sequence