Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00120 and HMPREF1058_RS00115 overlap by 4 nucleotides HMPREF1058_RS00115 and HMPREF1058_RS00110 overlap by 23 nucleotides HMPREF1058_RS00110 and HMPREF1058_RS00105 are separated by 17 nucleotides
HMPREF1058_RS00120: HMPREF1058_RS00120 - hypothetical protein, at 54,891 to 55,694
_RS00120
HMPREF1058_RS00115: HMPREF1058_RS00115 - DUF4450 domain-containing protein, at 55,691 to 56,389
_RS00115
HMPREF1058_RS00110: HMPREF1058_RS00110 - right-handed parallel beta-helix repeat-containing protein, at 56,367 to 57,851
_RS00110
HMPREF1058_RS00105: HMPREF1058_RS00105 - rhamnogalacturonan acetylesterase, at 57,869 to 59,143
_RS00105
Position (kb) 56
57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 55.547 kb on + strand, within HMPREF1058_RS00120 at 55.548 kb on - strand, within HMPREF1058_RS00120 at 55.548 kb on - strand, within HMPREF1058_RS00120 at 55.591 kb on - strand, within HMPREF1058_RS00120 at 55.676 kb on - strand at 55.747 kb on + strand at 55.806 kb on - strand, within HMPREF1058_RS00115 at 55.873 kb on + strand, within HMPREF1058_RS00115 at 55.953 kb on + strand, within HMPREF1058_RS00115 at 55.953 kb on + strand, within HMPREF1058_RS00115 at 55.954 kb on - strand at 55.960 kb on + strand, within HMPREF1058_RS00115 at 56.117 kb on - strand, within HMPREF1058_RS00115 at 56.125 kb on + strand, within HMPREF1058_RS00115 at 56.145 kb on - strand, within HMPREF1058_RS00115 at 56.145 kb on - strand, within HMPREF1058_RS00115 at 56.145 kb on - strand, within HMPREF1058_RS00115 at 56.370 kb on + strand at 56.390 kb on - strand at 56.448 kb on + strand at 56.512 kb on - strand at 56.583 kb on - strand, within HMPREF1058_RS00110 at 56.622 kb on + strand, within HMPREF1058_RS00110 at 56.622 kb on + strand, within HMPREF1058_RS00110 at 56.727 kb on - strand, within HMPREF1058_RS00110 at 56.732 kb on - strand, within HMPREF1058_RS00110 at 56.732 kb on - strand, within HMPREF1058_RS00110 at 56.735 kb on + strand, within HMPREF1058_RS00110 at 56.735 kb on + strand, within HMPREF1058_RS00110 at 56.735 kb on + strand, within HMPREF1058_RS00110 at 56.736 kb on - strand, within HMPREF1058_RS00110 at 56.736 kb on - strand, within HMPREF1058_RS00110 at 56.806 kb on + strand, within HMPREF1058_RS00110 at 56.887 kb on + strand, within HMPREF1058_RS00110 at 57.057 kb on + strand, within HMPREF1058_RS00110 at 57.104 kb on + strand, within HMPREF1058_RS00110 at 57.138 kb on - strand, within HMPREF1058_RS00110 at 57.165 kb on - strand, within HMPREF1058_RS00110 at 57.165 kb on - strand, within HMPREF1058_RS00110 at 57.178 kb on + strand, within HMPREF1058_RS00110 at 57.234 kb on + strand, within HMPREF1058_RS00110 at 57.237 kb on - strand, within HMPREF1058_RS00110 at 57.237 kb on - strand, within HMPREF1058_RS00110 at 57.260 kb on + strand, within HMPREF1058_RS00110 at 57.341 kb on + strand, within HMPREF1058_RS00110 at 57.342 kb on - strand, within HMPREF1058_RS00110 at 57.375 kb on - strand, within HMPREF1058_RS00110 at 57.389 kb on + strand, within HMPREF1058_RS00110 at 57.477 kb on + strand, within HMPREF1058_RS00110 at 57.478 kb on - strand, within HMPREF1058_RS00110 at 57.531 kb on + strand, within HMPREF1058_RS00110 at 57.536 kb on + strand, within HMPREF1058_RS00110 at 57.810 kb on + strand at 57.811 kb on - strand at 57.831 kb on + strand at 57.831 kb on + strand at 57.831 kb on + strand at 57.835 kb on - strand at 57.860 kb on - strand at 57.871 kb on - strand at 57.989 kb on - strand at 58.022 kb on - strand, within HMPREF1058_RS00105 at 58.064 kb on - strand, within HMPREF1058_RS00105 at 58.116 kb on - strand, within HMPREF1058_RS00105 at 58.116 kb on - strand, within HMPREF1058_RS00105 at 58.358 kb on - strand, within HMPREF1058_RS00105 at 58.368 kb on + strand, within HMPREF1058_RS00105 at 58.368 kb on + strand, within HMPREF1058_RS00105 at 58.369 kb on - strand, within HMPREF1058_RS00105 at 58.513 kb on - strand, within HMPREF1058_RS00105 at 58.592 kb on + strand, within HMPREF1058_RS00105 at 58.633 kb on + strand, within HMPREF1058_RS00105 at 58.634 kb on - strand, within HMPREF1058_RS00105 at 58.634 kb on - strand, within HMPREF1058_RS00105 at 58.693 kb on + strand, within HMPREF1058_RS00105 at 58.762 kb on + strand, within HMPREF1058_RS00105 at 58.792 kb on + strand, within HMPREF1058_RS00105
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 55,547 + HMPREF1058_RS00120 0.82 -0.7 55,548 - HMPREF1058_RS00120 0.82 +1.2 55,548 - HMPREF1058_RS00120 0.82 -0.2 55,591 - HMPREF1058_RS00120 0.87 -0.8 55,676 - -0.9 55,747 + +0.1 55,806 - HMPREF1058_RS00115 0.16 +2.5 55,873 + HMPREF1058_RS00115 0.26 -2.8 55,953 + HMPREF1058_RS00115 0.37 -1.7 55,953 + HMPREF1058_RS00115 0.37 -0.9 55,954 - -0.2 55,960 + HMPREF1058_RS00115 0.38 +0.5 56,117 - HMPREF1058_RS00115 0.61 +0.1 56,125 + HMPREF1058_RS00115 0.62 -0.3 56,145 - HMPREF1058_RS00115 0.65 +0.6 56,145 - HMPREF1058_RS00115 0.65 -1.0 56,145 - HMPREF1058_RS00115 0.65 -1.7 56,370 + -0.3 56,390 - -0.7 56,448 + +0.5 56,512 - -0.3 56,583 - HMPREF1058_RS00110 0.15 -1.2 56,622 + HMPREF1058_RS00110 0.17 -0.2 56,622 + HMPREF1058_RS00110 0.17 -0.5 56,727 - HMPREF1058_RS00110 0.24 +0.8 56,732 - HMPREF1058_RS00110 0.25 +0.4 56,732 - HMPREF1058_RS00110 0.25 -2.4 56,735 + HMPREF1058_RS00110 0.25 -0.8 56,735 + HMPREF1058_RS00110 0.25 +0.6 56,735 + HMPREF1058_RS00110 0.25 +0.8 56,736 - HMPREF1058_RS00110 0.25 -0.8 56,736 - HMPREF1058_RS00110 0.25 +0.8 56,806 + HMPREF1058_RS00110 0.30 -0.1 56,887 + HMPREF1058_RS00110 0.35 -2.9 57,057 + HMPREF1058_RS00110 0.46 -0.9 57,104 + HMPREF1058_RS00110 0.50 -0.4 57,138 - HMPREF1058_RS00110 0.52 -2.3 57,165 - HMPREF1058_RS00110 0.54 +0.1 57,165 - HMPREF1058_RS00110 0.54 -0.2 57,178 + HMPREF1058_RS00110 0.55 +0.4 57,234 + HMPREF1058_RS00110 0.58 +0.7 57,237 - HMPREF1058_RS00110 0.59 -0.5 57,237 - HMPREF1058_RS00110 0.59 +0.9 57,260 + HMPREF1058_RS00110 0.60 -0.2 57,341 + HMPREF1058_RS00110 0.66 +1.6 57,342 - HMPREF1058_RS00110 0.66 -1.0 57,375 - HMPREF1058_RS00110 0.68 -0.4 57,389 + HMPREF1058_RS00110 0.69 -0.3 57,477 + HMPREF1058_RS00110 0.75 -0.4 57,478 - HMPREF1058_RS00110 0.75 -1.8 57,531 + HMPREF1058_RS00110 0.78 -0.1 57,536 + HMPREF1058_RS00110 0.79 -0.3 57,810 + -2.8 57,811 - +0.6 57,831 + +1.4 57,831 + +0.4 57,831 + -0.3 57,835 - -1.8 57,860 - -2.4 57,871 - -0.2 57,989 - -1.1 58,022 - HMPREF1058_RS00105 0.12 -3.2 58,064 - HMPREF1058_RS00105 0.15 -1.5 58,116 - HMPREF1058_RS00105 0.19 -0.1 58,116 - HMPREF1058_RS00105 0.19 -0.8 58,358 - HMPREF1058_RS00105 0.38 +1.4 58,368 + HMPREF1058_RS00105 0.39 -1.7 58,368 + HMPREF1058_RS00105 0.39 -0.1 58,369 - HMPREF1058_RS00105 0.39 +0.8 58,513 - HMPREF1058_RS00105 0.51 -0.2 58,592 + HMPREF1058_RS00105 0.57 +0.9 58,633 + HMPREF1058_RS00105 0.60 -1.1 58,634 - HMPREF1058_RS00105 0.60 -1.5 58,634 - HMPREF1058_RS00105 0.60 +0.3 58,693 + HMPREF1058_RS00105 0.65 -0.8 58,762 + HMPREF1058_RS00105 0.70 -0.9 58,792 + HMPREF1058_RS00105 0.72 +0.6
Or see this region's nucleotide sequence