Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS00085

Experiment: Galactan from Potato 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS00090 and HMPREF1058_RS00085 are separated by 118 nucleotidesHMPREF1058_RS00085 and HMPREF1058_RS00080 are separated by 143 nucleotides HMPREF1058_RS00090: HMPREF1058_RS00090 - beta-galactosidase, at 64,574 to 66,688 _RS00090 HMPREF1058_RS00085: HMPREF1058_RS00085 - glycoside hydrolase family 88 protein, at 66,807 to 67,937 _RS00085 HMPREF1058_RS00080: HMPREF1058_RS00080 - glycoside hydrolase, at 68,081 to 71,368 _RS00080 Position (kb) 66 67 68Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 66.129 kb on - strand, within HMPREF1058_RS00090at 66.129 kb on - strand, within HMPREF1058_RS00090at 66.262 kb on - strand, within HMPREF1058_RS00090at 66.310 kb on + strand, within HMPREF1058_RS00090at 66.360 kb on + strand, within HMPREF1058_RS00090at 66.371 kb on + strand, within HMPREF1058_RS00090at 66.374 kb on - strand, within HMPREF1058_RS00090at 66.374 kb on - strand, within HMPREF1058_RS00090at 66.416 kb on - strand, within HMPREF1058_RS00090at 66.552 kb on - strandat 66.573 kb on + strandat 66.582 kb on - strandat 66.670 kb on - strandat 66.670 kb on - strandat 66.679 kb on + strandat 66.694 kb on + strandat 66.750 kb on - strandat 66.769 kb on + strandat 66.770 kb on - strandat 66.853 kb on - strandat 66.886 kb on + strandat 66.930 kb on + strand, within HMPREF1058_RS00085at 66.975 kb on - strand, within HMPREF1058_RS00085at 67.056 kb on + strand, within HMPREF1058_RS00085at 67.057 kb on - strand, within HMPREF1058_RS00085at 67.112 kb on + strand, within HMPREF1058_RS00085at 67.113 kb on - strand, within HMPREF1058_RS00085at 67.116 kb on + strand, within HMPREF1058_RS00085at 67.116 kb on + strand, within HMPREF1058_RS00085at 67.137 kb on - strand, within HMPREF1058_RS00085at 67.228 kb on - strand, within HMPREF1058_RS00085at 67.234 kb on - strand, within HMPREF1058_RS00085at 67.247 kb on - strand, within HMPREF1058_RS00085at 67.248 kb on + strand, within HMPREF1058_RS00085at 67.300 kb on + strand, within HMPREF1058_RS00085at 67.351 kb on + strand, within HMPREF1058_RS00085at 67.351 kb on + strand, within HMPREF1058_RS00085at 67.351 kb on + strand, within HMPREF1058_RS00085at 67.384 kb on + strand, within HMPREF1058_RS00085at 67.384 kb on + strand, within HMPREF1058_RS00085at 67.385 kb on - strand, within HMPREF1058_RS00085at 67.385 kb on - strand, within HMPREF1058_RS00085at 67.390 kb on + strand, within HMPREF1058_RS00085at 67.390 kb on + strand, within HMPREF1058_RS00085at 67.453 kb on - strand, within HMPREF1058_RS00085at 67.498 kb on - strand, within HMPREF1058_RS00085at 67.520 kb on + strand, within HMPREF1058_RS00085at 67.524 kb on + strand, within HMPREF1058_RS00085at 67.524 kb on + strand, within HMPREF1058_RS00085at 67.525 kb on - strand, within HMPREF1058_RS00085at 67.525 kb on - strand, within HMPREF1058_RS00085at 67.575 kb on + strand, within HMPREF1058_RS00085at 67.586 kb on - strand, within HMPREF1058_RS00085at 67.604 kb on - strand, within HMPREF1058_RS00085at 67.675 kb on + strand, within HMPREF1058_RS00085at 67.679 kb on + strand, within HMPREF1058_RS00085at 67.680 kb on - strand, within HMPREF1058_RS00085at 67.730 kb on - strand, within HMPREF1058_RS00085at 67.732 kb on + strand, within HMPREF1058_RS00085at 67.733 kb on - strand, within HMPREF1058_RS00085at 67.752 kb on - strand, within HMPREF1058_RS00085at 67.836 kb on - strandat 67.920 kb on + strandat 67.956 kb on + strandat 67.956 kb on + strandat 67.994 kb on - strandat 68.027 kb on - strandat 68.027 kb on - strandat 68.027 kb on - strandat 68.052 kb on - strandat 68.093 kb on - strandat 68.257 kb on - strandat 68.257 kb on - strandat 68.257 kb on - strandat 68.257 kb on - strandat 68.288 kb on + strandat 68.405 kb on - strandat 68.408 kb on - strandat 68.504 kb on + strand, within HMPREF1058_RS00080at 68.504 kb on + strand, within HMPREF1058_RS00080at 68.504 kb on + strand, within HMPREF1058_RS00080at 68.612 kb on + strand, within HMPREF1058_RS00080at 68.613 kb on - strand, within HMPREF1058_RS00080at 68.694 kb on - strand, within HMPREF1058_RS00080at 68.718 kb on - strand, within HMPREF1058_RS00080at 68.718 kb on - strand, within HMPREF1058_RS00080at 68.735 kb on + strand, within HMPREF1058_RS00080at 68.737 kb on + strand, within HMPREF1058_RS00080at 68.738 kb on - strand, within HMPREF1058_RS00080at 68.739 kb on + strand, within HMPREF1058_RS00080at 68.768 kb on + strand, within HMPREF1058_RS00080at 68.793 kb on - strand, within HMPREF1058_RS00080

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C)
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66,129 - HMPREF1058_RS00090 0.74 -0.0
66,129 - HMPREF1058_RS00090 0.74 -0.6
66,262 - HMPREF1058_RS00090 0.80 -3.5
66,310 + HMPREF1058_RS00090 0.82 +0.4
66,360 + HMPREF1058_RS00090 0.84 +0.1
66,371 + HMPREF1058_RS00090 0.85 -0.6
66,374 - HMPREF1058_RS00090 0.85 -2.5
66,374 - HMPREF1058_RS00090 0.85 +0.4
66,416 - HMPREF1058_RS00090 0.87 +0.8
66,552 - -0.7
66,573 + -0.4
66,582 - -0.3
66,670 - +0.2
66,670 - +0.4
66,679 + +2.4
66,694 + -0.2
66,750 - +0.4
66,769 + +0.1
66,770 - -1.2
66,853 - +0.6
66,886 + -0.1
66,930 + HMPREF1058_RS00085 0.11 -0.0
66,975 - HMPREF1058_RS00085 0.15 -1.0
67,056 + HMPREF1058_RS00085 0.22 +0.8
67,057 - HMPREF1058_RS00085 0.22 -2.9
67,112 + HMPREF1058_RS00085 0.27 -0.2
67,113 - HMPREF1058_RS00085 0.27 +1.1
67,116 + HMPREF1058_RS00085 0.27 -0.6
67,116 + HMPREF1058_RS00085 0.27 +4.7
67,137 - HMPREF1058_RS00085 0.29 -0.4
67,228 - HMPREF1058_RS00085 0.37 -1.4
67,234 - HMPREF1058_RS00085 0.38 +0.6
67,247 - HMPREF1058_RS00085 0.39 +2.5
67,248 + HMPREF1058_RS00085 0.39 -0.4
67,300 + HMPREF1058_RS00085 0.44 +0.5
67,351 + HMPREF1058_RS00085 0.48 +0.1
67,351 + HMPREF1058_RS00085 0.48 -0.6
67,351 + HMPREF1058_RS00085 0.48 -0.8
67,384 + HMPREF1058_RS00085 0.51 -0.4
67,384 + HMPREF1058_RS00085 0.51 -1.7
67,385 - HMPREF1058_RS00085 0.51 +0.1
67,385 - HMPREF1058_RS00085 0.51 +0.7
67,390 + HMPREF1058_RS00085 0.52 +0.4
67,390 + HMPREF1058_RS00085 0.52 +1.1
67,453 - HMPREF1058_RS00085 0.57 -1.3
67,498 - HMPREF1058_RS00085 0.61 -2.1
67,520 + HMPREF1058_RS00085 0.63 +0.5
67,524 + HMPREF1058_RS00085 0.63 +0.4
67,524 + HMPREF1058_RS00085 0.63 -1.6
67,525 - HMPREF1058_RS00085 0.63 -3.3
67,525 - HMPREF1058_RS00085 0.63 +1.1
67,575 + HMPREF1058_RS00085 0.68 +0.1
67,586 - HMPREF1058_RS00085 0.69 -2.2
67,604 - HMPREF1058_RS00085 0.70 -0.4
67,675 + HMPREF1058_RS00085 0.77 +0.5
67,679 + HMPREF1058_RS00085 0.77 +1.7
67,680 - HMPREF1058_RS00085 0.77 -0.3
67,730 - HMPREF1058_RS00085 0.82 +0.9
67,732 + HMPREF1058_RS00085 0.82 -0.8
67,733 - HMPREF1058_RS00085 0.82 +2.0
67,752 - HMPREF1058_RS00085 0.84 -0.1
67,836 - -0.3
67,920 + -0.8
67,956 + +0.6
67,956 + +0.9
67,994 - -1.6
68,027 - +0.3
68,027 - +0.1
68,027 - -0.4
68,052 - -0.2
68,093 - +0.7
68,257 - +1.1
68,257 - -0.4
68,257 - -0.3
68,257 - -0.6
68,288 + +1.7
68,405 - +1.3
68,408 - +0.7
68,504 + HMPREF1058_RS00080 0.13 -0.6
68,504 + HMPREF1058_RS00080 0.13 +1.9
68,504 + HMPREF1058_RS00080 0.13 -0.6
68,612 + HMPREF1058_RS00080 0.16 +2.4
68,613 - HMPREF1058_RS00080 0.16 +1.9
68,694 - HMPREF1058_RS00080 0.19 +1.8
68,718 - HMPREF1058_RS00080 0.19 -0.7
68,718 - HMPREF1058_RS00080 0.19 +1.0
68,735 + HMPREF1058_RS00080 0.20 -0.6
68,737 + HMPREF1058_RS00080 0.20 +0.4
68,738 - HMPREF1058_RS00080 0.20 +0.6
68,739 + HMPREF1058_RS00080 0.20 -0.6
68,768 + HMPREF1058_RS00080 0.21 +0.0
68,793 - HMPREF1058_RS00080 0.22 -0.2

Or see this region's nucleotide sequence